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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138601 4lkd:G (2.307) BS02 CA ? GO:0005737 ... Q05097 24307364
    138602 4lkd:H (2.307) BS01 GAL ? GO:0005737 ... Q05097 24307364
    138603 4lkd:H (2.307) BS02 CA ? GO:0005737 ... Q05097 24307364
    138604 4lke:A (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    138605 4lke:A (1.653) BS02 CA ? GO:0005737 ... Q05097 24307364
    138606 4lke:B (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364
    138607 4lke:B (1.653) BS02 CA ? GO:0005737 ... Q05097 24307364
    138608 4lke:C (1.653) BS01 GAL ? GO:0005737 ... Q05097 24307364
    138609 4lke:C (1.653) BS02 CA ? GO:0005737 ... Q05097 24307364
    138610 4lke:D (1.653) BS01 peptide ? GO:0005737 ... Q05097 24307364
    138611 4lke:D (1.653) BS02 GAL ? GO:0005737 ... Q05097 24307364
    138612 4lke:D (1.653) BS03 CA ? GO:0005737 ... Q05097 24307364
    138613 4lkf:A (1.64) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    138614 4lkf:A (1.64) BS02 CA ? GO:0005737 ... Q05097 24307364
    138615 4lkf:B (1.64) BS01 GAL ? GO:0005737 ... Q05097 24307364 PDBbind: -logKd/Ki=5.37, Kd=4.3uM
    138616 4lkf:B (1.64) BS02 CA ? GO:0005737 ... Q05097 24307364
    138617 4lkg:A (2.994) BS01 GAL ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    138618 4lkg:A (2.994) BS02 SIA ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    138619 4lkg:C (2.994) BS01 SIA ? GO:0005886 ... V5IRV0 24009358
    138620 4lkg:E (2.994) BS01 SIA ? GO:0005886 ... V5IRV0 24009358
    138621 4lkh:A (3.099) BS01 SIA ? GO:0005886 ... V5IRV0 24009358 PDBbind: -logKd/Ki=3.00, Kd>1.0mM
    138622 4lkj:A (2.798) BS01 SIA ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=6.70, Kd=0.20uM
    138623 4lkk:A (2.491) BS01 GAL ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=5.92, Kd=1.20uM
    138624 4lkk:A (2.491) BS02 SIA ? GO:0005886 ... V5IRV5 24009358 PDBbind: -logKd/Ki=5.92, Kd=1.20uM
    138625 4lko:A (2.43) BS01 1WH 3.4.14.5 GO:0001618 ... P27487 23964740 MOAD: Ki=8.3nM
    PDBbind: -logKd/Ki=8.22, Ki=6.0nM
    138626 4lko:B (2.43) BS01 1WH 3.4.14.5 GO:0001618 ... P27487 23964740 MOAD: Ki=8.3nM
    138627 4lkt:A (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 PDBbind: -logKd/Ki=5.90, Ki=1.26uM
    BindingDB: Ki=1.26e+3nM
    138628 4lkt:B (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    138629 4lkt:C (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    138630 4lkt:D (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    138631 4lkv:A (3.5109) BS01 LP4 2.7.1.130 GO:0005524 ... O67572 25023290
    138632 4lkv:A (3.5109) BS02 LP5 2.7.1.130 GO:0005524 ... O67572 25023290
    138633 4lkv:C (3.5109) BS01 LP5 2.7.1.130 GO:0005524 ... O67572 25023290
    138634 4lkx:B (1.92) BS01 peptide ? GO:0005576 ... Q0KKI6 24457896
    138635 4ll5:A (2.0) BS01 SK8 2.7.11.1 GO:0004672 ... P11309 24531473
    138636 4ll5:A (2.0) BS02 CA 2.7.11.1 GO:0004672 ... P11309 24531473
    138637 4llf:A (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138638 4llf:A (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138639 4llf:B (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138640 4llf:B (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138641 4llf:D (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138642 4llf:D (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138643 4llf:E (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138644 4llf:E (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138645 4llf:F (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138646 4llf:F (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138647 4llf:G (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138648 4llf:G (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138649 4llf:H (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138650 4llf:H (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138651 4llf:I (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138652 4llf:I (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138653 4llf:J (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138654 4llf:J (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138655 4llf:K (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138656 4llf:K (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138657 4llf:L (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138658 4llf:L (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138659 4llf:M (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138660 4llf:M (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138661 4llf:N (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138662 4llf:N (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138663 4llf:O (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138664 4llf:P (2.8891) BS01 CA ? GO:0003723 ... P15183 24006433
    138665 4llf:P (2.8891) BS02 CA ? GO:0003723 ... P15183 24006433
