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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138001 4lel:Y1 (3.9) BS01 rna ? GO:0003735 ... P60494 25128388
    138002 4lel:Y2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    138003 4lel:Y3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    138004 4lel:Y3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    138005 4lel:Y4 (3.9) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    138006 4lel:Y4 (3.9) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    138007 4lel:Y5 (3.9) BS01 rna ? GO:0003735 ... P80339 25128388
    138008 4lel:Y6 (3.9) BS01 rna ? GO:0000049 ... P35871 25128388
    138009 4lel:Y7 (3.9) BS01 rna ? GO:0003735 ... P80340 25128388
    138010 4lel:Y8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    138011 4lel:Y9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    138012 4lel:YD (3.9) BS01 rna ? GO:0002181 ... P60405 25128388
    138013 4lel:YE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    138014 4lel:YF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    138015 4lel:YG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    138016 4lel:YG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    138017 4lel:YH (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    138018 4lel:YI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    138019 4lel:YI (3.9) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    138020 4lel:YN (3.9) BS01 rna ? GO:0003729 ... P60488 25128388
    138021 4lel:YO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    138022 4lel:YO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    138023 4lel:YP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    138024 4lel:YQ (3.9) BS01 rna ? GO:0000049 ... P60489 25128388
    138025 4lel:YQ (3.9) BS02 rna ? GO:0000049 ... P60489 25128388
    138026 4lel:YR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    138027 4lel:YS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    138028 4lel:YS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    138029 4lel:YT (3.9) BS01 rna ? GO:0003735 ... P60490 25128388
    138030 4lel:YT (3.9) BS02 rna ? GO:0003735 ... P60490 25128388
    138031 4lel:YU (3.9) BS01 rna ? GO:0000027 ... P60491 25128388
    138032 4lel:YV (3.9) BS01 rna ? GO:0003723 ... P60492 25128388
    138033 4lel:YW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    138034 4lel:YX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    138035 4lel:YY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    138036 4lel:YZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    138037 4lel:YZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    138038 4lem:A (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    138039 4lem:B (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    138040 4lem:C (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    138041 4lem:C (2.27) BS02 MG 1.2.1.88 GO:0000166 ... O50443 25557497
    138042 4lem:D (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    138043 4lem:D (2.27) BS02 MG 1.2.1.88 GO:0000166 ... O50443 25557497
    138044 4lem:F (2.27) BS01 MG 1.2.1.88 GO:0000166 ... O50443 25557497
    138045 4lep:A (3.2) BS01 AFS ? GO:0005886 ... Q8EHE6 23867627
    138046 4lep:B (3.2) BS01 AFS ? GO:0005886 ... Q8EHE6 23867627
    138047 4leq:A (1.405) BS01 1WK 2.4.2.29 GO:0002099 ... P28720 25483606 MOAD: Kd=288nM
    PDBbind: -logKd/Ki=6.54, Kd=288nM
    138048 4leq:A (1.405) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 25483606
    138049 4lf4:B (3.3421) BS01 rna ? GO:0003735 ... P80371 N/A
    138050 4lf4:B (3.3421) BS02 MG ? GO:0003735 ... P80371 N/A
    138051 4lf4:C (3.3421) BS01 rna ? GO:0003676 ... P80372 N/A
    138052 4lf4:D (3.3421) BS01 rna ? GO:0003723 ... P80373 N/A
    138053 4lf4:D (3.3421) BS02 MG ? GO:0003723 ... P80373 N/A
    138054 4lf4:E (3.3421) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138055 4lf4:F (3.3421) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138056 4lf4:G (3.3421) BS01 rna ? GO:0000028 ... P17291 N/A
    138057 4lf4:H (3.3421) BS01 rna N/A GO:0003735 ... N/A N/A
    138058 4lf4:I (3.3421) BS01 rna ? GO:0000049 ... P80374 N/A
    138059 4lf4:J (3.3421) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138060 4lf4:K (3.3421) BS01 rna ? GO:0003735 ... P80376 N/A
    138061 4lf4:K (3.3421) BS02 MG ? GO:0003735 ... P80376 N/A
    138062 4lf4:L (3.3421) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138063 4lf4:L (3.3421) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138064 4lf4:M (3.3421) BS01 rna ? GO:0000049 ... P80377 N/A
