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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144801 4p70:RV (3.68) BS01 rna ? GO:0003723 ... P60492 25128388
    144802 4p70:RW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    144803 4p70:RX (3.68) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    144804 4p70:RY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    144805 4p70:RZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    144806 4p70:RZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    144807 4p70:XB (3.68) BS01 rna ? GO:0003735 ... P80371 25128388
    144808 4p70:XC (3.68) BS01 rna ? GO:0003676 ... P80372 25128388
    144809 4p70:XD (3.68) BS01 rna ? GO:0003723 ... P80373 25128388
    144810 4p70:XD (3.68) BS02 ZN ? GO:0003723 ... P80373 25128388
    144811 4p70:XE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    144812 4p70:XF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    144813 4p70:XG (3.68) BS01 rna ? GO:0000028 ... P17291 25128388
    144814 4p70:XH (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144815 4p70:XI (3.68) BS01 rna ? GO:0000049 ... P80374 25128388
    144816 4p70:XI (3.68) BS02 rna ? GO:0000049 ... P80374 25128388
    144817 4p70:XJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    144818 4p70:XK (3.68) BS01 rna ? GO:0003735 ... P80376 25128388
    144819 4p70:XL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    144820 4p70:XL (3.68) BS02 rna ? GO:0000049 ... Q5SHN3 25128388
    144821 4p70:XM (3.68) BS01 rna ? GO:0000049 ... P80377 25128388
    144822 4p70:XM (3.68) BS02 rna ? GO:0000049 ... P80377 25128388
    144823 4p70:XM (3.68) BS03 rna ? GO:0000049 ... P80377 25128388
    144824 4p70:XM (3.68) BS04 MG ? GO:0000049 ... P80377 25128388
    144825 4p70:XM (3.68) BS05 MG ? GO:0000049 ... P80377 25128388
    144826 4p70:XN (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144827 4p70:XN (3.68) BS02 ZN N/A GO:0003735 ... N/A 25128388
    144828 4p70:XO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    144829 4p70:XO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    144830 4p70:XP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    144831 4p70:XQ (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144832 4p70:XR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    144833 4p70:XS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    144834 4p70:XT (3.68) BS01 rna ? GO:0003723 ... P80380 25128388
    144835 4p70:Y0 (3.68) BS01 rna ? GO:0003735 ... P60493 25128388
    144836 4p70:Y0 (3.68) BS02 rna ? GO:0003735 ... P60493 25128388
    144837 4p70:Y0 (3.68) BS03 rna ? GO:0003735 ... P60493 25128388
    144838 4p70:Y1 (3.68) BS01 rna ? GO:0003735 ... P60494 25128388
    144839 4p70:Y2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    144840 4p70:Y3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    144841 4p70:Y3 (3.68) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    144842 4p70:Y4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    144843 4p70:Y4 (3.68) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    144844 4p70:Y5 (3.68) BS01 rna ? GO:0003735 ... P80339 25128388
    144845 4p70:Y6 (3.68) BS01 rna ? GO:0000049 ... P35871 25128388
    144846 4p70:Y7 (3.68) BS01 rna ? GO:0003735 ... P80340 25128388
    144847 4p70:Y8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    144848 4p70:Y9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    144849 4p70:YD (3.68) BS01 rna ? GO:0002181 ... P60405 25128388
    144850 4p70:YD (3.68) BS02 rna ? GO:0002181 ... P60405 25128388
    144851 4p70:YE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    144852 4p70:YF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    144853 4p70:YG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    144854 4p70:YG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    144855 4p70:YG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 25128388
    144856 4p70:YH (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144857 4p70:YI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    144858 4p70:YI (3.68) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    144859 4p70:YN (3.68) BS01 rna ? GO:0003729 ... P60488 25128388
    144860 4p70:YO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    144861 4p70:YO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    144862 4p70:YP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    144863 4p70:YP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    144864 4p70:YQ (3.68) BS01 rna ? GO:0000049 ... P60489 25128388
    144865 4p70:YQ (3.68) BS02 rna ? GO:0000049 ... P60489 25128388
    144866 4p70:YR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    144867 4p70:YS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    144868 4p70:YS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    144869 4p70:YT (3.68) BS01 rna ? GO:0003735 ... P60490 25128388
    144870 4p70:YT (3.68) BS02 rna ? GO:0003735 ... P60490 25128388
    144871 4p70:YU (3.68) BS01 rna ? GO:0000027 ... P60491 25128388
