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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139401 4lsk:Y0 (3.48001) BS03 rna ? GO:0003735 ... P60493 25128388
    139402 4lsk:Y1 (3.48001) BS01 rna ? GO:0003735 ... P60494 25128388
    139403 4lsk:Y2 (3.48001) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    139404 4lsk:Y3 (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    139405 4lsk:Y3 (3.48001) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    139406 4lsk:Y4 (3.48001) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    139407 4lsk:Y4 (3.48001) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    139408 4lsk:Y5 (3.48001) BS01 rna ? GO:0003735 ... P80339 25128388
    139409 4lsk:Y6 (3.48001) BS01 rna ? GO:0000049 ... P35871 25128388
    139410 4lsk:Y7 (3.48001) BS01 rna ? GO:0003735 ... P80340 25128388
    139411 4lsk:Y8 (3.48001) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    139412 4lsk:Y9 (3.48001) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    139413 4lsk:YD (3.48001) BS01 rna ? GO:0002181 ... P60405 25128388
    139414 4lsk:YD (3.48001) BS02 MG ? GO:0002181 ... P60405 25128388
    139415 4lsk:YE (3.48001) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    139416 4lsk:YF (3.48001) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    139417 4lsk:YG (3.48001) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    139418 4lsk:YG (3.48001) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    139419 4lsk:YH (3.48001) BS01 rna N/A GO:0003735 ... N/A 25128388
    139420 4lsk:YI (3.48001) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    139421 4lsk:YI (3.48001) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    139422 4lsk:YN (3.48001) BS01 rna ? GO:0003729 ... P60488 25128388
    139423 4lsk:YO (3.48001) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    139424 4lsk:YO (3.48001) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    139425 4lsk:YP (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    139426 4lsk:YP (3.48001) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    139427 4lsk:YQ (3.48001) BS01 rna ? GO:0000049 ... P60489 25128388
    139428 4lsk:YQ (3.48001) BS02 rna ? GO:0000049 ... P60489 25128388
    139429 4lsk:YR (3.48001) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    139430 4lsk:YS (3.48001) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    139431 4lsk:YS (3.48001) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    139432 4lsk:YT (3.48001) BS01 rna ? GO:0003735 ... P60490 25128388
    139433 4lsk:YT (3.48001) BS02 rna ? GO:0003735 ... P60490 25128388
    139434 4lsk:YU (3.48001) BS01 rna ? GO:0000027 ... P60491 25128388
    139435 4lsk:YV (3.48001) BS01 rna ? GO:0003723 ... P60492 25128388
    139436 4lsk:YW (3.48001) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    139437 4lsk:YX (3.48001) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    139438 4lsk:YY (3.48001) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    139439 4lsk:YZ (3.48001) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    139440 4lsk:YZ (3.48001) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    139441 4lsq:G (2.25) BS01 BU3 ? GO:0019031 ... Q0ED31 23911655
    139442 4lt0:A (2.1) BS01 QPT 3.2.1.17 GO:0003796 ... P00698 25195881
    139443 4lt2:A (2.0) BS01 QPT 3.2.1.17 GO:0003796 ... P00698 N/A
    139444 4lt3:A (2.0) BS01 QPT 3.2.1.17 GO:0003796 ... P00698 25195881
    139445 4lt6:A (2.79) BS01 3AT 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    139446 4lt6:A (2.79) BS02 CA 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    139447 4lt6:B (2.79) BS01 3AT 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    139448 4lt6:B (2.79) BS02 CA 2.7.7.19 GO:0003723 ... Q9BWT3 24076191
    139449 4lt7:A (2.5) BS01 CA ? GO:0016020 ... P47709 24302762
    139450 4lt8:QB (3.14) BS01 rna ? GO:0003735 ... P80371 25128388
    139451 4lt8:QC (3.14) BS01 rna ? GO:0003676 ... P80372 25128388
    139452 4lt8:QD (3.14) BS01 rna ? GO:0003723 ... P80373 25128388
    139453 4lt8:QD (3.14) BS02 ZN ? GO:0003723 ... P80373 25128388
    139454 4lt8:QE (3.14) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    139455 4lt8:QF (3.14) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    139456 4lt8:QF (3.14) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    139457 4lt8:QG (3.14) BS01 rna ? GO:0000028 ... P17291 25128388
    139458 4lt8:QH (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139459 4lt8:QH (3.14) BS02 MG N/A GO:0003735 ... N/A 25128388
    139460 4lt8:QI (3.14) BS01 rna ? GO:0000049 ... P80374 25128388
    139461 4lt8:QI (3.14) BS02 rna ? GO:0000049 ... P80374 25128388
    139462 4lt8:QJ (3.14) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    139463 4lt8:QJ (3.14) BS02 rna ? GO:0000049 ... Q5SHN7 25128388
    139464 4lt8:QK (3.14) BS01 rna ? GO:0003735 ... P80376 25128388
    139465 4lt8:QL (3.14) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    139466 4lt8:QM (3.14) BS01 rna ? GO:0000049 ... P80377 25128388
