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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133801 4ji4:C (3.692) BS01 rna ? GO:0003676 ... P80372 24152548
    133802 4ji4:C (3.692) BS02 MG ? GO:0003676 ... P80372 24152548
    133803 4ji4:D (3.692) BS01 rna ? GO:0003723 ... P80373 24152548
    133804 4ji4:D (3.692) BS02 MG ? GO:0003723 ... P80373 24152548
    133805 4ji4:E (3.692) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133806 4ji4:F (3.692) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133807 4ji4:G (3.692) BS01 rna ? GO:0000028 ... P17291 24152548
    133808 4ji4:H (3.692) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133809 4ji4:I (3.692) BS01 rna ? GO:0000049 ... P80374 24152548
    133810 4ji4:J (3.692) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133811 4ji4:J (3.692) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    133812 4ji4:K (3.692) BS01 rna ? GO:0003735 ... P80376 24152548
    133813 4ji4:L (3.692) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133814 4ji4:M (3.692) BS01 rna ? GO:0000049 ... P80377 24152548
    133815 4ji4:N (3.692) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133816 4ji4:N (3.692) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133817 4ji4:O (3.692) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133818 4ji4:P (3.692) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133819 4ji4:Q (3.692) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133820 4ji4:Q (3.692) BS02 MG ? GO:0003735 ... P0DOY7 24152548
    133821 4ji4:R (3.692) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133822 4ji4:S (3.692) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133823 4ji4:S (3.692) BS02 MG ? GO:0000028 ... Q5SHP2 24152548
    133824 4ji4:T (3.692) BS01 rna ? GO:0003723 ... P80380 24152548
    133825 4ji5:B (3.85) BS01 rna ? GO:0003735 ... P80371 24152548
    133826 4ji5:C (3.85) BS01 rna ? GO:0003676 ... P80372 24152548
    133827 4ji5:D (3.85) BS01 rna ? GO:0003723 ... P80373 24152548
    133828 4ji5:E (3.85) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133829 4ji5:F (3.85) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133830 4ji5:G (3.85) BS01 rna ? GO:0000028 ... P17291 24152548
    133831 4ji5:H (3.85) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133832 4ji5:I (3.85) BS01 rna ? GO:0000049 ... P80374 24152548
    133833 4ji5:J (3.85) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133834 4ji5:K (3.85) BS01 rna ? GO:0003735 ... P80376 24152548
    133835 4ji5:K (3.85) BS02 MG ? GO:0003735 ... P80376 24152548
    133836 4ji5:L (3.85) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133837 4ji5:L (3.85) BS02 MG ? GO:0000049 ... Q5SHN3 24152548
    133838 4ji5:M (3.85) BS01 rna ? GO:0000049 ... P80377 24152548
    133839 4ji5:N (3.85) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133840 4ji5:N (3.85) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133841 4ji5:O (3.85) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133842 4ji5:P (3.85) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133843 4ji5:Q (3.85) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133844 4ji5:R (3.85) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133845 4ji5:S (3.85) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133846 4ji5:T (3.85) BS01 rna ? GO:0003723 ... P80380 24152548
    133847 4ji6:B (3.55) BS01 rna ? GO:0003735 ... P80371 24152548
    133848 4ji6:B (3.55) BS02 MG ? GO:0003735 ... P80371 24152548
    133849 4ji6:C (3.55) BS01 rna ? GO:0003676 ... P80372 24152548
    133850 4ji6:D (3.55) BS01 rna ? GO:0003723 ... P80373 24152548
    133851 4ji6:E (3.55) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133852 4ji6:F (3.55) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133853 4ji6:G (3.55) BS01 rna ? GO:0000028 ... P17291 24152548
    133854 4ji6:H (3.55) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133855 4ji6:I (3.55) BS01 rna ? GO:0000049 ... P80374 24152548
    133856 4ji6:J (3.55) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133857 4ji6:K (3.55) BS01 rna ? GO:0003735 ... P80376 24152548
    133858 4ji6:K (3.55) BS02 MG ? GO:0003735 ... P80376 24152548
    133859 4ji6:K (3.55) BS03 MG ? GO:0003735 ... P80376 24152548
    133860 4ji6:L (3.55) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133861 4ji6:M (3.55) BS01 rna ? GO:0000049 ... P80377 24152548
    133862 4ji6:N (3.55) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133863 4ji6:N (3.55) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133864 4ji6:O (3.55) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133865 4ji6:P (3.55) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133866 4ji6:Q (3.55) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133867 4ji6:R (3.55) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133868 4ji6:S (3.55) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133869 4ji6:T (3.55) BS01 rna ? GO:0003723 ... P80380 24152548
