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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152401 4ts9:C (1.77) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152402 4ts9:C (1.77) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152403 4ts9:C (1.77) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152404 4tsd:A (1.53) BS01 ZN ? GO:0005829 ... O25673 26096900
    152405 4tsd:B (1.53) BS01 ZN ? GO:0005829 ... O25673 26096900
    152406 4tsf:A (3.2) BS01 ATP ? GO:0005515 ... P19483 25049402
    152407 4tsf:B (3.2) BS01 ATP ? GO:0005515 ... P19483 25049402
    152408 4tsf:C (3.2) BS01 ATP ? GO:0005515 ... P19483 25049402
    152409 4tsf:D (3.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 25049402
    152410 4tsf:E (3.2) BS01 peptide 7.1.2.2 GO:0005515 ... P00829 25049402
    152411 4tsf:E (3.2) BS02 ATP 7.1.2.2 GO:0005515 ... P00829 25049402
    152412 4tsf:F (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 25049402
    152413 4tsf:F (3.2) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 25049402
    152414 4tsh:A (2.0) BS01 MG ? GO:0005618 ... C9E3B4 25331888
    152415 4tsk:A (2.5) BS01 MG 1.1.1.86 GO:0000287 ... C8WR67 25172159
    152416 4tsk:A (2.5) BS02 MG 1.1.1.86 GO:0000287 ... C8WR67 25172159
    152417 4tsk:A (2.5) BS03 MG 1.1.1.86 GO:0000287 ... C8WR67 25172159
    152418 4tsk:A (2.5) BS04 NDP 1.1.1.86 GO:0000287 ... C8WR67 25172159
    152419 4tsl:A (1.6) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152420 4tsl:A (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152421 4tsl:B (1.6) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152422 4tsl:B (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152423 4tsm:A (1.899) BS01 GLC ? GO:0005515 ... P0AEX9 25599642
    152424 4tsm:A (1.899) BS02 GLC ? GO:0005515 ... P0AEX9 25599642
    152425 4tsm:A (1.899) BS03 GLC ? GO:0005515 ... P0AEX9 25599642
    152426 4tsm:A (1.899) BS04 GLC ? GO:0005515 ... P0AEX9 25599642
    152427 4tsm:A (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    152428 4tsm:A (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    152429 4tsm:A (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    152430 4tsm:A (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    152431 4tsm:A (1.899) BS09 TMO ? GO:0005515 ... P0AEX9 25599642
    152432 4tsm:A (1.899) BS10 TMO ? GO:0005515 ... P0AEX9 25599642
    152433 4tsm:A (1.899) BS11 TMO ? GO:0005515 ... P0AEX9 25599642
    152434 4tsm:B (1.899) BS01 GLC ? GO:0005515 ... P0AEX9 25599642
    152435 4tsm:B (1.899) BS02 GLC ? GO:0005515 ... P0AEX9 25599642
    152436 4tsm:B (1.899) BS03 GLC ? GO:0005515 ... P0AEX9 25599642
    152437 4tsm:B (1.899) BS04 GLC ? GO:0005515 ... P0AEX9 25599642
    152438 4tsm:B (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    152439 4tsm:B (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    152440 4tsm:B (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    152441 4tsm:B (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    152442 4tsm:C (1.899) BS01 GLC ? GO:0005515 ... P0AEX9 25599642
    152443 4tsm:C (1.899) BS02 GLC ? GO:0005515 ... P0AEX9 25599642
    152444 4tsm:C (1.899) BS03 GLC ? GO:0005515 ... P0AEX9 25599642
    152445 4tsm:C (1.899) BS04 GLC ? GO:0005515 ... P0AEX9 25599642
    152446 4tsm:C (1.899) BS05 TMO ? GO:0005515 ... P0AEX9 25599642
    152447 4tsm:C (1.899) BS06 TMO ? GO:0005515 ... P0AEX9 25599642
    152448 4tsm:C (1.899) BS07 TMO ? GO:0005515 ... P0AEX9 25599642
    152449 4tsm:C (1.899) BS08 TMO ? GO:0005515 ... P0AEX9 25599642
    152450 4tsm:C (1.899) BS09 TMO ? GO:0005515 ... P0AEX9 25599642
    152451 4tsn:A (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152452 4tsn:A (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152453 4tsn:A (1.57) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    152454 4tsn:B (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152455 4tsn:B (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152456 4tsn:C (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152457 4tsn:D (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    152458 4tsn:D (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152459 4tso:A (2.3) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152460 4tso:A (2.3) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152461 4tso:A (2.3) BS03 HXG ? GO:0005576 ... B9W5G6 25716479
    152462 4tso:B (2.3) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152463 4tso:B (2.3) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152464 4tsp:A (2.15) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152465 4tsp:A (2.15) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152466 4tsp:B (2.15) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152467 4tsp:B (2.15) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152468 4tsp:B (2.15) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    152469 4tsq:A (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152470 4tsq:A (1.6) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152471 4tsq:A (1.6) BS03 HXG ? GO:0005576 ... B9W5G6 25716479