    139467 4lt8:QM (3.14) BS02 rna ? GO:0000049 ... P80377 25128388
    139468 4lt8:QM (3.14) BS03 MG ? GO:0000049 ... P80377 25128388
    139469 4lt8:QN (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139470 4lt8:QN (3.14) BS02 ZN N/A GO:0003735 ... N/A 25128388
    139471 4lt8:QO (3.14) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    139472 4lt8:QO (3.14) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    139473 4lt8:QP (3.14) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    139474 4lt8:QQ (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139475 4lt8:QR (3.14) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    139476 4lt8:QS (3.14) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    139477 4lt8:QT (3.14) BS01 rna ? GO:0003723 ... P80380 25128388
    139478 4lt8:R0 (3.14) BS01 rna ? GO:0003735 ... P60493 25128388
    139479 4lt8:R0 (3.14) BS02 rna ? GO:0003735 ... P60493 25128388
    139480 4lt8:R0 (3.14) BS03 rna ? GO:0003735 ... P60493 25128388
    139481 4lt8:R1 (3.14) BS01 rna ? GO:0003735 ... P60494 25128388
    139482 4lt8:R2 (3.14) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    139483 4lt8:R3 (3.14) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    139484 4lt8:R3 (3.14) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    139485 4lt8:R4 (3.14) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    139486 4lt8:R4 (3.14) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    139487 4lt8:R5 (3.14) BS01 rna ? GO:0003735 ... P80339 25128388
    139488 4lt8:R6 (3.14) BS01 rna ? GO:0000049 ... P35871 25128388
    139489 4lt8:R7 (3.14) BS01 rna ? GO:0003735 ... P80340 25128388
    139490 4lt8:R8 (3.14) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    139491 4lt8:R9 (3.14) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    139492 4lt8:RD (3.14) BS01 rna ? GO:0002181 ... P60405 25128388
    139493 4lt8:RD (3.14) BS02 rna ? GO:0002181 ... P60405 25128388
    139494 4lt8:RD (3.14) BS03 MG ? GO:0002181 ... P60405 25128388
    139495 4lt8:RD (3.14) BS04 MG ? GO:0002181 ... P60405 25128388
    139496 4lt8:RE (3.14) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    139497 4lt8:RF (3.14) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    139498 4lt8:RG (3.14) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    139499 4lt8:RG (3.14) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    139500 4lt8:RH (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139501 4lt8:RI (3.14) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    139502 4lt8:RN (3.14) BS01 rna ? GO:0003729 ... P60488 25128388
    139503 4lt8:RO (3.14) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    139504 4lt8:RO (3.14) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    139505 4lt8:RP (3.14) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    139506 4lt8:RQ (3.14) BS01 rna ? GO:0000049 ... P60489 25128388
    139507 4lt8:RQ (3.14) BS02 rna ? GO:0000049 ... P60489 25128388
    139508 4lt8:RR (3.14) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    139509 4lt8:RS (3.14) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    139510 4lt8:RS (3.14) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    139511 4lt8:RT (3.14) BS01 rna ? GO:0003735 ... P60490 25128388
    139512 4lt8:RT (3.14) BS02 rna ? GO:0003735 ... P60490 25128388
    139513 4lt8:RU (3.14) BS01 rna ? GO:0000027 ... P60491 25128388
    139514 4lt8:RV (3.14) BS01 rna ? GO:0003723 ... P60492 25128388
    139515 4lt8:RW (3.14) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    139516 4lt8:RX (3.14) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    139517 4lt8:RY (3.14) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    139518 4lt8:RZ (3.14) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    139519 4lt8:RZ (3.14) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    139520 4lt8:XB (3.14) BS01 rna ? GO:0003735 ... P80371 25128388
    139521 4lt8:XC (3.14) BS01 rna ? GO:0003676 ... P80372 25128388
    139522 4lt8:XD (3.14) BS01 rna ? GO:0003723 ... P80373 25128388
    139523 4lt8:XD (3.14) BS02 ZN ? GO:0003723 ... P80373 25128388
    139524 4lt8:XE (3.14) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    139525 4lt8:XF (3.14) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    139526 4lt8:XG (3.14) BS01 rna ? GO:0000028 ... P17291 25128388
    139527 4lt8:XH (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139528 4lt8:XI (3.14) BS01 rna ? GO:0000049 ... P80374 25128388
    139529 4lt8:XI (3.14) BS02 rna ? GO:0000049 ... P80374 25128388
    139530 4lt8:XJ (3.14) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    139531 4lt8:XK (3.14) BS01 rna ? GO:0003735 ... P80376 25128388
    139532 4lt8:XL (3.14) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    139533 4lt8:XM (3.14) BS01 rna ? GO:0000049 ... P80377 25128388
    139534 4lt8:XM (3.14) BS02 rna ? GO:0000049 ... P80377 25128388
    139535 4lt8:XM (3.14) BS03 MG ? GO:0000049 ... P80377 25128388
