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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    142201 4ngp:A (1.63) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142202 4ngp:A (1.63) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142203 4ngp:A (1.63) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 24954515
    142204 4ngq:A (2.08) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142205 4ngq:A (2.08) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142206 4ngq:A (2.08) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 24954515
    142207 4ngq:A (2.08) BS04 J37 3.4.17.21 GO:0004180 ... Q04609 24954515 PDBbind: -logKd/Ki=8.80, Ki=1.570nM
    142208 4ngr:A (1.9) BS01 J21 3.4.17.21 GO:0004180 ... Q04609 24954515 PDBbind: -logKd/Ki=7.55, Ki=28.1nM
    BindingDB: Ki=0.268000nM
    142209 4ngr:A (1.9) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142210 4ngr:A (1.9) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142211 4ngr:A (1.9) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 24954515
    142212 4ngs:A (1.68) BS01 J34 3.4.17.21 GO:0004180 ... Q04609 24954515 PDBbind: -logKd/Ki=8.12, Ki=7.6nM
    BindingDB: Ki=0.377000nM
    142213 4ngs:A (1.68) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142214 4ngs:A (1.68) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142215 4ngs:A (1.68) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 24954515
    142216 4ngt:A (2.31) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142217 4ngt:A (2.31) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 24954515
    142218 4ngt:A (2.31) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 24954515
    142219 4ngt:A (2.31) BS04 J42 3.4.17.21 GO:0004180 ... Q04609 24954515 PDBbind: -logKd/Ki=8.41, Ki=3.88nM
    BindingDB: Ki=3.9nM
    142220 4ngw:A (1.37) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    142221 4ngy:A (1.35) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    142222 4ngz:A (1.7) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    142223 4nh1:C (3.3) BS01 ZN ? GO:0000785 ... P67870 24594356
    142224 4nh1:D (3.3) BS01 ZN ? GO:0000785 ... P67870 24594356
    142225 4nh2:A (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142226 4nh2:A (2.3) BS02 P6L N/A GO:0008519 ... N/A 24899312
    142227 4nh2:B (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142228 4nh2:B (2.3) BS02 P6L N/A GO:0008519 ... N/A 24899312
    142229 4nh2:C (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142230 4nh2:C (2.3) BS02 P6L N/A GO:0008519 ... N/A 24899312
    142231 4nh2:D (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142232 4nh2:E (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142233 4nh2:F (2.3) BS01 P6L N/A GO:0008519 ... N/A 24899312
    142234 4nh2:F (2.3) BS02 P6L N/A GO:0008519 ... N/A 24899312
    142235 4nhd:A (1.78) BS01 COA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142236 4nhd:A (1.78) BS02 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142237 4nhd:B (1.78) BS01 COA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142238 4nhd:B (1.78) BS02 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142239 4nhd:B (1.78) BS03 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142240 4nhd:C (1.78) BS01 COA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142241 4nhd:C (1.78) BS02 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142242 4nhd:C (1.78) BS03 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142243 4nhd:D (1.78) BS01 COA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142244 4nhd:D (1.78) BS02 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142245 4nhd:D (1.78) BS03 CA 2.3.1.180 GO:0004315 ... Q9KQH5 N/A
    142246 4nhf:B (2.0) BS01 CA ? GO:0016020 ... C6AAT5 26646013
    142247 4nhf:C (2.0) BS01 CA ? GO:0016020 ... C6AAT5 26646013
    142248 4nhf:F (2.0) BS01 CA ? GO:0016020 ... C6AAT5 26646013
    142249 4nhk:A (1.9) BS01 MN 1.14.11.- GO:0000288 ... P40032 25728928
    142250 4nhk:A (1.9) BS02 PD2 1.14.11.- GO:0000288 ... P40032 25728928
    142251 4nhl:A (2.84) BS01 MN 1.14.11.- GO:0000288 ... P40032 25728928
    142252 4nhl:A (2.84) BS02 OGA 1.14.11.- GO:0000288 ... P40032 25728928
    142253 4nhm:A (1.9) BS01 UN9 1.14.11.- GO:0000288 ... P40032 25728928
    142254 4nhm:A (1.9) BS02 MN 1.14.11.- GO:0000288 ... P40032 25728928
    142255 4nhp:A (1.42) BS01 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142256 4nhp:A (1.42) BS02 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142257 4nhq:A (1.92) BS01 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142258 4nhq:A (1.92) BS02 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142259 4nhq:A (1.92) BS03 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142260 4nhs:A (1.99) BS01 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142261 4nht:A (1.65) BS01 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142262 4nht:A (1.65) BS02 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142263 4nht:A (1.65) BS03 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142264 4nht:A (1.65) BS04 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142265 4nht:A (1.65) BS05 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142266 4nhx:A (2.105) BS01 MN 1.14.11.- GO:0005506 ... Q8N543 25728928
