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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    137801 4lc6:B (1.32) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    137802 4lc7:A (1.7) BS01 1WP 3.4.23.46 GO:0004190 ... P56817 N/A PDBbind: -logKd/Ki=4.93, IC50=11.8uM
    137803 4lc8:A (1.318) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    137804 4lc8:A (1.318) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    137805 4lc8:B (1.318) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    137806 4lc8:B (1.318) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    137807 4lc9:A (3.4) BS01 F6P ? GO:0001678 ... Q07071 23957911
    137808 4lcc:C (3.263) BS01 1XL ? GO:0002474 ... C1ITJ8
    P01888    		 24108697
    137809 4lck:A (3.2) BS01 rna ? GO:0003723 ... P46350 23892783 PDBbind: Kd=83nM
    137810 4lck:D (3.2) BS01 rna ? GO:0003723 ... P46350 23892783 PDBbind: Kd=83nM
    137811 4lcq:A (1.81) BS01 ZN ? GO:0004157 ... Q4SMR4 24005677
    137812 4lcq:A (1.81) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    137813 4lcq:A (1.81) BS03 URQ ? GO:0004157 ... Q4SMR4 24005677
    137814 4lcr:A (2.0) BS01 URP ? GO:0004157 ... Q4SMR4 24005677
    137815 4lcr:A (2.0) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    137816 4lcr:A (2.0) BS03 ZN ? GO:0004157 ... Q4SMR4 24005677
    137817 4lcs:A (2.2) BS01 ZN ? GO:0004157 ... Q4SMR4 24005677
    137818 4lcs:A (2.2) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    137819 4lcs:A (2.2) BS03 HYN ? GO:0004157 ... Q4SMR4 24005677
    137820 4lcv:C (2.0) BS01 CA ? GO:0016020 ... P70610 23994332
    137821 4lcv:C (2.0) BS02 CA ? GO:0016020 ... P70610 23994332
    137822 4lcz:A (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    137823 4lcz:A (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    137824 4lcz:A (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    137825 4lcz:A (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    137826 4lcz:A (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    137827 4lcz:A (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    137828 4lcz:A (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    137829 4lcz:A (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    137830 4lcz:A (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    137831 4lcz:A (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    137832 4lcz:A (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    137833 4lcz:A (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    137834 4lcz:A (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    137835 4lcz:A (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    137836 4lcz:B (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    137837 4lcz:B (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    137838 4lcz:B (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    137839 4lcz:B (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    137840 4lcz:B (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    137841 4lcz:B (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    137842 4lcz:B (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    137843 4lcz:B (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    137844 4lcz:B (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    137845 4lcz:B (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    137846 4lcz:B (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    137847 4lcz:B (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    137848 4lcz:B (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    137849 4lcz:B (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    137850 4lcz:B (2.6) BS15 CHL ? GO:0009765 ... P12333 24482437
    137851 4lcz:C (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    137852 4lcz:C (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    137853 4lcz:C (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    137854 4lcz:C (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    137855 4lcz:C (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    137856 4lcz:C (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    137857 4lcz:C (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    137858 4lcz:C (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    137859 4lcz:C (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    137860 4lcz:C (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    137861 4lcz:C (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    137862 4lcz:C (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    137863 4lcz:C (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    137864 4lcz:C (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    137865 4ld0:A (3.75) BS01 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    137866 4ld0:A (3.75) BS02 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    137867 4ld0:B (3.75) BS01 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    137868 4ld0:B (3.75) BS02 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    137869 4ld0:B (3.75) BS03 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    137870 4ld9:A (3.306) BS01 dna ? GO:0000786 ... P84233 23934150
