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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144601 4p6f:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25198768
    144602 4p6f:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25198768
    144603 4p6f:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25198768
    144604 4p6f:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25198768
    144605 4p6f:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25198768
    144606 4p6f:QN (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144607 4p6f:QN (3.6) BS02 ZN N/A GO:0003735 ... N/A 25198768
    144608 4p6f:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25198768
    144609 4p6f:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25198768
    144610 4p6f:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25198768
    144611 4p6f:QQ (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144612 4p6f:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25198768
    144613 4p6f:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25198768
    144614 4p6f:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25198768
    144615 4p6f:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25198768
    144616 4p6f:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25198768
    144617 4p6f:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 25198768
    144618 4p6f:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25198768
    144619 4p6f:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25198768
    144620 4p6f:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25198768
    144621 4p6f:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25198768
    144622 4p6f:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25198768
    144623 4p6f:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25198768
    144624 4p6f:R5 (3.6) BS02 ZN ? GO:0003735 ... P80339 25198768
    144625 4p6f:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25198768
    144626 4p6f:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25198768
    144627 4p6f:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25198768
    144628 4p6f:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25198768
    144629 4p6f:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25198768
    144630 4p6f:RD (3.6) BS02 MG ? GO:0002181 ... P60405 25198768
    144631 4p6f:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25198768
    144632 4p6f:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25198768
    144633 4p6f:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25198768
    144634 4p6f:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25198768
    144635 4p6f:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25198768
    144636 4p6f:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25198768
    144637 4p6f:RH (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144638 4p6f:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25198768
    144639 4p6f:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25198768
    144640 4p6f:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25198768
    144641 4p6f:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25198768
    144642 4p6f:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25198768
    144643 4p6f:RP (3.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25198768
    144644 4p6f:RP (3.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25198768
    144645 4p6f:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25198768
    144646 4p6f:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25198768
    144647 4p6f:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25198768
    144648 4p6f:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25198768
    144649 4p6f:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25198768
    144650 4p6f:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25198768
    144651 4p6f:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25198768
    144652 4p6f:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25198768
    144653 4p6f:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25198768
    144654 4p6f:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25198768
    144655 4p6f:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25198768
    144656 4p6f:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25198768
    144657 4p6f:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25198768
    144658 4p6f:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25198768
    144659 4p6f:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25198768
    144660 4p6f:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25198768
    144661 4p6f:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25198768
    144662 4p6f:XD (3.6) BS02 ZN ? GO:0003723 ... P80373 25198768
    144663 4p6f:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25198768
    144664 4p6f:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25198768
    144665 4p6f:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25198768
    144666 4p6f:XG (3.6) BS02 rna ? GO:0000028 ... P17291 25198768
    144667 4p6f:XH (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144668 4p6f:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25198768
    144669 4p6f:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25198768
    144670 4p6f:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25198768
    144671 4p6f:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25198768
    144672 4p6f:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25198768
    144673 4p6f:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25198768
    144674 4p6f:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25198768
    144675 4p6f:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25198768
    144676 4p6f:XM (3.6) BS04 rna ? GO:0000049 ... P80377 25198768
    144677 4p6f:XM (3.6) BS05 MG ? GO:0000049 ... P80377 25198768
    144678 4p6f:XN (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144679 4p6f:XN (3.6) BS02 ZN N/A GO:0003735 ... N/A 25198768
    144680 4p6f:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25198768
    144681 4p6f:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25198768
    144682 4p6f:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25198768
    144683 4p6f:XQ (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144684 4p6f:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25198768
    144685 4p6f:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25198768
    144686 4p6f:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25198768
    144687 4p6f:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25198768
    144688 4p6f:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25198768
    144689 4p6f:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25198768
    144690 4p6f:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25198768
    144691 4p6f:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25198768
    144692 4p6f:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25198768
    144693 4p6f:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25198768
    144694 4p6f:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25198768
    144695 4p6f:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25198768
    144696 4p6f:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25198768
    144697 4p6f:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25198768