    144872 4p70:YV (3.68) BS01 rna ? GO:0003723 ... P60492 25128388
    144873 4p70:YW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    144874 4p70:YX (3.68) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    144875 4p70:YX (3.68) BS02 MG ? GO:0000027 ... Q5SHP0 25128388
    144876 4p70:YY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    144877 4p70:YZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    144878 4p70:YZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    144879 4p72:C (2.62) BS01 2NL 6.1.1.20 GO:0000049 ... Q9I0A3 24936059 PDBbind: -logKd/Ki=4.09, IC50=82uM
    144880 4p72:D (2.62) BS01 2NL 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    144881 4p73:C (3.03) BS01 GAX 6.1.1.20 GO:0000049 ... Q9I0A3 24936059 PDBbind: -logKd/Ki=7.66, IC50=22nM
    144882 4p73:D (3.03) BS01 GAX 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    144883 4p74:C (2.7) BS01 2U9 6.1.1.20 GO:0000049 ... Q9I0A3 24936059 PDBbind: -logKd/Ki=5.00, IC50=10uM
    144884 4p74:D (2.7) BS01 2U9 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    144885 4p75:C (2.96) BS01 2NM 6.1.1.20 GO:0000049 ... Q9I0A3 24936059 PDBbind: -logKd/Ki=4.10, IC50=80uM
    144886 4p75:D (2.96) BS01 2NM 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    144887 4p77:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144888 4p77:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144889 4p7a:A (2.3) BS01 ADP ? GO:0005524 ... P40692 26249686
    144890 4p7i:A (2.6) BS01 peptide ? GO:0003779 ... P46662 24706749
    144891 4p7i:B (2.6) BS01 peptide ? GO:0003779 ... P46662 24706749
    144892 4p7m:A (3.02) BS01 2OE 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q6Q3H7 25268646 PDBbind: -logKd/Ki=7.41, Ki=39nM
    144893 4p7s:A (2.87) BS01 2OK 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q6Q3H7 25268646 PDBbind: -logKd/Ki=7.42, Ki=38nM
    144894 4p7s:B (2.87) BS01 2OK 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q6Q3H7 25268646 PDBbind: -logKd/Ki=7.42, Ki=38nM
    144895 4p7s:B (2.87) BS02 2OK 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q6Q3H7 25268646 PDBbind: -logKd/Ki=7.42, Ki=38nM
    144896 4p7s:C (2.87) BS01 2OK 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q6Q3H7 25268646
    144897 4p7u:A (1.502) BS01 1PS 2.7.11.30 GO:0005026 ... P37173 26073093
    144898 4p8b:A (1.3) BS01 X2X ? GO:0030288 ... Q0KC03 25540822
    144899 4p8c:A (1.95) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144900 4p8c:A (1.95) BS02 Y22 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.12uM
    144901 4p8c:A (1.95) BS03 2J3 N/A GO:0003885 ... N/A 25427196
    144902 4p8c:B (1.95) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144903 4p8c:B (1.95) BS02 Y22 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.12uM
    144904 4p8e:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144905 4p8e:A (2.04) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144906 4p8e:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144907 4p8e:B (2.04) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144908 4p8e:B (2.04) BS03 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144909 4p8h:A (3.0) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    144910 4p8h:A (3.0) BS02 O95 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    144911 4p8h:B (3.0) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    144912 4p8h:B (3.0) BS02 O95 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    144913 4p8k:A (2.49) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144914 4p8k:A (2.49) BS02 38C N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.041uM
    144915 4p8k:B (2.49) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144916 4p8k:B (2.49) BS02 38C N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.041uM
    144917 4p8l:A (2.02) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144918 4p8l:A (2.02) BS02 36C N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.072uM
    144919 4p8l:B (2.02) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144920 4p8l:B (2.02) BS02 36C N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.072uM
    144921 4p8m:A (2.09) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144922 4p8m:A (2.09) BS02 R58 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.088uM
    144923 4p8m:A (2.09) BS03 2J3 N/A GO:0003885 ... N/A 25427196
    144924 4p8m:B (2.09) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144925 4p8m:B (2.09) BS02 R58 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.088uM
    144926 4p8n:A (1.79) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144927 4p8n:A (1.79) BS02 R57 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.08uM
    144928 4p8n:B (1.79) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144929 4p8n:B (1.79) BS02 R57 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.08uM
    144930 4p8p:A (2.2) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144931 4p8p:A (2.2) BS02 RG2 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.05uM
