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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143801 4oma:A (1.6) BS01 LCS 4.4.1.11 GO:0005737 ... Q84AR1 25398880 PDBbind: -logKd/Ki=4.17, Ki=68uM
    143802 4ome:A (1.79) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 N/A
    143803 4ome:A (1.79) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 N/A
    143804 4ome:A (1.79) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 N/A
    143805 4ome:A (1.79) BS04 DGQ 3.4.17.21 GO:0004180 ... Q04609 N/A
    143806 4omw:C (2.3) BS01 SO4 ? GO:0005576 ... P02756 25450833
    143807 4omw:C (2.3) BS02 SO4 ? GO:0005576 ... P02756 25450833
    143808 4omw:D (2.3) BS01 TE4 ? GO:0005576 ... P02756 25450833
    143809 4omx:A (2.3) BS01 SO4 ? GO:0005576 ... P02756 25450833
    143810 4omx:A (2.3) BS02 SO4 ? GO:0005576 ... P02756 25450833
    143811 4omx:A (2.3) BS03 ARF ? GO:0005576 ... P02756 25450833
    143812 4omx:A (2.3) BS04 ARF ? GO:0005576 ... P02756 25450833
    143813 4on1:A (2.13) BS01 ZN ? GO:0004222 ... O68424 24698179
    143814 4on1:B (2.13) BS01 ZN ? GO:0004222 ... O68424 24698179
    143815 4ona:A (2.4) BS01 UW1 2.7.11.17 GO:0004672 ... Q9BJF5 24494061 MOAD: ic50=0.002uM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=2.00nM
    143816 4onc:A (1.83) BS01 40B 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 24475925 MOAD: Kd=410nM
    143817 4onc:B (1.83) BS01 40B 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 24475925 MOAD: Kd=410nM
    143818 4onc:B (1.83) BS02 40B 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 24475925 MOAD: Kd=410nM
    143819 4onm:B (1.35) BS01 N2F 2.3.2.23 GO:0000151 ... P61088 25909880
    143820 4onn:B (1.5) BS01 BY1 2.3.2.23 GO:0000151 ... P61088 25909880
    143821 4ono:A (2.705) BS01 PMK ? GO:0000139 ... P29016
    P29017
    P61769    		 25298532 PDBbind: -logKd/Ki=5.19, Kd=6.5uM
    143822 4onv:A (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    143823 4onv:B (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    143824 4onv:C (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    143825 4onv:D (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    143826 4oo1:E (3.3) BS01 MG ? GO:0000176 ... Q12277 25043052
    143827 4oo7:A (1.65) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143828 4oo7:B (1.65) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143829 4oo9:A (2.6) BS01 2U8 3.2.1.17 GO:0003796 ... P00720
    P41594    		 25042998 PDBbind: -logKd/Ki=9.07, Kd=0.86nM
    143830 4ooa:A (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143831 4ooa:B (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143832 4ooa:C (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143833 4ooa:D (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143834 4ooa:E (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143835 4ooa:F (1.58) BS01 FES ? GO:0010506 ... Q8N5K1 24914968
    143836 4ood:A (1.24) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 25372675
    143837 4ook:A (1.9) BS01 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    143838 4ook:A (1.9) BS02 CO 3.4.11.18 GO:0004177 ... P9WK19 24841365
    143839 4ool:A (2.3) BS01 2U2 N/A GO:0005886 ... N/A 24694215 PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    143840 4oom:A (2.0) BS01 2U3 N/A GO:0005886 ... N/A 24694215
    143841 4oon:A (3.2) BS01 2U4 2.4.99.28
    3.4.16.4    		 GO:0004180 ... Q07806 24694215 PDBbind: -logKd/Ki=7.52, IC50=0.030uM
    143842 4ooo:A (2.15) BS01 RU0 3.2.1.17 GO:0003796 ... P00698 24796316
    143843 4ooo:A (2.15) BS02 RU0 3.2.1.17 GO:0003796 ... P00698 24796316
    143844 4ooy:A (1.1) BS01 NXL 3.5.2.6 GO:0008800 ... P24735 25022578
    143845 4op0:A (1.7) BS01 BT5 6.3.4.15 GO:0004077 ... I6YFP0 24723382
    143846 4op0:B (1.7) BS01 BT5 6.3.4.15 GO:0004077 ... I6YFP0 24723382
    143847 4op1:A (2.39) BS01 2UW ? GO:0004857 ... Q14397 25914941 PDBbind: -logKd/Ki=6.89, IC50=0.129uM
    143848 4op1:A (2.39) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143849 4op1:B (2.39) BS01 2UW ? GO:0004857 ... Q14397 25914941
    143850 4op1:B (2.39) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143851 4op2:A (2.24) BS01 2UX ? GO:0004857 ... Q14397 25914941 PDBbind: -logKd/Ki=5.93, IC50=1.176uM
    143852 4op2:A (2.24) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143853 4op2:B (2.24) BS01 2UX ? GO:0004857 ... Q14397 25914941
    143854 4op2:B (2.24) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143855 4op3:A (2.82) BS01 2UY ? GO:0004857 ... Q14397 25914941 PDBbind: -logKd/Ki=8.15, IC50=7nM
    143856 4op3:A (2.82) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143857 4op3:B (2.82) BS01 2UY ? GO:0004857 ... Q14397 25914941
    143858 4op3:B (2.82) BS02 S6P ? GO:0004857 ... Q14397 25914941
    143859 4op6:A (1.65) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 24657440
    143860 4op6:A (1.65) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 24657440
    143861 4op9:A (1.58) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 24657440
