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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138201 4lfa:F (3.6461) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138202 4lfa:G (3.6461) BS01 rna ? GO:0000028 ... P17291 N/A
    138203 4lfa:H (3.6461) BS01 rna N/A GO:0003735 ... N/A N/A
    138204 4lfa:I (3.6461) BS01 rna ? GO:0000049 ... P80374 N/A
    138205 4lfa:J (3.6461) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138206 4lfa:K (3.6461) BS01 rna ? GO:0003735 ... P80376 N/A
    138207 4lfa:K (3.6461) BS02 MG ? GO:0003735 ... P80376 N/A
    138208 4lfa:L (3.6461) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138209 4lfa:M (3.6461) BS01 rna ? GO:0000049 ... P80377 N/A
    138210 4lfa:M (3.6461) BS02 MG ? GO:0000049 ... P80377 N/A
    138211 4lfa:N (3.6461) BS01 rna N/A GO:0003735 ... N/A N/A
    138212 4lfa:N (3.6461) BS02 ZN N/A GO:0003735 ... N/A N/A
    138213 4lfa:O (3.6461) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138214 4lfa:P (3.6461) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138215 4lfa:Q (3.6461) BS01 rna N/A GO:0003735 ... N/A N/A
    138216 4lfa:R (3.6461) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138217 4lfa:S (3.6461) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138218 4lfa:T (3.6461) BS01 rna ? GO:0003723 ... P80380 N/A
    138219 4lfb:B (3.009) BS01 rna ? GO:0003735 ... P80371 N/A
    138220 4lfb:C (3.009) BS01 rna ? GO:0003676 ... P80372 N/A
    138221 4lfb:D (3.009) BS01 rna ? GO:0003723 ... P80373 N/A
    138222 4lfb:D (3.009) BS02 MG ? GO:0003723 ... P80373 N/A
    138223 4lfb:E (3.009) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138224 4lfb:F (3.009) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138225 4lfb:G (3.009) BS01 rna ? GO:0000028 ... P17291 N/A
    138226 4lfb:H (3.009) BS01 rna N/A GO:0003735 ... N/A N/A
    138227 4lfb:I (3.009) BS01 rna ? GO:0000049 ... P80374 N/A
    138228 4lfb:J (3.009) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138229 4lfb:K (3.009) BS01 rna ? GO:0003735 ... P80376 N/A
    138230 4lfb:L (3.009) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138231 4lfb:L (3.009) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138232 4lfb:L (3.009) BS03 MG ? GO:0000049 ... F6DEQ7 N/A
    138233 4lfb:M (3.009) BS01 rna ? GO:0000049 ... P80377 N/A
    138234 4lfb:M (3.009) BS02 MG ? GO:0000049 ... P80377 N/A
    138235 4lfb:N (3.009) BS01 rna N/A GO:0003735 ... N/A N/A
    138236 4lfb:N (3.009) BS02 ZN N/A GO:0003735 ... N/A N/A
    138237 4lfb:O (3.009) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138238 4lfb:P (3.009) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138239 4lfb:Q (3.009) BS01 rna N/A GO:0003735 ... N/A N/A
    138240 4lfb:Q (3.009) BS02 MG N/A GO:0003735 ... N/A N/A
    138241 4lfb:R (3.009) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138242 4lfb:S (3.009) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138243 4lfb:T (3.009) BS01 rna ? GO:0003723 ... P80380 N/A
    138244 4lfc:B (3.602) BS01 rna ? GO:0003735 ... P80371 N/A
    138245 4lfc:B (3.602) BS02 MG ? GO:0003735 ... P80371 N/A
    138246 4lfc:C (3.602) BS01 rna ? GO:0003676 ... P80372 N/A
    138247 4lfc:D (3.602) BS01 rna ? GO:0003723 ... P80373 N/A
    138248 4lfc:D (3.602) BS02 MG ? GO:0003723 ... P80373 N/A
    138249 4lfc:E (3.602) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138250 4lfc:F (3.602) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138251 4lfc:G (3.602) BS01 rna ? GO:0000028 ... P17291 N/A
    138252 4lfc:H (3.602) BS01 rna N/A GO:0003735 ... N/A N/A
    138253 4lfc:I (3.602) BS01 rna ? GO:0000049 ... P80374 N/A
    138254 4lfc:J (3.602) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138255 4lfc:K (3.602) BS01 rna ? GO:0003735 ... P80376 N/A
    138256 4lfc:K (3.602) BS02 MG ? GO:0003735 ... P80376 N/A
    138257 4lfc:K (3.602) BS03 MG ? GO:0003735 ... P80376 N/A
    138258 4lfc:L (3.602) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138259 4lfc:M (3.602) BS01 rna ? GO:0000049 ... P80377 N/A
    138260 4lfc:M (3.602) BS02 MG ? GO:0000049 ... P80377 N/A
    138261 4lfc:N (3.602) BS01 rna N/A GO:0003735 ... N/A N/A
    138262 4lfc:N (3.602) BS02 ZN N/A GO:0003735 ... N/A N/A
    138263 4lfc:O (3.602) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138264 4lfc:P (3.602) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138265 4lfc:Q (3.602) BS01 rna N/A GO:0003735 ... N/A N/A
    138266 4lfc:Q (3.602) BS02 MG N/A GO:0003735 ... N/A N/A
    138267 4lfc:R (3.602) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138268 4lfc:S (3.602) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138269 4lfc:T (3.602) BS01 rna ? GO:0003723 ... P80380 N/A