    144698 4p6f:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25198768
    144699 4p6f:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25198768
    144700 4p6f:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25198768
    144701 4p6f:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25198768
    144702 4p6f:YD (3.6) BS02 rna ? GO:0002181 ... P60405 25198768
    144703 4p6f:YD (3.6) BS03 MG ? GO:0002181 ... P60405 25198768
    144704 4p6f:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25198768
    144705 4p6f:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25198768
    144706 4p6f:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25198768
    144707 4p6f:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25198768
    144708 4p6f:YG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25198768
    144709 4p6f:YH (3.6) BS01 rna N/A GO:0003735 ... N/A 25198768
    144710 4p6f:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25198768
    144711 4p6f:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25198768
    144712 4p6f:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25198768
    144713 4p6f:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25198768
    144714 4p6f:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25198768
    144715 4p6f:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25198768
    144716 4p6f:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25198768
    144717 4p6f:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25198768
    144718 4p6f:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25198768
    144719 4p6f:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25198768
    144720 4p6f:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25198768
    144721 4p6f:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25198768
    144722 4p6f:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25198768
    144723 4p6f:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25198768
    144724 4p6f:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25198768
    144725 4p6f:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25198768
    144726 4p6f:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25198768
    144727 4p6f:YX (3.6) BS02 MG ? GO:0000027 ... Q5SHP0 25198768
    144728 4p6f:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25198768
    144729 4p6f:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25198768
    144730 4p6f:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25198768
    144731 4p6p:A (1.862) BS01 RES 4.1.99.12 GO:0000287 ... Q9KKP2 25792735 MOAD: Ki=100uM
    144732 4p6p:A (1.862) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144733 4p6p:B (1.862) BS01 RES 4.1.99.12 GO:0000287 ... Q9KKP2 25792735 MOAD: Ki=100uM
    144734 4p6p:B (1.862) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    144735 4p6z:M (3.0) BS01 peptide ? GO:0005515 ... P35585 24843023
    144736 4p6z:S (3.0) BS01 peptide ? GO:0000139 ... P61966 24843023
    144737 4p70:QB (3.68) BS01 rna ? GO:0003735 ... P80371 25128388
    144738 4p70:QC (3.68) BS01 rna ? GO:0003676 ... P80372 25128388
    144739 4p70:QD (3.68) BS01 rna ? GO:0003723 ... P80373 25128388
    144740 4p70:QD (3.68) BS02 ZN ? GO:0003723 ... P80373 25128388
    144741 4p70:QE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    144742 4p70:QF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    144743 4p70:QG (3.68) BS01 rna ? GO:0000028 ... P17291 25128388
    144744 4p70:QH (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144745 4p70:QI (3.68) BS01 rna ? GO:0000049 ... P80374 25128388
    144746 4p70:QI (3.68) BS02 rna ? GO:0000049 ... P80374 25128388
    144747 4p70:QJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    144748 4p70:QJ (3.68) BS02 rna ? GO:0000049 ... Q5SHN7 25128388
    144749 4p70:QK (3.68) BS01 rna ? GO:0003735 ... P80376 25128388
    144750 4p70:QL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    144751 4p70:QM (3.68) BS01 rna ? GO:0000049 ... P80377 25128388
    144752 4p70:QM (3.68) BS02 rna ? GO:0000049 ... P80377 25128388
    144753 4p70:QM (3.68) BS03 MG ? GO:0000049 ... P80377 25128388
    144754 4p70:QN (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144755 4p70:QN (3.68) BS02 ZN N/A GO:0003735 ... N/A 25128388
    144756 4p70:QO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    144757 4p70:QO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    144758 4p70:QP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    144759 4p70:QQ (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144760 4p70:QR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    144761 4p70:QS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    144762 4p70:QT (3.68) BS01 rna ? GO:0003723 ... P80380 25128388
    144763 4p70:R0 (3.68) BS01 rna ? GO:0003735 ... P60493 25128388
    144764 4p70:R0 (3.68) BS02 rna ? GO:0003735 ... P60493 25128388
    144765 4p70:R0 (3.68) BS03 rna ? GO:0003735 ... P60493 25128388
    144766 4p70:R1 (3.68) BS01 rna ? GO:0003735 ... P60494 25128388
    144767 4p70:R2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    144768 4p70:R3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    144769 4p70:R3 (3.68) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    144770 4p70:R4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    144771 4p70:R4 (3.68) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    144772 4p70:R5 (3.68) BS01 rna ? GO:0003735 ... P80339 25128388
    144773 4p70:R6 (3.68) BS01 rna ? GO:0000049 ... P35871 25128388
    144774 4p70:R7 (3.68) BS01 rna ? GO:0003735 ... P80340 25128388
    144775 4p70:R8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    144776 4p70:R9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    144777 4p70:RD (3.68) BS01 rna ? GO:0002181 ... P60405 25128388
    144778 4p70:RD (3.68) BS02 rna ? GO:0002181 ... P60405 25128388
    144779 4p70:RE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    144780 4p70:RF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    144781 4p70:RF (3.68) BS02 MG ? GO:0003735 ... Q5SHN9 25128388
    144782 4p70:RG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    144783 4p70:RG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    144784 4p70:RG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 25128388
    144785 4p70:RH (3.68) BS01 rna N/A GO:0003735 ... N/A 25128388
    144786 4p70:RI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    144787 4p70:RN (3.68) BS01 rna ? GO:0003729 ... P60488 25128388
    144788 4p70:RO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    144789 4p70:RO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    144790 4p70:RP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    144791 4p70:RP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    144792 4p70:RP (3.68) BS03 MG ? GO:0003735 ... Q5SHQ7 25128388
    144793 4p70:RQ (3.68) BS01 rna ? GO:0000049 ... P60489 25128388
    144794 4p70:RQ (3.68) BS02 rna ? GO:0000049 ... P60489 25128388
    144795 4p70:RR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    144796 4p70:RS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    144797 4p70:RS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    144798 4p70:RT (3.68) BS01 rna ? GO:0003735 ... P60490 25128388
    144799 4p70:RT (3.68) BS02 rna ? GO:0003735 ... P60490 25128388
    144800 4p70:RU (3.68) BS01 rna ? GO:0000027 ... P60491 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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