    143862 4opn:A (2.1) BS01 ZN 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143863 4opn:A (2.1) BS02 ZBF 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143864 4opn:A (2.1) BS03 ZBF 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143865 4opn:B (2.1) BS01 ZBF 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143866 4opn:B (2.1) BS02 ZN 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143867 4opn:B (2.1) BS03 ZBF 4.4.1.5 GO:0004462 ... Q9CPU0 N/A
    143868 4opp:A (2.3) BS01 11Z ? GO:0001818 ... Q9GK12 N/A
    143869 4opp:B (2.3) BS01 11Z ? GO:0001818 ... Q9GK12 N/A
    143870 4opp:C (2.3) BS01 11Z ? GO:0001818 ... Q9GK12 N/A
    143871 4opp:D (2.3) BS01 11Z ? GO:0001818 ... Q9GK12 N/A
    143872 4opp:D (2.3) BS02 11Z ? GO:0001818 ... Q9GK12 N/A
    143873 4oq3:A (2.3) BS01 2V8 2.3.2.27 GO:0005634 ... Q00987 24704029 MOAD: ic50=0.008uM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8.0nM
    143874 4oq3:A (2.3) BS02 2V8 2.3.2.27 GO:0005634 ... Q00987 24704029 MOAD: ic50=0.008uM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8.0nM
    143875 4oq3:B (2.3) BS01 2V8 2.3.2.27 GO:0005634 ... Q00987 24704029 MOAD: ic50=0.008uM
    BindingDB: IC50=8.0nM
    143876 4oq3:C (2.3) BS01 2V8 2.3.2.27 GO:0005634 ... Q00987 24704029 MOAD: ic50=0.008uM
    BindingDB: IC50=8.0nM
    143877 4oq3:D (2.3) BS01 2V8 2.3.2.27 GO:0005634 ... Q00987 24704029 MOAD: ic50=0.008uM
    BindingDB: IC50=8.0nM
    143878 4oq8:A (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143879 4oq8:A (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143880 4oq8:A (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143881 4oq9:A (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143882 4oq9:A (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143883 4oq9:A (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143884 4oq9:A (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143885 4oq9:B (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143886 4oq9:B (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143887 4oq9:B (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143888 4oq9:C (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143889 4oq9:C (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143890 4oq9:C (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143891 4oq9:D (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143892 4oq9:D (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143893 4oq9:D (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143894 4oq9:D (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143895 4oq9:E (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143896 4oq9:E (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143897 4oq9:E (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143898 4oq9:E (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143899 4oq9:E (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    143900 4oq9:E (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    143901 4oq9:F (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143902 4oq9:F (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143903 4oq9:F (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143904 4oq9:F (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143905 4oq9:F (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    143906 4oq9:F (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    143907 4oq9:G (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143908 4oq9:G (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143909 4oq9:G (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143910 4oq9:H (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143911 4oq9:H (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143912 4oq9:H (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143913 4oq9:I (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143914 4oq9:I (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143915 4oq9:I (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143916 4oq9:I (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143917 4oq9:J (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143918 4oq9:J (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143919 4oq9:J (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143920 4oq9:J (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143921 4oq9:J (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    143922 4oq9:J (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    143923 4oq9:J (1.45) BS07 rna ? GO:0005198 ... P17574 25195746
    143924 4oq9:K (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143925 4oq9:K (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143926 4oq9:K (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143927 4oq9:K (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143928 4oq9:K (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    143929 4oq9:K (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    143930 4oq9:L (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143931 4oq9:L (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143932 4oq9:L (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143933 4oq9:M (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143934 4oq9:M (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143935 4oq9:M (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143936 4oq9:N (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143937 4oq9:N (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143938 4oq9:N (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143939 4oq9:O (1.45) BS01 rna ? GO:0005198 ... P17574 25195746
