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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152801 4tub:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    152802 4tub:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    152803 4tub:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    152804 4tub:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    152805 4tub:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    152806 4tub:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    152807 4tub:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152808 4tub:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    152809 4tub:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152810 4tub:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152811 4tub:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152812 4tub:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152813 4tub:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152814 4tub:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152815 4tub:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152816 4tub:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152817 4tub:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152818 4tub:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152819 4tub:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152820 4tub:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    152821 4tub:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152822 4tub:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152823 4tub:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    152824 4tub:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152825 4tub:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152826 4tub:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152827 4tub:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152828 4tub:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152829 4tub:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152830 4tub:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152831 4tub:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152832 4tub:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152833 4tub:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152834 4tub:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152835 4tub:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    152836 4tub:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152837 4tub:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152838 4tub:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152839 4tub:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152840 4tub:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152841 4tub:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152842 4tub:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152843 4tub:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152844 4tub:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152845 4tub:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152846 4tub:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152847 4tub:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152848 4tub:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152849 4tub:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152850 4tub:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152851 4tub:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152852 4tub:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152853 4tub:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152854 4tub:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    152855 4tub:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152856 4tub:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152857 4tub:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152858 4tub:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152859 4tub:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    152860 4tub:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    152861 4tub:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    152862 4tub:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    152863 4tub:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    152864 4tub:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    152865 4tub:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    152866 4tub:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    152867 4tub:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    152868 4tub:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    152869 4tub:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    152870 4tub:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    152871 4tub:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    152872 4tub:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    152873 4tuc:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152874 4tuc:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    152875 4tuc:QC (3.6) BS02 rna ? GO:0003676 ... P80372 25352689
    152876 4tuc:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152877 4tuc:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    152878 4tuc:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152879 4tuc:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152880 4tuc:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152881 4tuc:QG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152882 4tuc:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152883 4tuc:QH (3.6) BS02 MG ? GO:0003735 ... P0DOY9 25352689
    152884 4tuc:QI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152885 4tuc:QI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152886 4tuc:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152887 4tuc:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152888 4tuc:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152889 4tuc:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152890 4tuc:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152891 4tuc:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    152892 4tuc:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152893 4tuc:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152894 4tuc:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152895 4tuc:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152896 4tuc:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152897 4tuc:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152898 4tuc:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152899 4tuc:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152900 4tuc:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152901 4tuc:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152902 4tuc:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152903 4tuc:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152904 4tuc:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152905 4tuc:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152906 4tuc:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152907 4tuc:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152908 4tuc:R4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152909 4tuc:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152910 4tuc:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152911 4tuc:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152912 4tuc:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152913 4tuc:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152914 4tuc:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152915 4tuc:RD (3.6) BS02 rna ? GO:0002181 ... P60405 25352689
    152916 4tuc:RD (3.6) BS03 MG ? GO:0002181 ... P60405 25352689
    152917 4tuc:RD (3.6) BS04 MG ? GO:0002181 ... P60405 25352689
    152918 4tuc:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152919 4tuc:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152920 4tuc:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    152921 4tuc:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152922 4tuc:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152923 4tuc:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    152924 4tuc:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152925 4tuc:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152926 4tuc:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152927 4tuc:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152928 4tuc:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152929 4tuc:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152930 4tuc:RP (3.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25352689
    152931 4tuc:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    152932 4tuc:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    152933 4tuc:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    152934 4tuc:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    152935 4tuc:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    152936 4tuc:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    152937 4tuc:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    152938 4tuc:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    152939 4tuc:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    152940 4tuc:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    152941 4tuc:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    152942 4tuc:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    152943 4tuc:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    152944 4tuc:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    152945 4tuc:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152946 4tuc:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    152947 4tuc:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152948 4tuc:XD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    152949 4tuc:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152950 4tuc:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152951 4tuc:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152952 4tuc:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152953 4tuc:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152954 4tuc:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152955 4tuc:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152956 4tuc:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152957 4tuc:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152958 4tuc:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152959 4tuc:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    152960 4tuc:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152961 4tuc:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152962 4tuc:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    152963 4tuc:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152964 4tuc:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152965 4tuc:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152966 4tuc:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152967 4tuc:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152968 4tuc:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152969 4tuc:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152970 4tuc:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152971 4tuc:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152972 4tuc:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152973 4tuc:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152974 4tuc:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    152975 4tuc:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152976 4tuc:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152977 4tuc:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152978 4tuc:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152979 4tuc:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152980 4tuc:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152981 4tuc:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152982 4tuc:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152983 4tuc:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152984 4tuc:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152985 4tuc:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152986 4tuc:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152987 4tuc:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152988 4tuc:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152989 4tuc:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152990 4tuc:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152991 4tuc:YG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    152992 4tuc:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152993 4tuc:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152994 4tuc:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    152995 4tuc:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152996 4tuc:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152997 4tuc:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152998 4tuc:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152999 4tuc:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    153000 4tuc:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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