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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    147801 4qpp:A (2.52) BS02 36S 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147802 4qpp:B (2.52) BS01 peptide 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147803 4qpp:B (2.52) BS02 SAH 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147804 4qpp:B (2.52) BS03 36S 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147805 4qpp:C (2.52) BS01 peptide 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147806 4qpp:C (2.52) BS02 SAH 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147807 4qpp:C (2.52) BS03 36S 2.1.1.319 GO:0000122 ... Q96LA8 N/A
    147808 4qpz:A (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147809 4qpz:A (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147810 4qpz:A (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147811 4qpz:B (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147812 4qpz:B (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147813 4qpz:B (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147814 4qpz:C (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147815 4qpz:C (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147816 4qpz:C (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147817 4qpz:D (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147818 4qpz:D (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147819 4qpz:D (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147820 4qpz:E (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147821 4qpz:E (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147822 4qpz:E (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147823 4qpz:F (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147824 4qpz:F (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147825 4qpz:F (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147826 4qpz:G (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147827 4qpz:G (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147828 4qpz:G (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147829 4qpz:H (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147830 4qpz:H (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147831 4qpz:H (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147832 4qq6:A (1.75) BS01 36X ? GO:0003723 ... Q16637 36114190
    147833 4qq7:A (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    147834 4qq7:A (2.2) BS02 GLO ? GO:0004364 ... B4E6Q3 N/A
    147835 4qq7:B (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    147836 4qq7:B (2.2) BS02 GLO ? GO:0004364 ... B4E6Q3 N/A
    147837 4qq8:A (2.88) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147838 4qq8:A (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147839 4qq8:A (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147840 4qq8:B (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147841 4qq8:B (2.88) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147842 4qq8:B (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147843 4qq8:C (2.88) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    147844 4qq8:C (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    147845 4qq8:C (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147846 4qq8:D (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    147847 4qq8:D (2.88) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    147848 4qq8:D (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    147849 4qqb:A (2.8) BS01 rna ? GO:0003676 ... P19339 25209665 PDBbind: Kd=1.24nM
    147850 4qqb:B (2.8) BS01 rna ? GO:0003676 ... P19339 25209665 PDBbind: Kd=1.24nM
    147851 4qqe:A (1.8) BS01 37F ? GO:0000122 ... P61964 N/A BindingDB: Kd=50nM
    147852 4qqk:A (1.88) BS01 37H 2.1.1.319 GO:0000122 ... Q96LA8 27480107
    147853 4qqq:A (2.5) BS01 MAN ? GO:0005576 ... Q2XU26 N/A
    147854 4qqq:A (2.5) BS02 MAN ? GO:0005576 ... Q2XU26 N/A
    147855 4qqr:A (2.7) BS01 ZN 1.1.1.133
    5.1.3.13    		 GO:0005886 ... Q9LQ04 N/A
    147856 4qqr:A (2.7) BS02 ZN 1.1.1.133
    5.1.3.13    		 GO:0005886 ... Q9LQ04 N/A
    147857 4qqr:B (2.7) BS01 ZN 1.1.1.133
    5.1.3.13    		 GO:0005886 ... Q9LQ04 N/A
    147858 4qqr:B (2.7) BS02 ZN 1.1.1.133
    5.1.3.13    		 GO:0005886 ... Q9LQ04 N/A
    147859 4qqu:A (2.98) BS01 ZN 2.1.1.14 GO:0003871 ... P82610 25545590
    147860 4qqu:A (2.98) BS02 39S 2.1.1.14 GO:0003871 ... P82610 25545590