    138065 4lf4:M (3.3421) BS02 MG ? GO:0000049 ... P80377 N/A
    138066 4lf4:N (3.3421) BS01 rna N/A GO:0003735 ... N/A N/A
    138067 4lf4:N (3.3421) BS02 ZN N/A GO:0003735 ... N/A N/A
    138068 4lf4:O (3.3421) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138069 4lf4:P (3.3421) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138070 4lf4:Q (3.3421) BS01 rna N/A GO:0003735 ... N/A N/A
    138071 4lf4:R (3.3421) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138072 4lf4:S (3.3421) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138073 4lf4:T (3.3421) BS01 rna ? GO:0003723 ... P80380 N/A
    138074 4lf5:B (3.753) BS01 rna ? GO:0003735 ... P80371 N/A
    138075 4lf5:B (3.753) BS02 MG ? GO:0003735 ... P80371 N/A
    138076 4lf5:C (3.753) BS01 rna ? GO:0003676 ... P80372 N/A
    138077 4lf5:D (3.753) BS01 rna ? GO:0003723 ... P80373 N/A
    138078 4lf5:D (3.753) BS02 MG ? GO:0003723 ... P80373 N/A
    138079 4lf5:E (3.753) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138080 4lf5:F (3.753) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138081 4lf5:G (3.753) BS01 rna ? GO:0000028 ... P17291 N/A
    138082 4lf5:H (3.753) BS01 rna N/A GO:0003735 ... N/A N/A
    138083 4lf5:I (3.753) BS01 rna ? GO:0000049 ... P80374 N/A
    138084 4lf5:J (3.753) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138085 4lf5:K (3.753) BS01 rna ? GO:0003735 ... P80376 N/A
    138086 4lf5:L (3.753) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138087 4lf5:L (3.753) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138088 4lf5:M (3.753) BS01 rna ? GO:0000049 ... P80377 N/A
    138089 4lf5:M (3.753) BS02 MG ? GO:0000049 ... P80377 N/A
    138090 4lf5:N (3.753) BS01 rna N/A GO:0003735 ... N/A N/A
    138091 4lf5:N (3.753) BS02 ZN N/A GO:0003735 ... N/A N/A
    138092 4lf5:O (3.753) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138093 4lf5:P (3.753) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138094 4lf5:Q (3.753) BS01 rna N/A GO:0003735 ... N/A N/A
    138095 4lf5:R (3.753) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138096 4lf5:S (3.753) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138097 4lf5:T (3.753) BS01 rna ? GO:0003723 ... P80380 N/A
    138098 4lf6:B (3.3052) BS01 rna ? GO:0003735 ... P80371 N/A
    138099 4lf6:C (3.3052) BS01 rna ? GO:0003676 ... P80372 N/A
    138100 4lf6:D (3.3052) BS01 rna ? GO:0003723 ... P80373 N/A
    138101 4lf6:E (3.3052) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138102 4lf6:F (3.3052) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138103 4lf6:G (3.3052) BS01 rna ? GO:0000028 ... P17291 N/A
    138104 4lf6:H (3.3052) BS01 rna N/A GO:0003735 ... N/A N/A
    138105 4lf6:I (3.3052) BS01 rna ? GO:0000049 ... P80374 N/A
    138106 4lf6:J (3.3052) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138107 4lf6:K (3.3052) BS01 rna ? GO:0003735 ... P80376 N/A
    138108 4lf6:K (3.3052) BS02 MG ? GO:0003735 ... P80376 N/A
    138109 4lf6:L (3.3052) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138110 4lf6:M (3.3052) BS01 rna ? GO:0000049 ... P80377 N/A
    138111 4lf6:M (3.3052) BS02 MG ? GO:0000049 ... P80377 N/A
    138112 4lf6:N (3.3052) BS01 rna N/A GO:0003735 ... N/A N/A
    138113 4lf6:N (3.3052) BS02 ZN N/A GO:0003735 ... N/A N/A
    138114 4lf6:O (3.3052) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138115 4lf6:P (3.3052) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138116 4lf6:Q (3.3052) BS01 rna N/A GO:0003735 ... N/A N/A
    138117 4lf6:Q (3.3052) BS02 MG N/A GO:0003735 ... N/A N/A
    138118 4lf6:R (3.3052) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138119 4lf6:S (3.3052) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138120 4lf6:T (3.3052) BS01 rna ? GO:0003723 ... P80380 N/A
    138121 4lf7:B (3.1484) BS01 rna ? GO:0003735 ... P80371 N/A
    138122 4lf7:C (3.1484) BS01 rna ? GO:0003676 ... P80372 N/A
    138123 4lf7:D (3.1484) BS01 rna ? GO:0003723 ... P80373 N/A
    138124 4lf7:D (3.1484) BS02 MG ? GO:0003723 ... P80373 N/A
    138125 4lf7:E (3.1484) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138126 4lf7:F (3.1484) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138127 4lf7:G (3.1484) BS01 rna ? GO:0000028 ... P17291 N/A
    138128 4lf7:H (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138129 4lf7:I (3.1484) BS01 rna ? GO:0000049 ... P80374 N/A
    138130 4lf7:J (3.1484) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138131 4lf7:K (3.1484) BS01 rna ? GO:0003735 ... P80376 N/A
    138132 4lf7:L (3.1484) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138133 4lf7:L (3.1484) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138134 4lf7:M (3.1484) BS01 rna ? GO:0000049 ... P80377 N/A