    138270 4lfe:A (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138271 4lfe:A (1.95) BS02 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138272 4lfe:A (1.95) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138273 4lfe:B (1.95) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138274 4lfe:B (1.95) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138275 4lfe:B (1.95) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138276 4lfe:B (1.95) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138277 4lfg:A (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138278 4lfg:A (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138279 4lfg:A (1.76) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138280 4lfg:A (1.76) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138281 4lfg:A (1.76) BS05 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138282 4lfg:B (1.76) BS01 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138283 4lfg:B (1.76) BS02 IPE 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138284 4lfg:B (1.76) BS03 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138285 4lfg:B (1.76) BS04 MG 2.5.1.10 GO:0004337 ... B9DUT7 N/A
    138286 4lfi:A (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    138287 4lfi:A (1.85) BS02 MN 2.7.11.1 GO:0000028 ... P15790 24531484
    138288 4lfi:A (1.85) BS03 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138289 4lfi:A (1.85) BS04 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138290 4lfi:A (1.85) BS05 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138291 4lfi:A (1.85) BS06 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138292 4lfi:B (1.85) BS01 GNP 2.7.11.1 GO:0000028 ... P15790 24531484
    138293 4lfi:B (1.85) BS02 MN 2.7.11.1 GO:0000028 ... P15790 24531484
    138294 4lfi:B (1.85) BS03 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138295 4lfi:B (1.85) BS04 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138296 4lfi:B (1.85) BS05 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138297 4lfi:B (1.85) BS06 SO4 2.7.11.1 GO:0000028 ... P15790 24531484
    138298 4lfy:A (1.8) BS01 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138299 4lfy:A (1.8) BS02 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138300 4lfy:A (1.8) BS03 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138301 4lfy:A (1.8) BS04 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138302 4lfy:B (1.8) BS01 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138303 4lfy:B (1.8) BS02 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138304 4lfy:B (1.8) BS03 ZN 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138305 4lfy:B (1.8) BS04 CA 3.5.2.3 GO:0004151 ... B4EEU0 N/A
    138306 4lfz:QB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    138307 4lfz:QC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    138308 4lfz:QD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    138309 4lfz:QD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    138310 4lfz:QE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    138311 4lfz:QF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    138312 4lfz:QG (3.92) BS01 rna ? GO:0000028 ... P17291 25128388
    138313 4lfz:QH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138314 4lfz:QH (3.92) BS02 MG N/A GO:0003735 ... N/A 25128388
    138315 4lfz:QI (3.92) BS01 rna ? GO:0000049 ... P80374 25128388
    138316 4lfz:QI (3.92) BS02 rna ? GO:0000049 ... P80374 25128388
    138317 4lfz:QJ (3.92) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    138318 4lfz:QK (3.92) BS01 rna ? GO:0003735 ... P80376 25128388
    138319 4lfz:QL (3.92) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    138320 4lfz:QM (3.92) BS01 rna ? GO:0000049 ... P80377 25128388
    138321 4lfz:QM (3.92) BS02 rna ? GO:0000049 ... P80377 25128388
    138322 4lfz:QM (3.92) BS03 MG ? GO:0000049 ... P80377 25128388
    138323 4lfz:QN (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138324 4lfz:QN (3.92) BS02 ZN N/A GO:0003735 ... N/A 25128388
    138325 4lfz:QO (3.92) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    138326 4lfz:QO (3.92) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    138327 4lfz:QP (3.92) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    138328 4lfz:QQ (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138329 4lfz:QR (3.92) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    138330 4lfz:QS (3.92) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    138331 4lfz:QT (3.92) BS01 rna ? GO:0003723 ... P80380 25128388
    138332 4lfz:R0 (3.92) BS01 rna ? GO:0003735 ... P60493 25128388
    138333 4lfz:R0 (3.92) BS02 rna ? GO:0003735 ... P60493 25128388
    138334 4lfz:R1 (3.92) BS01 rna ? GO:0003735 ... P60494 25128388