    138666 4llh:A (2.8) BS01 1Y8 ? GO:0005886 ... P54582 25023443
    138667 4llh:A (2.8) BS02 NA ? GO:0005886 ... P54582 25023443
    138668 4llh:A (2.8) BS03 CM5 ? GO:0005886 ... P54582 25023443
    138669 4llh:B (2.8) BS01 1Y8 ? GO:0005886 ... P54582 25023443
    138670 4llh:B (2.8) BS02 NA ? GO:0005886 ... P54582 25023443
    138671 4llh:C (2.8) BS01 CM5 ? GO:0005886 ... P54582 25023443
    138672 4llh:C (2.8) BS02 1Y8 ? GO:0005886 ... P54582 25023443
    138673 4llh:C (2.8) BS03 CM5 ? GO:0005886 ... P54582 25023443
    138674 4lls:A (1.5) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138675 4lls:A (1.5) BS02 GST 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138676 4lls:A (1.5) BS03 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138677 4lls:A (1.5) BS04 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138678 4lls:B (1.5) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138679 4lls:B (1.5) BS02 GST 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138680 4lls:B (1.5) BS03 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138681 4lls:B (1.5) BS04 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138682 4llt:A (1.55) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138683 4llt:A (1.55) BS02 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138684 4llt:A (1.55) BS03 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138685 4llt:A (1.55) BS04 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138686 4llt:B (1.55) BS01 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138687 4llt:B (1.55) BS02 IPE 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138688 4llt:B (1.55) BS03 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138689 4llt:B (1.55) BS04 CA 2.5.1.10 GO:0004337 ... Q16CN9 N/A
    138690 4lly:B (1.6) BS01 MG ? GO:0002250 ... P0DOY2 24463572
    138691 4lm5:A (2.25) BS01 Q17 2.7.11.1 GO:0004672 ... P11309 24531473 PDBbind: -logKd/Ki=6.82, IC50=150nM
    138692 4lm6:A (1.7) BS01 DBV ? GO:0030089 ... C0HM11 24979784
    138693 4lm6:B (1.7) BS01 DBV ? GO:0009507 ... A0A075B5G2 24979784
    138694 4lm6:C (1.7) BS01 DBV ? GO:0030089 ... C0HM11 24979784
    138695 4lm6:D (1.7) BS01 DBV ? GO:0009507 ... A0A075B5G2 24979784
    138696 4lm7:A (1.72) BS01 U5P ? GO:0003723 ... P33469 24564608
    138697 4lm9:A (1.601) BS01 5GP ? GO:0003723 ... P33469 24564608
    138698 4lma:A (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... A8YBS4 24275508
    138699 4lma:B (2.3) BS01 PLP 2.5.1.47 GO:0004124 ... A8YBS4 24275508
    138700 4lmb:A (1.91) BS01 CYS 2.5.1.47 GO:0004124 ... A8YBP8 24275508
    138701 4lmb:A (1.91) BS02 CYS 2.5.1.47 GO:0004124 ... A8YBP8 24275508
    138702 4lmb:A (1.91) BS03 PLP 2.5.1.47 GO:0004124 ... A8YBP8 24275508
    138703 4lmc:A (1.742) BS01 C5P ? GO:0003723 ... P33469 24564608
    138704 4lms:A (1.35) BS01 M1V ? GO:0030089 ... U5T880 24979784
    138705 4lms:A (1.35) BS02 DBV ? GO:0030089 ... U5T880 24979784
    138706 4lms:A (1.35) BS03 DBV ? GO:0030089 ... U5T880 24979784
    138707 4lms:B (1.35) BS01 DBV ? GO:0009507 ... U5T8F2 24979784
    138708 4lms:B (1.35) BS02 M1V ? GO:0009507 ... U5T8F2 24979784
    138709 4lms:B (1.35) BS03 DBV ? GO:0009507 ... U5T8F2 24979784
    138710 4lms:C (1.35) BS01 M1V ? GO:0030089 ... U5T8W5 24979784
    138711 4lms:C (1.35) BS02 M1V ? GO:0030089 ... U5T8W5 24979784
    138712 4lms:C (1.35) BS03 DBV ? GO:0030089 ... U5T8W5 24979784
    138713 4lms:D (1.35) BS01 DBV ? GO:0009507 ... U5T8F2 24979784
    138714 4lmt:A (1.71) BS01 CQD ? GO:0003723 ... P33469 N/A
    138715 4lmu:A (2.38) BS01 QUE 2.7.11.1 GO:0004672 ... P11309 24531473 PDBbind: -logKd/Ki=7.26, IC50=55nM
    BindingDB: IC50=1100nM, Kd=25nM
    138716 4lmx:A (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    138717 4lmx:A (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    138718 4lmx:A (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    138719 4lmx:A (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    138720 4lmx:A (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    138721 4lmx:B (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    138722 4lmx:B (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    138723 4lmx:B (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138724 4lmx:C (1.8) BS01 PEB ? GO:0030089 ... U5TBU5 24979784
    138725 4lmx:C (1.8) BS02 PEB ? GO:0030089 ... U5TBU5 24979784
    138726 4lmx:C (1.8) BS03 DBV ? GO:0030089 ... U5TBU5 24979784
    138727 4lmx:C (1.8) BS04 PEB ? GO:0030089 ... U5TBU5 24979784
    138728 4lmx:C (1.8) BS05 PEB ? GO:0030089 ... U5TBU5 24979784