    152472 4tsq:A (1.6) BS04 HXG ? GO:0005576 ... B9W5G6 25716479
    152473 4tsq:A (1.6) BS05 HXG ? GO:0005576 ... B9W5G6 25716479
    152474 4tsq:A (1.6) BS06 PC ? GO:0005576 ... B9W5G6 25716479
    152475 4tsq:A (1.6) BS07 PC ? GO:0005576 ... B9W5G6 25716479
    152476 4tsq:B (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152477 4tsq:B (1.6) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152478 4tsq:B (1.6) BS03 HXG ? GO:0005576 ... B9W5G6 25716479
    152479 4tsq:B (1.6) BS04 HXG ? GO:0005576 ... B9W5G6 25716479
    152480 4tsq:C (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152481 4tsq:C (1.6) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152482 4tsq:C (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    152483 4tsq:D (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152484 4tsq:D (1.6) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152485 4tsq:D (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    152486 4tsq:E (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152487 4tsq:E (1.6) BS02 HXG ? GO:0005576 ... B9W5G6 25716479
    152488 4tsq:E (1.6) BS03 HXG ? GO:0005576 ... B9W5G6 25716479
    152489 4tsq:E (1.6) BS04 PC ? GO:0005576 ... B9W5G6 25716479
    152490 4tsq:E (1.6) BS05 PC ? GO:0005576 ... B9W5G6 25716479
    152491 4tsq:F (1.6) BS01 HXG ? GO:0005576 ... B9W5G6 25716479
    152492 4tsq:F (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    152493 4tsq:F (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    152494 4tsr:A (2.07) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 N/A
    152495 4tsy:A (3.14) BS01 HXJ ? GO:0005576 ... B9W5G6 25716479
    152496 4tsy:A (3.14) BS02 HXJ ? GO:0005576 ... B9W5G6 25716479
    152497 4tsy:A (3.14) BS03 HXJ ? GO:0005576 ... B9W5G6 25716479
    152498 4tsy:B (3.14) BS01 HXJ ? GO:0005576 ... B9W5G6 25716479
    152499 4tsy:B (3.14) BS02 HXJ ? GO:0005576 ... B9W5G6 25716479
    152500 4tsy:B (3.14) BS03 HXJ ? GO:0005576 ... B9W5G6 25716479
    152501 4tsy:B (3.14) BS04 HXJ ? GO:0005576 ... B9W5G6 25716479
    152502 4tsy:C (3.14) BS01 HXJ ? GO:0005576 ... B9W5G6 25716479
    152503 4tsy:C (3.14) BS02 HXJ ? GO:0005576 ... B9W5G6 25716479
    152504 4tsy:C (3.14) BS03 HXJ ? GO:0005576 ... B9W5G6 25716479
    152505 4tsy:C (3.14) BS04 HXJ ? GO:0005576 ... B9W5G6 25716479
    152506 4tsy:D (3.14) BS01 HXJ ? GO:0005576 ... B9W5G6 25716479
    152507 4tsy:D (3.14) BS02 HXJ ? GO:0005576 ... B9W5G6 25716479
    152508 4tsy:D (3.14) BS03 HXJ ? GO:0005576 ... B9W5G6 25716479
    152509 4tsy:D (3.14) BS04 HXJ ? GO:0005576 ... B9W5G6 25716479
    152510 4tsz:A (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152511 4tsz:A (2.0) BS02 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152512 4tsz:B (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152513 4tsz:C (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152514 4tsz:D (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152515 4tsz:E (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152516 4tsz:F (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152517 4tsz:G (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152518 4tsz:H (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152519 4tsz:I (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152520 4tsz:J (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152521 4tsz:K (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152522 4tsz:L (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152523 4tsz:M (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152524 4tsz:N (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152525 4tsz:O (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152526 4tsz:P (2.0) BS01 peptide 2.7.7.7 GO:0003677 ... Q9I7C4 25170813
    152527 4tt3:A (3.21) BS01 ATP ? GO:0005515 ... P19483 25049402
    152528 4tt3:B (3.21) BS01 ATP ? GO:0005515 ... P19483 25049402
    152529 4tt3:C (3.21) BS01 ATP ? GO:0005515 ... P19483 25049402
    152530 4tt3:C (3.21) BS02 MG ? GO:0005515 ... P19483 25049402
    152531 4tt3:D (3.21) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 25049402
    152532 4tt3:E (3.21) BS01 peptide 7.1.2.2 GO:0005515 ... P00829 25049402
    152533 4tt3:F (3.21) BS01 peptide 7.1.2.2 GO:0005515 ... P00829 25049402
    152534 4tt3:F (3.21) BS02 ATP 7.1.2.2 GO:0005515 ... P00829 25049402
    152535 4tt3:F (3.21) BS03 ADP 7.1.2.2 GO:0005515 ... P00829 25049402
    152536 4tt3:G (3.21) BS01 peptide ? GO:0005515 ... P05631 25049402