    142267 4nhx:A (2.105) BS02 OGA 1.14.11.- GO:0005506 ... Q8N543 25728928 PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    142268 4nhy:A (2.603) BS01 MN 1.14.11.- GO:0005506 ... Q8N543 25728928
    142269 4nhy:A (2.603) BS02 PD2 1.14.11.- GO:0005506 ... Q8N543 25728928 PDBbind: -logKd/Ki=5.64, IC50=2.3uM
    142270 4nhy:B (2.603) BS01 MN 1.14.11.- GO:0005506 ... Q8N543 25728928
    142271 4nhy:B (2.603) BS02 PD2 1.14.11.- GO:0005506 ... Q8N543 25728928
    142272 4nhy:C (2.603) BS01 MN 1.14.11.- GO:0005506 ... Q8N543 25728928
    142273 4nhy:C (2.603) BS02 PD2 1.14.11.- GO:0005506 ... Q8N543 25728928
    142274 4nhy:D (2.603) BS01 MN 1.14.11.- GO:0005506 ... Q8N543 25728928
    142275 4nhy:D (2.603) BS02 PD2 1.14.11.- GO:0005506 ... Q8N543 25728928
    142276 4ni0:A (2.15) BS01 HEM ? GO:0004601 ... P69905 25061917
    142277 4ni0:A (2.15) BS02 2P3 ? GO:0004601 ... P69905 25061917
    142278 4ni0:A (2.15) BS03 2P3 ? GO:0004601 ... P69905 25061917
    142279 4ni0:A (2.15) BS04 2P3 ? GO:0004601 ... P69905 25061917
    142280 4ni0:B (2.15) BS01 HEM ? GO:0004601 ... P68871 25061917
    142281 4ni0:B (2.15) BS02 2P3 ? GO:0004601 ... P68871 25061917
    142282 4ni0:B (2.15) BS03 2P3 ? GO:0004601 ... P68871 25061917
    142283 4ni1:A (1.9) BS01 HEM ? GO:0004601 ... P69905 25061917
    142284 4ni1:A (1.9) BS02 2JX ? GO:0004601 ... P69905 25061917
    142285 4ni1:A (1.9) BS03 2JX ? GO:0004601 ... P69905 25061917
    142286 4ni1:A (1.9) BS04 2JX ? GO:0004601 ... P69905 25061917
    142287 4ni1:B (1.9) BS01 2JX ? GO:0004601 ... P68871 25061917
    142288 4ni1:B (1.9) BS02 HEM ? GO:0004601 ... P68871 25061917
    142289 4ni1:B (1.9) BS03 2JX ? GO:0004601 ... P68871 25061917
    142290 4ni1:B (1.9) BS04 2JX ? GO:0004601 ... P68871 25061917
    142291 4ni7:A (2.4) BS01 dna ? GO:0005125 ... P05231 24415767 PDBbind: Kd=0.2nM
    142292 4ni8:A (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142293 4ni8:A (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142294 4ni8:B (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142295 4ni8:B (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142296 4ni8:C (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142297 4ni8:C (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142298 4ni8:D (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142299 4ni8:D (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142300 4ni8:E (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142301 4ni8:E (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142302 4ni8:F (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142303 4ni8:F (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142304 4ni8:G (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142305 4ni8:G (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142306 4ni8:H (1.64) BS01 MN ? GO:0005737 ... Q8RJ47 N/A
    142307 4ni8:H (1.64) BS02 1WB ? GO:0005737 ... Q8RJ47 N/A
    142308 4ni9:A (2.55) BS01 dna ? GO:0005125 ... P05231 24415767
    142309 4ni9:A (2.55) BS02 dna ? GO:0005125 ... P05231 24415767
    142310 4ni9:C (2.55) BS01 dna ? GO:0005125 ... P05231 24415767
    142311 4ni9:C (2.55) BS02 dna ? GO:0005125 ... P05231 24415767
    142312 4nia:A (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142313 4nia:A (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142314 4nia:A (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142315 4nia:A (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142316 4nia:A (1.82) BS05 rna ? GO:0005198 ... P17574 25195746
    142317 4nia:B (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142318 4nia:B (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142319 4nia:C (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142320 4nia:C (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142321 4nia:D (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142322 4nia:D (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142323 4nia:D (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142324 4nia:E (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142325 4nia:E (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142326 4nia:E (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142327 4nia:E (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142328 4nia:E (1.82) BS05 rna ? GO:0005198 ... P17574 25195746
    142329 4nia:E (1.82) BS06 rna ? GO:0005198 ... P17574 25195746
    142330 4nia:F (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142331 4nia:F (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142332 4nia:F (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142333 4nia:F (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142334 4nia:F (1.82) BS05 rna ? GO:0005198 ... P17574 25195746