    138135 4lf7:M (3.1484) BS02 MG ? GO:0000049 ... P80377 N/A
    138136 4lf7:N (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138137 4lf7:N (3.1484) BS02 ZN N/A GO:0003735 ... N/A N/A
    138138 4lf7:N (3.1484) BS03 MG N/A GO:0003735 ... N/A N/A
    138139 4lf7:O (3.1484) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138140 4lf7:P (3.1484) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138141 4lf7:Q (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138142 4lf7:R (3.1484) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138143 4lf7:S (3.1484) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138144 4lf7:T (3.1484) BS01 rna ? GO:0003723 ... P80380 N/A
    138145 4lf7:T (3.1484) BS02 MG ? GO:0003723 ... P80380 N/A
    138146 4lf8:B (3.1484) BS01 rna ? GO:0003735 ... P80371 N/A
    138147 4lf8:C (3.1484) BS01 rna ? GO:0003676 ... P80372 N/A
    138148 4lf8:D (3.1484) BS01 rna ? GO:0003723 ... P80373 N/A
    138149 4lf8:D (3.1484) BS02 MG ? GO:0003723 ... P80373 N/A
    138150 4lf8:E (3.1484) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138151 4lf8:F (3.1484) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138152 4lf8:G (3.1484) BS01 rna ? GO:0000028 ... P17291 N/A
    138153 4lf8:H (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138154 4lf8:I (3.1484) BS01 rna ? GO:0000049 ... P80374 N/A
    138155 4lf8:J (3.1484) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138156 4lf8:K (3.1484) BS01 rna ? GO:0003735 ... P80376 N/A
    138157 4lf8:L (3.1484) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138158 4lf8:L (3.1484) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138159 4lf8:M (3.1484) BS01 rna ? GO:0000049 ... P80377 N/A
    138160 4lf8:M (3.1484) BS02 MG ? GO:0000049 ... P80377 N/A
    138161 4lf8:N (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138162 4lf8:N (3.1484) BS02 ZN N/A GO:0003735 ... N/A N/A
    138163 4lf8:N (3.1484) BS03 MG N/A GO:0003735 ... N/A N/A
    138164 4lf8:O (3.1484) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138165 4lf8:P (3.1484) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138166 4lf8:Q (3.1484) BS01 rna N/A GO:0003735 ... N/A N/A
    138167 4lf8:R (3.1484) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138168 4lf8:S (3.1484) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138169 4lf8:T (3.1484) BS01 rna ? GO:0003723 ... P80380 N/A
    138170 4lf8:T (3.1484) BS02 MG ? GO:0003723 ... P80380 N/A
    138171 4lf9:B (3.2811) BS01 rna ? GO:0003735 ... P80371 N/A
    138172 4lf9:B (3.2811) BS02 MG ? GO:0003735 ... P80371 N/A
    138173 4lf9:C (3.2811) BS01 rna ? GO:0003676 ... P80372 N/A
    138174 4lf9:D (3.2811) BS01 rna ? GO:0003723 ... P80373 N/A
    138175 4lf9:D (3.2811) BS02 MG ? GO:0003723 ... P80373 N/A
    138176 4lf9:E (3.2811) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    138177 4lf9:F (3.2811) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    138178 4lf9:G (3.2811) BS01 rna ? GO:0000028 ... P17291 N/A
    138179 4lf9:H (3.2811) BS01 rna N/A GO:0003735 ... N/A N/A
    138180 4lf9:I (3.2811) BS01 rna ? GO:0000049 ... P80374 N/A
    138181 4lf9:J (3.2811) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    138182 4lf9:K (3.2811) BS01 rna ? GO:0003735 ... P80376 N/A
    138183 4lf9:L (3.2811) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    138184 4lf9:L (3.2811) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    138185 4lf9:M (3.2811) BS01 rna ? GO:0000049 ... P80377 N/A
    138186 4lf9:M (3.2811) BS02 MG ? GO:0000049 ... P80377 N/A
    138187 4lf9:N (3.2811) BS01 rna N/A GO:0003735 ... N/A N/A
    138188 4lf9:N (3.2811) BS02 ZN N/A GO:0003735 ... N/A N/A
    138189 4lf9:O (3.2811) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    138190 4lf9:P (3.2811) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    138191 4lf9:Q (3.2811) BS01 rna N/A GO:0003735 ... N/A N/A
    138192 4lf9:R (3.2811) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    138193 4lf9:S (3.2811) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    138194 4lf9:T (3.2811) BS01 rna ? GO:0003723 ... P80380 N/A
    138195 4lfa:B (3.6461) BS01 rna ? GO:0003735 ... P80371 N/A
    138196 4lfa:B (3.6461) BS02 MG ? GO:0003735 ... P80371 N/A
    138197 4lfa:C (3.6461) BS01 rna ? GO:0003676 ... P80372 N/A
    138198 4lfa:D (3.6461) BS01 rna ? GO:0003723 ... P80373 N/A
    138199 4lfa:D (3.6461) BS02 MG ? GO:0003723 ... P80373 N/A
    138200 4lfa:E (3.6461) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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