    138335 4lfz:R2 (3.92) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    138336 4lfz:R3 (3.92) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    138337 4lfz:R4 (3.92) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    138338 4lfz:R5 (3.92) BS01 rna ? GO:0003735 ... P80339 25128388
    138339 4lfz:R6 (3.92) BS01 rna ? GO:0000049 ... P35871 25128388
    138340 4lfz:R7 (3.92) BS01 rna ? GO:0003735 ... P80340 25128388
    138341 4lfz:R8 (3.92) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    138342 4lfz:R9 (3.92) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    138343 4lfz:RD (3.92) BS01 rna ? GO:0002181 ... P60405 25128388
    138344 4lfz:RD (3.92) BS02 rna ? GO:0002181 ... P60405 25128388
    138345 4lfz:RD (3.92) BS03 MG ? GO:0002181 ... P60405 25128388
    138346 4lfz:RD (3.92) BS04 MG ? GO:0002181 ... P60405 25128388
    138347 4lfz:RE (3.92) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    138348 4lfz:RF (3.92) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    138349 4lfz:RF (3.92) BS02 MG ? GO:0003735 ... Q5SHN9 25128388
    138350 4lfz:RG (3.92) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    138351 4lfz:RG (3.92) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    138352 4lfz:RH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138353 4lfz:RI (3.92) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    138354 4lfz:RN (3.92) BS01 rna ? GO:0003729 ... P60488 25128388
    138355 4lfz:RO (3.92) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    138356 4lfz:RO (3.92) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    138357 4lfz:RP (3.92) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    138358 4lfz:RQ (3.92) BS01 rna ? GO:0000049 ... P60489 25128388
    138359 4lfz:RR (3.92) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    138360 4lfz:RS (3.92) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    138361 4lfz:RS (3.92) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    138362 4lfz:RT (3.92) BS01 rna ? GO:0003735 ... P60490 25128388
    138363 4lfz:RT (3.92) BS02 rna ? GO:0003735 ... P60490 25128388
    138364 4lfz:RU (3.92) BS01 rna ? GO:0000027 ... P60491 25128388
    138365 4lfz:RV (3.92) BS01 rna ? GO:0003723 ... P60492 25128388
    138366 4lfz:RW (3.92) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    138367 4lfz:RX (3.92) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    138368 4lfz:RY (3.92) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    138369 4lfz:RZ (3.92) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    138370 4lfz:RZ (3.92) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    138371 4lfz:XB (3.92) BS01 rna ? GO:0003735 ... P80371 25128388
    138372 4lfz:XC (3.92) BS01 rna ? GO:0003676 ... P80372 25128388
    138373 4lfz:XD (3.92) BS01 rna ? GO:0003723 ... P80373 25128388
    138374 4lfz:XD (3.92) BS02 ZN ? GO:0003723 ... P80373 25128388
    138375 4lfz:XE (3.92) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    138376 4lfz:XF (3.92) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    138377 4lfz:XG (3.92) BS01 rna ? GO:0000028 ... P17291 25128388
    138378 4lfz:XH (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138379 4lfz:XI (3.92) BS01 rna ? GO:0000049 ... P80374 25128388
    138380 4lfz:XI (3.92) BS02 rna ? GO:0000049 ... P80374 25128388
    138381 4lfz:XJ (3.92) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    138382 4lfz:XK (3.92) BS01 rna ? GO:0003735 ... P80376 25128388
    138383 4lfz:XL (3.92) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    138384 4lfz:XL (3.92) BS02 MG ? GO:0000049 ... Q5SHN3 25128388
    138385 4lfz:XM (3.92) BS01 rna ? GO:0000049 ... P80377 25128388
    138386 4lfz:XM (3.92) BS02 rna ? GO:0000049 ... P80377 25128388
    138387 4lfz:XM (3.92) BS03 MG ? GO:0000049 ... P80377 25128388
    138388 4lfz:XM (3.92) BS04 MG ? GO:0000049 ... P80377 25128388
    138389 4lfz:XN (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138390 4lfz:XN (3.92) BS02 ZN N/A GO:0003735 ... N/A 25128388
    138391 4lfz:XO (3.92) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    138392 4lfz:XO (3.92) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    138393 4lfz:XP (3.92) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    138394 4lfz:XQ (3.92) BS01 rna N/A GO:0003735 ... N/A 25128388
    138395 4lfz:XR (3.92) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    138396 4lfz:XS (3.92) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    138397 4lfz:XT (3.92) BS01 rna ? GO:0003723 ... P80380 25128388
    138398 4lfz:Y0 (3.92) BS01 rna ? GO:0003735 ... P60493 25128388
    138399 4lfz:Y0 (3.92) BS02 rna ? GO:0003735 ... P60493 25128388
    138400 4lfz:Y0 (3.92) BS03 rna ? GO:0003735 ... P60493 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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