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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152601 4tua:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152602 4tua:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    152603 4tua:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152604 4tua:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152605 4tua:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152606 4tua:QG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152607 4tua:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152608 4tua:QI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152609 4tua:QI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152610 4tua:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152611 4tua:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152612 4tua:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152613 4tua:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152614 4tua:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152615 4tua:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    152616 4tua:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152617 4tua:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152618 4tua:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152619 4tua:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152620 4tua:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152621 4tua:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152622 4tua:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152623 4tua:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152624 4tua:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152625 4tua:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152626 4tua:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152627 4tua:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    152628 4tua:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152629 4tua:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152630 4tua:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152631 4tua:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152632 4tua:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152633 4tua:R4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152634 4tua:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152635 4tua:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152636 4tua:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152637 4tua:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152638 4tua:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152639 4tua:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152640 4tua:RD (3.6) BS02 rna ? GO:0002181 ... P60405 25352689
    152641 4tua:RD (3.6) BS03 MG ? GO:0002181 ... P60405 25352689
    152642 4tua:RD (3.6) BS04 MG ? GO:0002181 ... P60405 25352689
    152643 4tua:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152644 4tua:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152645 4tua:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    152646 4tua:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152647 4tua:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152648 4tua:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    152649 4tua:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152650 4tua:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152651 4tua:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152652 4tua:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152653 4tua:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152654 4tua:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152655 4tua:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    152656 4tua:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    152657 4tua:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    152658 4tua:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    152659 4tua:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    152660 4tua:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    152661 4tua:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    152662 4tua:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    152663 4tua:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    152664 4tua:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    152665 4tua:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    152666 4tua:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    152667 4tua:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    152668 4tua:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    152669 4tua:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152670 4tua:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    152671 4tua:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152672 4tua:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152673 4tua:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152674 4tua:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152675 4tua:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152676 4tua:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152677 4tua:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152678 4tua:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152679 4tua:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152680 4tua:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152681 4tua:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152682 4tua:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    152683 4tua:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152684 4tua:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152685 4tua:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    152686 4tua:XM (3.6) BS04 rna ? GO:0000049 ... P80377 25352689
    152687 4tua:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152688 4tua:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152689 4tua:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152690 4tua:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152691 4tua:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152692 4tua:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152693 4tua:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152694 4tua:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152695 4tua:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152696 4tua:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152697 4tua:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152698 4tua:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    152699 4tua:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152700 4tua:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152701 4tua:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152702 4tua:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152703 4tua:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152704 4tua:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152705 4tua:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152706 4tua:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152707 4tua:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152708 4tua:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152709 4tua:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152710 4tua:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152711 4tua:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152712 4tua:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152713 4tua:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152714 4tua:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152715 4tua:YG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    152716 4tua:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152717 4tua:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152718 4tua:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    152719 4tua:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152720 4tua:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152721 4tua:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152722 4tua:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152723 4tua:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    152724 4tua:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    152725 4tua:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    152726 4tua:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    152727 4tua:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    152728 4tua:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    152729 4tua:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    152730 4tua:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    152731 4tua:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    152732 4tua:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    152733 4tua:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    152734 4tua:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    152735 4tua:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    152736 4tua:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    152737 4tub:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152738 4tub:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    152739 4tub:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    152740 4tub:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    152741 4tub:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    152742 4tub:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    152743 4tub:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    152744 4tub:QG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    152745 4tub:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    152746 4tub:QI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    152747 4tub:QI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    152748 4tub:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    152749 4tub:QJ (3.6) BS02 rna ? GO:0000049 ... Q5SHN7 25352689
    152750 4tub:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    152751 4tub:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    152752 4tub:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    152753 4tub:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    152754 4tub:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    152755 4tub:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    152756 4tub:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    152757 4tub:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    152758 4tub:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    152759 4tub:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    152760 4tub:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    152761 4tub:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    152762 4tub:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    152763 4tub:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    152764 4tub:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    152765 4tub:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    152766 4tub:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    152767 4tub:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    152768 4tub:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    152769 4tub:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    152770 4tub:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    152771 4tub:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    152772 4tub:R4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    152773 4tub:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    152774 4tub:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    152775 4tub:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    152776 4tub:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    152777 4tub:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    152778 4tub:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    152779 4tub:RD (3.6) BS02 rna ? GO:0002181 ... P60405 25352689
    152780 4tub:RD (3.6) BS03 MG ? GO:0002181 ... P60405 25352689
    152781 4tub:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    152782 4tub:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    152783 4tub:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    152784 4tub:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    152785 4tub:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    152786 4tub:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    152787 4tub:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    152788 4tub:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    152789 4tub:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    152790 4tub:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    152791 4tub:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    152792 4tub:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    152793 4tub:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    152794 4tub:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    152795 4tub:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    152796 4tub:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    152797 4tub:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    152798 4tub:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    152799 4tub:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    152800 4tub:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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