    139536 4lt8:XN (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139537 4lt8:XN (3.14) BS02 ZN N/A GO:0003735 ... N/A 25128388
    139538 4lt8:XO (3.14) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    139539 4lt8:XO (3.14) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    139540 4lt8:XP (3.14) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    139541 4lt8:XQ (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139542 4lt8:XR (3.14) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    139543 4lt8:XS (3.14) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    139544 4lt8:XT (3.14) BS01 rna ? GO:0003723 ... P80380 25128388
    139545 4lt8:Y0 (3.14) BS01 rna ? GO:0003735 ... P60493 25128388
    139546 4lt8:Y0 (3.14) BS02 rna ? GO:0003735 ... P60493 25128388
    139547 4lt8:Y0 (3.14) BS03 rna ? GO:0003735 ... P60493 25128388
    139548 4lt8:Y1 (3.14) BS01 rna ? GO:0003735 ... P60494 25128388
    139549 4lt8:Y2 (3.14) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    139550 4lt8:Y3 (3.14) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    139551 4lt8:Y3 (3.14) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    139552 4lt8:Y4 (3.14) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    139553 4lt8:Y5 (3.14) BS01 rna ? GO:0003735 ... P80339 25128388
    139554 4lt8:Y6 (3.14) BS01 rna ? GO:0000049 ... P35871 25128388
    139555 4lt8:Y7 (3.14) BS01 rna ? GO:0003735 ... P80340 25128388
    139556 4lt8:Y8 (3.14) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    139557 4lt8:Y9 (3.14) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    139558 4lt8:YD (3.14) BS01 rna ? GO:0002181 ... P60405 25128388
    139559 4lt8:YD (3.14) BS02 MG ? GO:0002181 ... P60405 25128388
    139560 4lt8:YE (3.14) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    139561 4lt8:YF (3.14) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    139562 4lt8:YG (3.14) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    139563 4lt8:YG (3.14) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    139564 4lt8:YH (3.14) BS01 rna N/A GO:0003735 ... N/A 25128388
    139565 4lt8:YI (3.14) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    139566 4lt8:YI (3.14) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    139567 4lt8:YN (3.14) BS01 rna ? GO:0003729 ... P60488 25128388
    139568 4lt8:YO (3.14) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    139569 4lt8:YO (3.14) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    139570 4lt8:YP (3.14) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    139571 4lt8:YQ (3.14) BS01 rna ? GO:0000049 ... P60489 25128388
    139572 4lt8:YQ (3.14) BS02 rna ? GO:0000049 ... P60489 25128388
    139573 4lt8:YR (3.14) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    139574 4lt8:YS (3.14) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    139575 4lt8:YS (3.14) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    139576 4lt8:YT (3.14) BS01 rna ? GO:0003735 ... P60490 25128388
    139577 4lt8:YT (3.14) BS02 rna ? GO:0003735 ... P60490 25128388
    139578 4lt8:YU (3.14) BS01 rna ? GO:0000027 ... P60491 25128388
    139579 4lt8:YV (3.14) BS01 rna ? GO:0003723 ... P60492 25128388
    139580 4lt8:YW (3.14) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    139581 4lt8:YX (3.14) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    139582 4lt8:YY (3.14) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    139583 4lt8:YZ (3.14) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    139584 4lt8:YZ (3.14) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    139585 4lta:A (2.04) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    139586 4lta:A (2.04) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 N/A
    139587 4lta:B (2.04) BS01 MN 5.3.1.9 GO:0004347 ... P83194 N/A
    139588 4lta:B (2.04) BS02 PA5 5.3.1.9 GO:0004347 ... P83194 N/A
    139589 4ltc:K (2.5) BS01 EC6 3.4.25.1 GO:0004298 ... P30656 24930969
    139590 4ltc:Y (2.5) BS01 EC6 3.4.25.1 GO:0004298 ... P30656 24930969
    139591 4lte:A (2.705) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 24847884
    139592 4lte:A (2.705) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 24847884
    139593 4lte:B (2.705) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 24847884
    139594 4lte:B (2.705) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 24847884
    139595 4lts:A (1.692) BS01 LTS 2.4.2.12 GO:0005125 ... P43490 24279990 MOAD: ic50=4.4nM
    PDBbind: -logKd/Ki=8.36, IC50=4.4nM
    BindingDB: IC50=6.20nM
    139596 4lts:B (1.692) BS01 LTS 2.4.2.12 GO:0005125 ... P43490 24279990 MOAD: ic50=4.4nM
    PDBbind: -logKd/Ki=8.36, IC50=4.4nM
    BindingDB: IC50=6.20nM
    139597 4ltu:A (2.31) BS01 FES ? GO:0005829 ... Q2IU01 N/A
    139598 4ltu:B (2.31) BS01 FES ? GO:0005829 ... Q2IU01 N/A
    139599 4luc:A (1.29) BS01 20G 3.6.5.2 GO:0003924 ... P01116 24256730
    139600 4luc:A (1.29) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 24256730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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