    137871 4ld9:A (3.306) BS02 dna ? GO:0000786 ... P84233 23934150
    137872 4ld9:B (3.306) BS01 dna ? GO:0000786 ... P62799 23934150
    137873 4ld9:B (3.306) BS02 dna ? GO:0000786 ... P62799 23934150
    137874 4ld9:C (3.306) BS01 dna ? GO:0000786 ... P06897 23934150
    137875 4ld9:C (3.306) BS02 dna ? GO:0000786 ... P06897 23934150
    137876 4ld9:D (3.306) BS01 dna ? GO:0000786 ... P02281 23934150
    137877 4ld9:E (3.306) BS01 dna ? GO:0000786 ... P84233 23934150
    137878 4ld9:E (3.306) BS02 dna ? GO:0000786 ... P84233 23934150
    137879 4ld9:F (3.306) BS01 dna ? GO:0000786 ... P62799 23934150
    137880 4ld9:F (3.306) BS02 dna ? GO:0000786 ... P62799 23934150
    137881 4ld9:G (3.306) BS01 dna ? GO:0000786 ... P06897 23934150
    137882 4ld9:G (3.306) BS02 dna ? GO:0000786 ... P06897 23934150
    137883 4ld9:H (3.306) BS01 dna ? GO:0000786 ... P02281 23934150
    137884 4ld9:H (3.306) BS02 dna ? GO:0000786 ... P02281 23934150
    137885 4ldc:A (1.264) BS01 CA ? GO:0016020 ... P70610 23994332
    137886 4ldc:A (1.264) BS02 CA ? GO:0016020 ... P70610 23994332
    137887 4lde:A (2.79) BS01 P0G 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137888 4lde:A (2.79) BS02 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137889 4ldj:A (1.15) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 24889603
    137890 4ldl:A (3.1) BS01 XQC 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137891 4ldl:A (3.1) BS02 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137892 4ldo:A (3.2) BS01 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137893 4ldo:A (3.2) BS02 ALE 3.2.1.17 GO:0003796 ... P00720
    P07550    		 24056936
    137894 4ldx:A (2.9) BS01 dna ? GO:0003677 ... Q8L7G0 24485461
    137895 4ldx:A (2.9) BS02 dna ? GO:0003677 ... Q8L7G0 24485461
    137896 4ldx:B (2.9) BS01 dna ? GO:0003677 ... Q8L7G0 24485461
    137897 4ldx:B (2.9) BS02 dna ? GO:0003677 ... Q8L7G0 24485461
    137898 4ldz:A (2.31) BS01 MG ? GO:0000160 ... O34723 25406381
    137899 4ldz:A (2.31) BS02 BEF ? GO:0000160 ... O34723 25406381
    137900 4ldz:B (2.31) BS01 MG ? GO:0000160 ... O34723 25406381
    137901 4ldz:B (2.31) BS02 BEF ? GO:0000160 ... O34723 25406381
    137902 4lec:A (2.28) BS01 SAH 2.1.1.- GO:0005515 ... Q8WXB1 N/A
    137903 4lec:B (2.28) BS01 SAH 2.1.1.- GO:0005515 ... Q8WXB1 N/A
    137904 4lek:X (1.7) BS01 NAP 1.5.1.3 GO:0004146 ... P0A017 24428639
    137905 4lek:X (1.7) BS02 1DN 1.5.1.3 GO:0004146 ... P0A017 24428639 MOAD: Ki=0.16nM
    BindingDB: Ki=0.160000nM
    137906 4lel:QB (3.9) BS01 rna ? GO:0003735 ... P80371 25128388
    137907 4lel:QC (3.9) BS01 rna ? GO:0003676 ... P80372 25128388
    137908 4lel:QD (3.9) BS01 rna ? GO:0003723 ... P80373 25128388
    137909 4lel:QD (3.9) BS02 ZN ? GO:0003723 ... P80373 25128388
    137910 4lel:QE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    137911 4lel:QF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    137912 4lel:QG (3.9) BS01 rna ? GO:0000028 ... P17291 25128388
    137913 4lel:QH (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137914 4lel:QI (3.9) BS01 rna ? GO:0000049 ... P80374 25128388
    137915 4lel:QI (3.9) BS02 rna ? GO:0000049 ... P80374 25128388
    137916 4lel:QJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    137917 4lel:QJ (3.9) BS02 rna ? GO:0000049 ... Q5SHN7 25128388
    137918 4lel:QK (3.9) BS01 rna ? GO:0003735 ... P80376 25128388
    137919 4lel:QL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    137920 4lel:QM (3.9) BS01 rna ? GO:0000049 ... P80377 25128388
    137921 4lel:QM (3.9) BS02 rna ? GO:0000049 ... P80377 25128388
    137922 4lel:QM (3.9) BS03 MG ? GO:0000049 ... P80377 25128388
    137923 4lel:QN (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137924 4lel:QN (3.9) BS02 ZN N/A GO:0003735 ... N/A 25128388
    137925 4lel:QO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    137926 4lel:QO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    137927 4lel:QP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    137928 4lel:QQ (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137929 4lel:QR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    137930 4lel:QS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    137931 4lel:QT (3.9) BS01 rna ? GO:0003723 ... P80380 25128388
    137932 4lel:R0 (3.9) BS01 rna ? GO:0003735 ... P60493 25128388