    152537 4tt5:A (2.18) BS01 HEM 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 N/A
    152538 4tt5:A (2.18) BS02 36Y 1.11.1.7
    1.14.-.-    		 GO:0004497 ... Q55080 N/A
    152539 4tt7:A (2.1) BS01 COM 2.7.10.1 GO:0004672 ... Q9UM73 25678804
    152540 4tt7:A (2.1) BS02 COM 2.7.10.1 GO:0004672 ... Q9UM73 25678804
    152541 4tta:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152542 4tta:A (2.0) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152543 4tta:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152544 4tta:C (2.0) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152545 4tta:C (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152546 4tta:D (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152547 4tta:D (2.0) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152548 4tta:E (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152549 4tta:F (2.0) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152550 4tta:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152551 4ttg:A (1.6) BS01 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152552 4ttg:A (1.6) BS02 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152553 4ttg:B (1.6) BS01 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152554 4ttg:B (1.6) BS02 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152555 4ttg:C (1.6) BS01 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152556 4ttg:C (1.6) BS02 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152557 4ttg:D (1.6) BS01 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152558 4ttg:D (1.6) BS02 MG 3.2.1.23 GO:0000287 ... Q8VNN2 25820412
    152559 4tth:B (2.9) BS01 24V 2.7.11.22 GO:0000082 ... Q00534 24641103 BindingDB: IC50=4.4nM
    152560 4tti:A (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152561 4tti:A (1.89) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152562 4tti:A (1.89) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152563 4tti:B (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152564 4tti:C (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152565 4tti:C (1.89) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152566 4tti:C (1.89) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152567 4tti:D (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152568 4tti:D (1.89) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152569 4tti:E (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152570 4tti:F (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152571 4tti:F (1.89) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152572 4tti:F (1.89) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152573 4ttj:A (1.874) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152574 4ttj:A (1.874) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152575 4ttj:A (1.874) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152576 4ttj:B (1.874) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152577 4ttj:B (1.874) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152578 4ttj:D (1.874) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152579 4ttj:D (1.874) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152580 4ttj:D (1.874) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    152581 4ttq:A (2.2) BS01 ATP 2.7.1.24 GO:0004140 ... Q5ZVH3 25449315
    152582 4ttq:A (2.2) BS02 PO4 2.7.1.24 GO:0004140 ... Q5ZVH3 25449315
    152583 4ttr:A (2.1) BS01 BU2 2.7.1.24 GO:0004140 ... Q5ZVH3 25449315
    152584 4ttt:L (1.72) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 N/A
    152585 4ttt:L (1.72) BS02 MG 1.12.99.6 GO:0005515 ... P31891 N/A
    152586 4ttt:S (1.72) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 N/A
    152587 4ttt:S (1.72) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 N/A
    152588 4ttt:S (1.72) BS03 F4S 1.12.99.6 GO:0005515 ... P31892 N/A
    152589 4ttv:A (2.8) BS01 BC9 6.1.1.3 GO:0000166 ... P26639 26271225 PDBbind: -logKd/Ki=6.68, IC50=209nM
    152590 4ttv:A (2.8) BS02 ZN 6.1.1.3 GO:0000166 ... P26639 26271225
    152591 4ttv:B (2.8) BS01 BC9 6.1.1.3 GO:0000166 ... P26639 26271225
    152592 4ttv:B (2.8) BS02 ZN 6.1.1.3 GO:0000166 ... P26639 26271225
    152593 4ttv:C (2.8) BS01 BC9 6.1.1.3 GO:0000166 ... P26639 26271225
    152594 4ttv:C (2.8) BS02 ZN 6.1.1.3 GO:0000166 ... P26639 26271225
    152595 4ttv:D (2.8) BS01 BC9 6.1.1.3 GO:0000166 ... P26639 26271225
    152596 4ttv:D (2.8) BS02 ZN 6.1.1.3 GO:0000166 ... P26639 26271225
    152597 4tu5:X (2.161) BS01 NDP 1.5.1.3 GO:0000166 ... A0A0M3KKX1 26098608
    152598 4tu5:X (2.161) BS02 06W 1.5.1.3 GO:0000166 ... A0A0M3KKX1 26098608 MOAD: ic50=18nM
    152599 4tua:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    152600 4tua:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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