    133870 4ji7:B (3.5) BS01 rna ? GO:0003735 ... P80371 24152548
    133871 4ji7:B (3.5) BS02 MG ? GO:0003735 ... P80371 24152548
    133872 4ji7:C (3.5) BS01 rna ? GO:0003676 ... P80372 24152548
    133873 4ji7:D (3.5) BS01 rna ? GO:0003723 ... P80373 24152548
    133874 4ji7:D (3.5) BS02 MG ? GO:0003723 ... P80373 24152548
    133875 4ji7:E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133876 4ji7:F (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133877 4ji7:G (3.5) BS01 rna ? GO:0000028 ... P17291 24152548
    133878 4ji7:H (3.5) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133879 4ji7:I (3.5) BS01 rna ? GO:0000049 ... P80374 24152548
    133880 4ji7:J (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133881 4ji7:K (3.5) BS01 rna ? GO:0003735 ... P80376 24152548
    133882 4ji7:K (3.5) BS02 MG ? GO:0003735 ... P80376 24152548
    133883 4ji7:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133884 4ji7:M (3.5) BS01 rna ? GO:0000049 ... P80377 24152548
    133885 4ji7:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133886 4ji7:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133887 4ji7:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133888 4ji7:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133889 4ji7:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133890 4ji7:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133891 4ji7:S (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133892 4ji7:T (3.5) BS01 rna ? GO:0003723 ... P80380 24152548
    133893 4ji8:B (3.742) BS01 rna ? GO:0003735 ... P80371 24152548
    133894 4ji8:B (3.742) BS02 MG ? GO:0003735 ... P80371 24152548
    133895 4ji8:C (3.742) BS01 rna ? GO:0003676 ... P80372 24152548
    133896 4ji8:D (3.742) BS01 rna ? GO:0003723 ... P80373 24152548
    133897 4ji8:D (3.742) BS02 ZN ? GO:0003723 ... P80373 24152548
    133898 4ji8:E (3.742) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133899 4ji8:F (3.742) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133900 4ji8:G (3.742) BS01 rna ? GO:0000028 ... P17291 24152548
    133901 4ji8:H (3.742) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133902 4ji8:I (3.742) BS01 rna ? GO:0000049 ... P80374 24152548
    133903 4ji8:J (3.742) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133904 4ji8:K (3.742) BS01 rna ? GO:0003735 ... P80376 24152548
    133905 4ji8:K (3.742) BS02 MG ? GO:0003735 ... P80376 24152548
    133906 4ji8:L (3.742) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133907 4ji8:L (3.742) BS02 SRY ? GO:0000049 ... Q5SHN3 24152548
    133908 4ji8:M (3.742) BS01 rna ? GO:0000049 ... P80377 24152548
    133909 4ji8:N (3.742) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133910 4ji8:N (3.742) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133911 4ji8:O (3.742) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133912 4ji8:P (3.742) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133913 4ji8:Q (3.742) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133914 4ji8:R (3.742) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133915 4ji8:S (3.742) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133916 4ji8:T (3.742) BS01 rna ? GO:0003723 ... P80380 24152548
    133917 4jic:A (1.6) BS01 FMN ? GO:0000166 ... O31246 23606302
    133918 4jic:B (1.6) BS01 FMN ? GO:0000166 ... O31246 23606302
    133919 4jic:C (1.6) BS01 FMN ? GO:0000166 ... O31246 23606302
    133920 4jih:A (2.3) BS01 EPR 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 24100137 MOAD: ic50=0.33uM
    133921 4jih:A (2.3) BS02 NAP 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 24100137
    133922 4jii:X (2.2) BS01 NAP 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 24100137
    133923 4jii:X (2.2) BS02 ZST 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 24100137 MOAD: ic50=0.62uM
    BindingDB: IC50=620nM
    133924 4jij:A (1.698) BS01 peptide 3.4.24.35 GO:0004222 ... P14780 24583051
    133925 4jij:A (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    133926 4jij:A (1.698) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    133927 4jij:A (1.698) BS04 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    133928 4jij:A (1.698) BS05 CA 3.4.24.35 GO:0004222 ... P14780 24583051
    133929 4jij:B (1.698) BS01 peptide 3.4.24.35 GO:0004222 ... P14780 24583051
    133930 4jij:B (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    133931 4jij:B (1.698) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    133932 4jij:B (1.698) BS04 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    133933 4jij:B (1.698) BS05 CA 3.4.24.35 GO:0004222 ... P14780 24583051
    133934 4jip:A (2.29) BS01 FMN ? GO:0000166 ... O31246 23606302
    133935 4jip:A (2.29) BS02 HBA ? GO:0000166 ... O31246 23606302
    133936 4jiq:A (2.49) BS01 FMN ? GO:0000166 ... O31246 23606302