    137933 4lel:R0 (3.9) BS02 rna ? GO:0003735 ... P60493 25128388
    137934 4lel:R0 (3.9) BS03 rna ? GO:0003735 ... P60493 25128388
    137935 4lel:R1 (3.9) BS01 rna ? GO:0003735 ... P60494 25128388
    137936 4lel:R2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    137937 4lel:R3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    137938 4lel:R4 (3.9) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    137939 4lel:R4 (3.9) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    137940 4lel:R5 (3.9) BS01 rna ? GO:0003735 ... P80339 25128388
    137941 4lel:R6 (3.9) BS01 rna ? GO:0000049 ... P35871 25128388
    137942 4lel:R7 (3.9) BS01 rna ? GO:0003735 ... P80340 25128388
    137943 4lel:R8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    137944 4lel:R9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    137945 4lel:RD (3.9) BS01 rna ? GO:0002181 ... P60405 25128388
    137946 4lel:RD (3.9) BS02 MG ? GO:0002181 ... P60405 25128388
    137947 4lel:RE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    137948 4lel:RF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    137949 4lel:RF (3.9) BS02 MG ? GO:0003735 ... Q5SHN9 25128388
    137950 4lel:RG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    137951 4lel:RG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    137952 4lel:RH (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137953 4lel:RI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    137954 4lel:RN (3.9) BS01 rna ? GO:0003729 ... P60488 25128388
    137955 4lel:RO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    137956 4lel:RO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    137957 4lel:RP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    137958 4lel:RP (3.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    137959 4lel:RQ (3.9) BS01 rna ? GO:0000049 ... P60489 25128388
    137960 4lel:RQ (3.9) BS02 rna ? GO:0000049 ... P60489 25128388
    137961 4lel:RR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    137962 4lel:RS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    137963 4lel:RS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    137964 4lel:RT (3.9) BS01 rna ? GO:0003735 ... P60490 25128388
    137965 4lel:RT (3.9) BS02 rna ? GO:0003735 ... P60490 25128388
    137966 4lel:RU (3.9) BS01 rna ? GO:0000027 ... P60491 25128388
    137967 4lel:RV (3.9) BS01 rna ? GO:0003723 ... P60492 25128388
    137968 4lel:RW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    137969 4lel:RX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    137970 4lel:RY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    137971 4lel:RZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    137972 4lel:RZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    137973 4lel:XB (3.9) BS01 rna ? GO:0003735 ... P80371 25128388
    137974 4lel:XC (3.9) BS01 rna ? GO:0003676 ... P80372 25128388
    137975 4lel:XD (3.9) BS01 rna ? GO:0003723 ... P80373 25128388
    137976 4lel:XD (3.9) BS02 ZN ? GO:0003723 ... P80373 25128388
    137977 4lel:XE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    137978 4lel:XF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    137979 4lel:XG (3.9) BS01 rna ? GO:0000028 ... P17291 25128388
    137980 4lel:XH (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137981 4lel:XI (3.9) BS01 rna ? GO:0000049 ... P80374 25128388
    137982 4lel:XI (3.9) BS02 rna ? GO:0000049 ... P80374 25128388
    137983 4lel:XJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    137984 4lel:XK (3.9) BS01 rna ? GO:0003735 ... P80376 25128388
    137985 4lel:XL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    137986 4lel:XM (3.9) BS01 rna ? GO:0000049 ... P80377 25128388
    137987 4lel:XM (3.9) BS02 rna ? GO:0000049 ... P80377 25128388
    137988 4lel:XM (3.9) BS03 MG ? GO:0000049 ... P80377 25128388
    137989 4lel:XN (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137990 4lel:XN (3.9) BS02 ZN N/A GO:0003735 ... N/A 25128388
    137991 4lel:XO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    137992 4lel:XO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    137993 4lel:XP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    137994 4lel:XQ (3.9) BS01 rna N/A GO:0003735 ... N/A 25128388
    137995 4lel:XR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    137996 4lel:XS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    137997 4lel:XT (3.9) BS01 rna ? GO:0003723 ... P80380 25128388
    137998 4lel:Y0 (3.9) BS01 rna ? GO:0003735 ... P60493 25128388
    137999 4lel:Y0 (3.9) BS02 rna ? GO:0003735 ... P60493 25128388
    138000 4lel:Y0 (3.9) BS03 rna ? GO:0003735 ... P60493 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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