    138729 4lmx:D (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    138730 4lmx:D (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    138731 4lmx:D (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138732 4lmx:E (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    138733 4lmx:E (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    138734 4lmx:E (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    138735 4lmx:E (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    138736 4lmx:E (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    138737 4lmx:F (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    138738 4lmx:F (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    138739 4lmx:F (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138740 4lmx:G (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    138741 4lmx:G (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    138742 4lmx:G (1.8) BS03 DBV ? GO:0030089 ... U5TBJ3 24979784
    138743 4lmx:G (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    138744 4lmx:G (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    138745 4lmx:H (1.8) BS01 PEB ? GO:0009507 ... U5T8W0 24979784
    138746 4lmx:H (1.8) BS02 DBV ? GO:0009507 ... U5T8W0 24979784
    138747 4lmx:H (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138748 4lmx:H (1.8) BS04 PEB ? GO:0009507 ... U5T8W0 24979784
    138749 4lmx:I (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    138750 4lmx:I (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    138751 4lmx:I (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    138752 4lmx:I (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    138753 4lmx:I (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    138754 4lmx:J (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    138755 4lmx:J (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    138756 4lmx:J (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138757 4lmx:K (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    138758 4lmx:K (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    138759 4lmx:K (1.8) BS03 DBV ? GO:0030089 ... U5TBJ3 24979784
    138760 4lmx:K (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    138761 4lmx:K (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    138762 4lmx:L (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    138763 4lmx:L (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    138764 4lmx:L (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    138765 4lmz:A (2.78) BS01 rna ? GO:0003676 ... O95319 N/A
    138766 4ln1:A (1.9) BS01 CA 1.1.1.27 GO:0003824 ... Q81EP4 N/A
    138767 4ln1:B (1.9) BS01 CA 1.1.1.27 GO:0003824 ... Q81EP4 N/A
    138768 4ln1:C (1.9) BS01 CA 1.1.1.27 GO:0003824 ... Q81EP4 N/A
    138769 4ln1:D (1.9) BS01 CA 1.1.1.27 GO:0003824 ... Q81EP4 N/A
    138770 4ln6:A (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138771 4ln6:C (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138772 4ln6:E (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138773 4ln6:G (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138774 4ln6:I (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138775 4ln6:K (2.12) BS01 CA ? GO:0019031 ... R4NN21 24027325
    138776 4ln8:A (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138777 4ln8:A (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138778 4ln8:C (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138779 4ln8:C (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138780 4ln8:E (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138781 4ln8:E (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138782 4ln8:G (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138783 4ln8:G (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138784 4ln8:I (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138785 4ln8:I (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138786 4ln8:K (2.5) BS01 SIA ? GO:0019031 ... R4NN21 24027325
    138787 4ln8:K (2.5) BS02 CA ? GO:0019031 ... R4NN21 24027325
    138788 4lna:A (2.1) BS01 ADE 2.4.2.1 GO:0003824 ... D2QIK7 N/A
    138789 4lnb:B (1.752) BS01 FPP 2.5.1.58 GO:0003824 ... Q4WPS9 24347326
    138790 4lnb:B (1.752) BS02 ZN 2.5.1.58 GO:0003824 ... Q4WPS9 24347326
    138791 4lnb:B (1.752) BS03 ED5 2.5.1.58 GO:0003824 ... Q4WPS9 24347326 PDBbind: -logKd/Ki=6.56, IC50=275nM
    138792 4lnc:A (1.84) BS01 GLC 5.3.1.5 GO:0000287 ... P24300 24531475
    138793 4lnc:A (1.84) BS02 MN 5.3.1.5 GO:0000287 ... P24300 24531475
    138794 4lnc:A (1.84) BS03 MN 5.3.1.5 GO:0000287 ... P24300 24531475
    138795 4lnc:A (1.84) BS04 MG 5.3.1.5 GO:0000287 ... P24300 24531475
    138796 4lnf:A (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    138797 4lnf:A (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    138798 4lnf:A (2.949) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 24158439 PDBbind: -logKd/Ki=2.62, IC50=2.4mM
    138799 4lnf:B (2.949) BS01 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    138800 4lnf:B (2.949) BS02 MG 6.3.1.2 GO:0000287 ... P12425 24158439
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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