    147861 4qqw:A (2.664) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147862 4qqw:A (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147863 4qqw:A (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147864 4qqw:C (2.664) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147865 4qqw:C (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147866 4qqw:C (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147867 4qqw:E (2.664) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147868 4qqw:E (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147869 4qqw:E (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147870 4qqw:G (2.664) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147871 4qqw:G (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147872 4qqw:G (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147873 4qqx:A (3.34) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147874 4qqx:A (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147875 4qqx:A (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147876 4qqx:A (3.34) BS04 ATP ? GO:0000027 ... Q47PJ0 25132177
    147877 4qqx:C (3.34) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147878 4qqx:C (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147879 4qqx:C (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147880 4qqx:C (3.34) BS04 ATP ? GO:0000027 ... Q47PJ0 25132177
    147881 4qqx:E (3.34) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147882 4qqx:E (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147883 4qqx:E (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147884 4qqx:E (3.34) BS04 ATP ? GO:0000027 ... Q47PJ0 25132177
    147885 4qqx:G (3.34) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147886 4qqx:G (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147887 4qqx:G (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147888 4qqx:G (3.34) BS04 ATP ? GO:0000027 ... Q47PJ0 25132177
    147889 4qqy:A (3.12) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147890 4qqy:A (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147891 4qqy:A (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147892 4qqy:A (3.12) BS04 ADP ? GO:0000027 ... Q47PJ0 25132177
    147893 4qqy:C (3.12) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147894 4qqy:C (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147895 4qqy:C (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147896 4qqy:C (3.12) BS04 ADP ? GO:0000027 ... Q47PJ0 25132177
    147897 4qqy:E (3.12) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147898 4qqy:E (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147899 4qqy:E (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147900 4qqy:E (3.12) BS04 ADP ? GO:0000027 ... Q47PJ0 25132177
    147901 4qqy:G (3.12) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147902 4qqy:G (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147903 4qqy:G (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147904 4qqy:G (3.12) BS04 ADP ? GO:0000027 ... Q47PJ0 25132177
    147905 4qqz:A (2.93) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147906 4qqz:A (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147907 4qqz:A (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147908 4qqz:A (2.93) BS04 ANP ? GO:0000027 ... Q47PJ0 25132177
    147909 4qqz:C (2.93) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147910 4qqz:C (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147911 4qqz:C (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147912 4qqz:C (2.93) BS04 ANP ? GO:0000027 ... Q47PJ0 25132177
    147913 4qqz:E (2.93) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147914 4qqz:E (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147915 4qqz:E (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147916 4qqz:E (2.93) BS04 ANP ? GO:0000027 ... Q47PJ0 25132177
    147917 4qqz:G (2.93) BS01 dna ? GO:0000027 ... Q47PJ0 25132177
    147918 4qqz:G (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    147919 4qqz:G (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    147920 4qqz:G (2.93) BS04 ANP ? GO:0000027 ... Q47PJ0 25132177
    147921 4qr6:A (1.05) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    147922 4qr6:A (1.05) BS02 37V 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    147923 4qr7:A (2.303) BS01 MLD 2.3.2.- GO:0005886 ... I6Y9J2 N/A
    147924 4qr7:A (2.303) BS02 DWZ 2.3.2.- GO:0005886 ... I6Y9J2 N/A
    147925 4qr8:A (1.999) BS01 MG 3.4.13.9 GO:0004177 ... P21165 25354344
    147926 4qr8:A (1.999) BS02 MG 3.4.13.9 GO:0004177 ... P21165 25354344
    147927 4qr8:B (1.999) BS01 MG 3.4.13.9 GO:0004177 ... P21165 25354344
    147928 4qr8:B (1.999) BS02 MG 3.4.13.9 GO:0004177 ... P21165 25354344
    147929 4qr9:A (2.0) BS01 dna ? GO:0003677 ... P63159 26143914
    147930 4qr9:A (2.0) BS02 dna ? GO:0003677 ... P63159 26143914
    147931 4qr9:A (2.0) BS03 dna ? GO:0003677 ... P63159 26143914
    147932 4qr9:B (2.0) BS01 dna ? GO:0003677 ... P63159 26143914