    133937 4jiq:A (2.49) BS02 1L5 ? GO:0000166 ... O31246 23606302 MOAD: Kd=0.73mM
    133938 4jir:A (2.0) BS01 EPR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 24100137 MOAD: ic50=0.021uM
    133939 4jir:A (2.0) BS02 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 24100137
    133940 4jit:B (2.8) BS01 3ZF 2.4.2.-
    2.4.2.22    		 GO:0000287 ... P0A9M5 23927482 PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    133941 4jit:C (2.8) BS01 3ZF 2.4.2.-
    2.4.2.22    		 GO:0000287 ... P0A9M5 23927482 PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    133942 4jiv:D (1.903) BS01 ZN ? GO:0003674 ... Q9KN60 23925114
    133943 4jj0:A (1.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    133944 4jj0:A (1.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    133945 4jj0:B (1.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    133946 4jj0:B (1.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    133947 4jj3:A (2.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    133948 4jj3:A (2.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    133949 4jj3:B (2.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    133950 4jj3:B (2.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    133951 4jje:A (1.481) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 23614665
    133952 4jji:A (1.8) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133953 4jji:A (1.8) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133954 4jji:A (1.8) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133955 4jji:B (1.8) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133956 4jji:B (1.8) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133957 4jji:B (1.8) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284    		 GO:0004022 ... Q96533 N/A
    133958 4jjn:A (3.09) BS01 dna ? GO:0000500 ... P61830 23650358
    133959 4jjn:A (3.09) BS02 dna ? GO:0000500 ... P61830 23650358
    133960 4jjn:B (3.09) BS01 dna ? GO:0000500 ... P02309 23650358
    133961 4jjn:B (3.09) BS02 dna ? GO:0000500 ... P02309 23650358
    133962 4jjn:C (3.09) BS01 dna ? GO:0000786 ... P04912 23650358
    133963 4jjn:C (3.09) BS02 dna ? GO:0000786 ... P04912 23650358
    133964 4jjn:D (3.09) BS01 dna ? GO:0000786 ... P02294 23650358
    133965 4jjn:D (3.09) BS02 dna ? GO:0000786 ... P02294 23650358
    133966 4jjn:E (3.09) BS01 dna ? GO:0000500 ... P61830 23650358
    133967 4jjn:E (3.09) BS02 dna ? GO:0000500 ... P61830 23650358
    133968 4jjn:F (3.09) BS01 dna ? GO:0000500 ... P02309 23650358
    133969 4jjn:F (3.09) BS02 dna ? GO:0000500 ... P02309 23650358
    133970 4jjn:G (3.09) BS01 dna ? GO:0000786 ... P04912 23650358
    133971 4jjn:G (3.09) BS02 dna ? GO:0000786 ... P04912 23650358
    133972 4jjn:H (3.09) BS01 dna ? GO:0000786 ... P02294 23650358
    133973 4jjn:H (3.09) BS02 dna ? GO:0000786 ... P02294 23650358
    133974 4jk0:D (2.3) BS01 rna ? GO:0044423 ... P69517 N/A
    133975 4jk1:D (3.9) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133976 4jk1:D (3.9) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133977 4jk1:D (3.9) BS03 G4P 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133978 4jk1:E (3.9) BS01 G4P 2.7.7.6 GO:0000345 ... P0A800 23620295
    133979 4jk1:I (3.9) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133980 4jk1:I (3.9) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133981 4jk2:D (4.201) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133982 4jk2:D (4.201) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133983 4jk2:D (4.201) BS03 0O2 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133984 4jk2:E (4.201) BS01 0O2 2.7.7.6 GO:0000345 ... P0A800 23620295
    133985 4jk2:I (4.201) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133986 4jk2:I (4.201) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 23620295
    133987 4jk4:A (2.653) BS01 DIU ? GO:0003677 ... P02769 23769932
    133988 4jk4:A (2.653) BS02 DIU ? GO:0003677 ... P02769 23769932
    133989 4jk4:A (2.653) BS03 DIU ? GO:0003677 ... P02769 23769932
    133990 4jk4:A (2.653) BS04 DIU ? GO:0003677 ... P02769 23769932
    133991 4jk4:A (2.653) BS05 CA ? GO:0003677 ... P02769 23769932
    133992 4jk4:A (2.653) BS06 CA ? GO:0003677 ... P02769 23769932
    133993 4jk4:A (2.653) BS07 CA ? GO:0003677 ... P02769 23769932
    133994 4jk4:B (2.653) BS01 DIU ? GO:0003677 ... P02769 23769932
    133995 4jk4:B (2.653) BS02 DIU ? GO:0003677 ... P02769 23769932
    133996 4jk4:B (2.653) BS03 DIU ? GO:0003677 ... P02769 23769932
    133997 4jk4:B (2.653) BS04 DIU ? GO:0003677 ... P02769 23769932
    133998 4jk4:B (2.653) BS05 CA ? GO:0003677 ... P02769 23769932
    133999 4jk4:B (2.653) BS06 CA ? GO:0003677 ... P02769 23769932
    134000 4jk9:A (1.5) BS01 CO ? GO:0000398 ... Q6P2Q9 23686287
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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