    142335 4nia:G (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142336 4nia:G (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142337 4nia:G (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142338 4nia:H (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142339 4nia:H (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142340 4nia:H (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142341 4nia:I (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142342 4nia:J (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142343 4nia:J (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142344 4nia:J (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142345 4nia:J (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142346 4nia:J (1.82) BS05 rna ? GO:0005198 ... P17574 25195746
    142347 4nia:K (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142348 4nia:K (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142349 4nia:K (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142350 4nia:K (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142351 4nia:K (1.82) BS05 rna ? GO:0005198 ... P17574 25195746
    142352 4nia:L (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142353 4nia:L (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142354 4nia:M (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142355 4nia:M (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142356 4nia:N (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142357 4nia:N (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142358 4nia:O (1.82) BS01 rna ? GO:0005198 ... P17574 25195746
    142359 4nia:O (1.82) BS02 rna ? GO:0005198 ... P17574 25195746
    142360 4nia:O (1.82) BS03 rna ? GO:0005198 ... P17574 25195746
    142361 4nia:O (1.82) BS04 rna ? GO:0005198 ... P17574 25195746
    142362 4nib:B (1.4) BS01 peptide ? GO:0005179 ... P01308 25092300
    142363 4nid:A (1.58) BS01 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142364 4nid:A (1.58) BS02 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142365 4nid:A (1.58) BS03 MN 1.14.11.33 GO:0005515 ... P05050 24596302
    142366 4nid:A (1.58) BS04 AKG 1.14.11.33 GO:0005515 ... P05050 24596302
    142367 4nie:A (2.01) BS01 peptide ? GO:0003677 ... P51449 24900774
    142368 4nie:A (2.01) BS02 peptide ? GO:0003677 ... P51449 24900774
    142369 4nie:A (2.01) BS03 NBH ? GO:0003677 ... P51449 24900774 PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: EC50=20nM, IC50=>25000nM
    142370 4nie:A (2.01) BS04 DMX ? GO:0003677 ... P51449 24900774
    142371 4nie:A (2.01) BS05 DMX ? GO:0003677 ... P51449 24900774
    142372 4nie:B (2.01) BS01 peptide ? GO:0003677 ... P51449 24900774
    142373 4nie:B (2.01) BS02 peptide ? GO:0003677 ... P51449 24900774
    142374 4nie:B (2.01) BS03 DMX ? GO:0003677 ... P51449 24900774
    142375 4nie:B (2.01) BS04 NBH ? GO:0003677 ... P51449 24900774 BindingDB: EC50=20nM, IC50=>25000nM
    142376 4nie:B (2.01) BS05 DMX ? GO:0003677 ... P51449 24900774
    142377 4nif:B (2.15) BS01 ANP 2.7.11.24 GO:0000165 ... P28482 25730857
    142378 4nif:E (2.15) BS01 ANP 2.7.11.24 GO:0000165 ... P28482 25730857
    142379 4nig:A (1.52) BS01 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142380 4nig:A (1.52) BS02 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142381 4nig:A (1.52) BS03 MN 1.14.11.33 GO:0005515 ... P05050 24596302
    142382 4nig:A (1.52) BS04 AKG 1.14.11.33 GO:0005515 ... P05050 24596302
    142383 4nih:A (1.374) BS01 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142384 4nih:A (1.374) BS02 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142385 4nih:A (1.374) BS03 MN 1.14.11.33 GO:0005515 ... P05050 24596302
    142386 4nih:A (1.374) BS04 AKG 1.14.11.33 GO:0005515 ... P05050 24596302
    142387 4nii:A (1.622) BS01 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142388 4nii:A (1.622) BS02 dna 1.14.11.33 GO:0005515 ... P05050 24596302
    142389 4nii:A (1.622) BS03 MN 1.14.11.33 GO:0005515 ... P05050 24596302
    142390 4nii:A (1.622) BS04 AKG 1.14.11.33 GO:0005515 ... P05050 24596302
    142391 4nij:A (1.86) BS01 2T8 3.2.1.17 GO:0003796 ... P00698 25215611
    142392 4nil:A (2.18) BS01 2O8 2.5.1.15 GO:0004156 ... Q81VW8 24650357
    142393 4nir:A (1.772) BS01 6DH 2.5.1.15 GO:0004156 ... Q81VW8 24650357
    142394 4nir:A (1.772) BS02 6DH 2.5.1.15 GO:0004156 ... Q81VW8 24650357
    142395 4nir:B (1.772) BS01 6DH 2.5.1.15 GO:0004156 ... Q81VW8 24650357
    142396 4niv:A (1.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 24520050
    142397 4niw:A (1.31) BS01 CA 3.4.21.4 GO:0004175 ... P00760 24520050
    142398 4nix:A (1.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 24520050
    142399 4nix:A (1.3) BS02 ZN 3.4.21.4 GO:0004175 ... P00760 24520050
    142400 4niy:A (2.84) BS01 CA 3.4.21.4 GO:0004175 ... P00760 24520050
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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