    147933 4qr9:B (2.0) BS02 dna ? GO:0003677 ... P63159 26143914
    147934 4qrb:A (1.64) BS01 MLD 2.3.2.- GO:0005886 ... I6Y9J2 N/A
    147935 4qrh:B (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    147936 4qrh:C (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    147937 4qrh:D (1.65) BS01 0O2 2.7.4.8 GO:0004385 ... A0A0J9X1Z9 25661490 MOAD: Ki=7uM
    147938 4qrn:A (1.07) BS01 MN ? GO:0005737 ... Q2GA79 N/A
    147939 4qrn:A (1.07) BS02 1DF ? GO:0005737 ... Q2GA79 N/A
    147940 4qrn:B (1.07) BS01 MN ? GO:0005737 ... Q2GA79 N/A
    147941 4qrn:B (1.07) BS02 1DF ? GO:0005737 ... Q2GA79 N/A
    147942 4qrn:C (1.07) BS01 MN ? GO:0005737 ... Q2GA79 N/A
    147943 4qrn:C (1.07) BS02 1DF ? GO:0005737 ... Q2GA79 N/A
    147944 4qrn:D (1.07) BS01 MN ? GO:0005737 ... Q2GA79 N/A
    147945 4qrn:D (1.07) BS02 1DF ? GO:0005737 ... Q2GA79 N/A
    147946 4qro:A (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147947 4qro:A (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147948 4qro:B (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147949 4qro:B (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147950 4qro:C (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147951 4qro:C (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147952 4qro:D (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147953 4qro:D (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147954 4qro:E (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147955 4qro:E (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147956 4qro:F (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147957 4qro:F (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147958 4qro:G (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147959 4qro:G (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147960 4qro:H (1.65) BS01 MN 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147961 4qro:H (1.65) BS02 38L 4.1.1.103 GO:0005737 ... Q12BV1 N/A
    147962 4qry:A (2.2) BS01 RET N/A GO:0005216 ... N/A 26039169
    147963 4qry:A (2.2) BS02 BR N/A GO:0005216 ... N/A 26039169
    147964 4qry:A (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147965 4qry:A (2.2) BS04 RET N/A GO:0005216 ... N/A 26039169
    147966 4qry:A (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    147967 4qry:A (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    147968 4qry:B (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    147969 4qry:B (2.2) BS02 RET N/A GO:0005216 ... N/A 26039169
    147970 4qry:B (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147971 4qry:B (2.2) BS04 RET N/A GO:0005216 ... N/A 26039169
    147972 4qry:B (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    147973 4qry:C (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    147974 4qry:C (2.2) BS02 RET N/A GO:0005216 ... N/A 26039169
    147975 4qry:C (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147976 4qry:C (2.2) BS04 RET N/A GO:0005216 ... N/A 26039169
    147977 4qry:C (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    147978 4qry:E (2.2) BS01 RET N/A GO:0005216 ... N/A 26039169
    147979 4qry:E (2.2) BS02 BR N/A GO:0005216 ... N/A 26039169
    147980 4qry:E (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147981 4qry:E (2.2) BS04 RET N/A GO:0005216 ... N/A 26039169
    147982 4qry:E (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    147983 4qry:E (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    147984 4qry:F (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    147985 4qry:F (2.2) BS02 RET N/A GO:0005216 ... N/A 26039169
    147986 4qry:F (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147987 4qry:F (2.2) BS04 BR N/A GO:0005216 ... N/A 26039169
    147988 4qry:F (2.2) BS05 RET N/A GO:0005216 ... N/A 26039169
    147989 4qry:F (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    147990 4qry:G (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    147991 4qry:G (2.2) BS02 RET N/A GO:0005216 ... N/A 26039169
    147992 4qry:G (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    147993 4qry:G (2.2) BS04 BR N/A GO:0005216 ... N/A 26039169
    147994 4qry:G (2.2) BS05 RET N/A GO:0005216 ... N/A 26039169
    147995 4qry:G (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    147996 4qrz:A (1.34) BS01 BGC ? GO:0015768 ... A9CGI0 N/A
    147997 4qrz:A (1.34) BS02 GLC ? GO:0015768 ... A9CGI0 N/A
    147998 4qrz:A (1.34) BS03 GLC ? GO:0015768 ... A9CGI0 N/A
    147999 4qs5:A (1.8) BS01 MN ? GO:0005737 ... Q2GA79 N/A
    148000 4qs5:A (1.8) BS02 1DF ? GO:0005737 ... Q2GA79 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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