    144932 4p8p:A (2.2) BS03 2J3 N/A GO:0003885 ... N/A 25427196
    144933 4p8p:B (2.2) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144934 4p8p:B (2.2) BS02 RG2 N/A GO:0003885 ... N/A 25427196 MOAD: ic50=0.05uM
    144935 4p8t:A (2.55) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    144936 4p8t:A (2.55) BS02 R26 1.1.98.3 GO:0003885 ... P9WJF1 25427196 BindingDB: IC50=67nM
    144937 4p8t:A (2.55) BS03 2J3 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    144938 4p8t:B (2.55) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    144939 4p8t:B (2.55) BS02 R26 1.1.98.3 GO:0003885 ... P9WJF1 25427196 BindingDB: IC50=67nM
    144940 4p8y:A (2.01) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144941 4p8y:A (2.01) BS02 38C N/A GO:0003885 ... N/A 25427196
    144942 4p8y:B (2.01) BS01 FAD N/A GO:0003885 ... N/A 25427196
    144943 4p9k:A (1.4) BS01 EAX ? GO:0030288 ... A1WPV4 25540822
    144944 4p9o:A (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144945 4p9o:B (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144946 4p9o:B (2.89) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144947 4p9o:C (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144948 4p9o:D (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144949 4p9p:B (2.91) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144950 4p9p:D (2.91) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144951 4p9s:A (2.32) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144952 4p9s:B (2.32) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144953 4p9u:A (3.208) BS01 dna ? GO:0000062 ... Q9KQU8 25607896
    144954 4p9u:A (3.208) BS02 dna ? GO:0000062 ... Q9KQU8 25607896
    144955 4p9u:B (3.208) BS01 dna ? GO:0000062 ... Q9KQU8 25607896
    144956 4p9u:B (3.208) BS02 dna ? GO:0000062 ... Q9KQU8 25607896
    144957 4p9u:E (3.208) BS01 dna ? GO:0000062 ... Q9KQU8 25607896
    144958 4p9u:E (3.208) BS02 dna ? GO:0000062 ... Q9KQU8 25607896
    144959 4p9u:F (3.208) BS01 dna ? GO:0000062 ... Q9KQU8 25607896
    144960 4p9u:F (3.208) BS02 dna ? GO:0000062 ... Q9KQU8 25607896
    144961 4pa0:A (2.25) BS01 2OW ? GO:0003674 ... P12883
    P42212    		 26246073 MOAD: Ki=100nM
    144962 4pa0:B (2.25) BS01 2OW ? GO:0003674 ... P12883
    P42212    		 26246073 MOAD: Ki=100nM
    144963 4pa3:A (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144964 4pa3:B (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144965 4pa3:B (3.25) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144966 4pa3:C (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144967 4pa3:D (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144968 4pa3:D (3.25) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144969 4pa4:A (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144970 4pa4:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144971 4pa4:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144972 4pa4:C (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144973 4pa4:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144974 4pa6:A (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144975 4pa6:B (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144976 4pa6:B (3.36) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144977 4pa6:C (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144978 4pa6:D (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144979 4pa7:A (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144980 4pa7:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144981 4pa7:B (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144982 4pa7:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144983 4pa7:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144984 4pa7:D (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144985 4pa9:A (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144986 4pa9:B (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144987 4pa9:B (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144988 4pa9:C (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144989 4pa9:D (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    144990 4pa9:D (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    144991 4paa:A (2.26) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144992 4paa:A (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    144993 4paa:B (2.26) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144994 4paa:B (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    144995 4pab:A (1.85) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144996 4pab:A (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    144997 4pab:B (1.85) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    144998 4pab:B (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    144999 4pae:A (3.206) BS01 HEB 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    145000 4pae:A (3.206) BS02 NIZ 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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