    143940 4oq9:O (1.45) BS02 rna ? GO:0005198 ... P17574 25195746
    143941 4oq9:O (1.45) BS03 rna ? GO:0005198 ... P17574 25195746
    143942 4oq9:O (1.45) BS04 rna ? GO:0005198 ... P17574 25195746
    143943 4oq9:O (1.45) BS05 rna ? GO:0005198 ... P17574 25195746
    143944 4oq9:O (1.45) BS06 rna ? GO:0005198 ... P17574 25195746
    143945 4oqc:A (1.3) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    143946 4oqc:A (1.3) BS02 NA 1.7.3.3 GO:0004846 ... Q00511 25005084
    143947 4oqv:A (1.23) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 24801997
    143948 4oqv:A (1.23) BS02 2V6 1.3.5.2 GO:0004151 ... Q02127 24801997 MOAD: ic50=1.6uM
    BindingDB: IC50=1600nM
    143949 4or0:A (2.58) BS01 NPS ? GO:0003677 ... P02769 24753230 PDBbind: -logKd/Ki=7.46, Kd=35nM
    143950 4or0:A (2.58) BS02 NPS ? GO:0003677 ... P02769 24753230 PDBbind: -logKd/Ki=7.46, Kd=35nM
    143951 4or0:A (2.58) BS03 NPS ? GO:0003677 ... P02769 24753230 PDBbind: -logKd/Ki=7.46, Kd=35nM
    143952 4or0:B (2.58) BS01 NPS ? GO:0003677 ... P02769 24753230
    143953 4or0:B (2.58) BS02 NPS ? GO:0003677 ... P02769 24753230
    143954 4or0:B (2.58) BS03 NPS ? GO:0003677 ... P02769 24753230
    143955 4or2:A (2.8) BS01 FM9 ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143956 4or2:A (2.8) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143957 4or2:A (2.8) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143958 4or2:A (2.8) BS04 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143959 4or2:A (2.8) BS05 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143960 4or2:B (2.8) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143961 4or2:B (2.8) BS02 FM9 ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143962 4or2:B (2.8) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143963 4or2:B (2.8) BS04 CLR ? GO:0004930 ... P0ABE7
    Q13255    		 24603153
    143964 4or5:C (2.9) BS01 ZN ? GO:0001070 ... P04608 24727379
    143965 4or5:C (2.9) BS02 ZN ? GO:0001070 ... P04608 24727379
    143966 4or5:H (2.9) BS01 ZN ? GO:0001070 ... P04608 24727379
    143967 4or5:H (2.9) BS02 ZN ? GO:0001070 ... P04608 24727379
    143968 4or9:A (2.23) BS01 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    143969 4or9:A (2.23) BS02 ZN 3.1.3.16 GO:0001913 ... P16298 N/A
    143970 4or9:B (2.23) BS01 CA ? GO:0001569 ... P63098 N/A
    143971 4or9:B (2.23) BS02 CA ? GO:0001569 ... P63098 N/A
    143972 4or9:B (2.23) BS03 CA ? GO:0001569 ... P63098 N/A
    143973 4or9:B (2.23) BS04 CA ? GO:0001569 ... P63098 N/A
    143974 4ora:A (2.747) BS01 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    143975 4ora:B (2.747) BS01 CA ? GO:0001569 ... P63098 N/A
    143976 4ora:B (2.747) BS02 CA ? GO:0001569 ... P63098 N/A
    143977 4ora:B (2.747) BS03 CA ? GO:0001569 ... P63098 N/A
    143978 4ora:B (2.747) BS04 CA ? GO:0001569 ... P63098 N/A
    143979 4orb:A (3.108) BS01 ZN 3.1.3.16 GO:0000082 ... P63328 N/A
    143980 4orb:A (3.108) BS02 FE 3.1.3.16 GO:0000082 ... P63328 N/A
    143981 4orb:B (3.108) BS01 CA ? GO:0001569 ... Q63810 N/A
    143982 4orb:B (3.108) BS02 CA ? GO:0001569 ... Q63810 N/A
    143983 4orb:B (3.108) BS03 CA ? GO:0001569 ... Q63810 N/A
    143984 4orb:B (3.108) BS04 CA ? GO:0001569 ... Q63810 N/A
    143985 4orc:A (2.7) BS01 ZN 3.1.3.16 GO:0001913 ... P16298 N/A
    143986 4orc:A (2.7) BS02 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    143987 4orc:B (2.7) BS01 CA ? GO:0001569 ... P63098 N/A
    143988 4orc:B (2.7) BS02 CA ? GO:0001569 ... P63098 N/A
    143989 4orc:B (2.7) BS03 CA ? GO:0001569 ... P63098 N/A
    143990 4orc:B (2.7) BS04 CA ? GO:0001569 ... P63098 N/A
    143991 4ore:X (2.2) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    143992 4ore:X (2.2) BS02 OAS 2.5.1.47 GO:0004124 ... P45040 N/A
    143993 4ori:A (1.5) BS01 FMN 1.3.5.2 GO:0004151 ... Q63707 24801997
    143994 4ori:A (1.5) BS02 2V6 1.3.5.2 GO:0004151 ... Q63707 24801997 MOAD: ic50=0.088uM
    BindingDB: IC50=49nM
    143995 4orm:A (2.07) BS01 2V6 1.3.5.2 GO:0004152 ... Q08210 24801997 MOAD: ic50=0.0018uM
    BindingDB: IC50=22nM
    143996 4orm:A (2.07) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 24801997
    143997 4orv:D (2.5) BS01 XXC ? GO:0001818 ... Q9GK12 N/A
    143998 4osf:A (1.62) BS01 4MT 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25743213 PDBbind: -logKd/Ki=5.44, IC50=3.6uM
    143999 4osf:A (1.62) BS02 4MT 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25743213 PDBbind: -logKd/Ki=5.44, IC50=3.6uM
    144000 4osf:B (1.62) BS01 4MT 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25743213
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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