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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133601 4jfw:D (2.1) BS01 H58 ? GO:0004560 ... Q8A3I4 23740878 MOAD: Ki=0.46uM
    133602 4jg4:A (2.296) BS01 PPV 3.1.26.5 GO:0000049 ... P25814 24364358
    133603 4jg4:A (2.296) BS02 PPV 3.1.26.5 GO:0000049 ... P25814 24364358
    133604 4jgd:A (2.05) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    133605 4jgd:A (2.05) BS02 4JG 1.3.5.2 GO:0004151 ... Q02127 N/A BindingDB: IC50=562nM
    133606 4jgi:A (1.5) BS01 COB ? GO:0005829 ... Q8RPG0 23897483
    133607 4jgi:B (1.5) BS01 COB ? GO:0005829 ... Q8RPG0 23897483
    133608 4jgn:A (1.86) BS01 rna ? GO:0044423 ... P69517 N/A
    133609 4jgt:A (2.161) BS01 PYR 2.8.1.2 GO:0000098 ... P25325 23698001
    133610 4jgt:B (2.161) BS01 PYR 2.8.1.2 GO:0000098 ... P25325 23698001
    133611 4jgt:C (2.161) BS01 PYR 2.8.1.2 GO:0000098 ... P25325 23698001
    133612 4jgv:A (3.01) BS01 T94 ? GO:0003677 ... P22736 24316735 PDBbind: -logKd/Ki=6.57, Kd=0.27uM
    133613 4jgx:A (2.2) BS01 PLM ? GO:0005777 ... P80547 24241823
    133614 4jgx:B (2.2) BS01 PLM ? GO:0005777 ... P80547 24241823
    133615 4jh0:A (2.35) BS01 1MD 3.4.14.5 GO:0001618 ... P27487 23964740 MOAD: Ki=0.94nM
    PDBbind: -logKd/Ki=9.03, Ki=0.94nM
    133616 4jh0:B (2.35) BS01 1MD 3.4.14.5 GO:0001618 ... P27487 23964740 MOAD: Ki=0.94nM
    133617 4jh1:A (1.55) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133618 4jh1:B (1.55) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133619 4jh2:A (1.27) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133620 4jh2:B (1.27) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133621 4jh3:A (1.5) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133622 4jh3:A (1.5) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133623 4jh3:A (1.5) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133624 4jh3:B (1.5) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133625 4jh3:B (1.5) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133626 4jh3:B (1.5) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133627 4jh4:A (1.9) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133628 4jh4:A (1.9) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133629 4jh4:B (1.9) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133630 4jh4:B (1.9) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133631 4jh5:A (1.77) BS01 CO 2.5.1.- GO:0000287 ... Q739M9 24004181
    133632 4jh5:A (1.77) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133633 4jh5:A (1.77) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133634 4jh5:B (1.77) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133635 4jh5:B (1.77) BS02 CO 2.5.1.- GO:0000287 ... Q739M9 24004181
    133636 4jh5:B (1.77) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133637 4jh6:A (1.32) BS01 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133638 4jh6:A (1.32) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133639 4jh6:A (1.32) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133640 4jh6:B (1.32) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133641 4jh6:B (1.32) BS02 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133642 4jh6:B (1.32) BS03 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133643 4jh7:A (1.55) BS01 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133644 4jh7:A (1.55) BS02 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133645 4jh7:A (1.55) BS03 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133646 4jh7:B (1.55) BS01 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133647 4jh7:B (1.55) BS02 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133648 4jh7:B (1.55) BS03 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133649 4jh8:A (1.41) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133650 4jh8:A (1.41) BS02 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133651 4jh8:A (1.41) BS03 CYS 2.5.1.- GO:0000287 ... Q739M9 24004181
    133652 4jh8:A (1.41) BS04 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133653 4jh8:B (1.41) BS01 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133654 4jh8:B (1.41) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133655 4jh8:B (1.41) BS03 CYS 2.5.1.- GO:0000287 ... Q739M9 24004181
    133656 4jh8:B (1.41) BS04 FCN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133657 4jh8:B (1.41) BS05 CYS 2.5.1.- GO:0000287 ... Q739M9 24004181
    133658 4jh9:A (1.77) BS01 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133659 4jh9:A (1.77) BS02 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133660 4jh9:A (1.77) BS03 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133661 4jh9:B (1.77) BS01 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133662 4jh9:B (1.77) BS02 MN 2.5.1.- GO:0000287 ... Q739M9 24004181
    133663 4jh9:B (1.77) BS03 1KM 2.5.1.- GO:0000287 ... Q739M9 24004181
    133664 4jhd:A (2.91) BS01 ANP 3.6.4.- GO:0000281 ... P10987 23727244
    133665 4jhd:B (2.91) BS01 ANP 3.6.4.- GO:0000281 ... P10987 23727244
    133666 4jhd:D (2.91) BS01 ANP 3.6.4.- GO:0000281 ... P10987 23727244
    133667 4jhd:E (2.91) BS01 ANP 3.6.4.- GO:0000281 ... P10987 23727244
    133668 4jhj:A (3.25) BS01 peptide ? GO:0002191 ... Q5EAQ1 23804756
    133669 4jhj:A (3.25) BS02 peptide ? GO:0002191 ... Q5EAQ1 23804756
    133670 4jhj:B (3.25) BS01 peptide ? GO:0002191 ... Q5EAQ1 23804756
    133671 4jhj:B (3.25) BS02 peptide ? GO:0002191 ... Q5EAQ1 23804756
    133672 4jhk:A (2.507) BS01 peptide ? GO:0002191 ... Q5EAQ1 23804756
    133673 4jhq:A (1.99) BS01 B6F ? GO:0005576 ... P02701 N/A PDBbind: -logKd/Ki=7.74, IC50=18nM
    133674 4jhq:B (1.99) BS01 B6F ? GO:0005576 ... P02701 N/A
    133675 4jht:A (1.18) BS01 8XQ 1.14.11.33 GO:0005515 ... P05050 26682036 PDBbind: -logKd/Ki=4.99, IC50=10.2uM
    133676 4jht:A (1.18) BS02 MN 1.14.11.33 GO:0005515 ... P05050 26682036
    133677 4jhu:A (1.89) BS01 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133678 4jhu:A (1.89) BS02 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133679 4jhu:A (1.89) BS03 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133680 4jhu:A (1.89) BS04 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133681 4jhu:A (1.89) BS05 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133682 4jhv:A (1.6) BS01 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133683 4jhv:A (1.6) BS02 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133684 4jhv:A (1.6) BS03 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133685 4jhv:A (1.6) BS04 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    133686 4jhx:A (1.85) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    133687 4jhx:A (1.85) BS02 ARG 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    133688 4jhx:C (1.85) BS01 CP 2.1.3.3 GO:0004585 ... Q8DCF5 N/A
    133689 4jhz:A (2.831) BS01 1KV 3.2.1.31 GO:0004553 ... P05804 23690068 PDBbind: -logKd/Ki=6.02, Ki=957nM
    BindingDB: Ki=9.6e+2nM
    133690 4jhz:B (2.831) BS01 1KV 3.2.1.31 GO:0004553 ... P05804 23690068 BindingDB: Ki=9.6e+2nM
    133691 4ji0:B (3.492) BS01 rna ? GO:0003735 ... P80371 24152548
    133692 4ji0:B (3.492) BS02 MG ? GO:0003735 ... P80371 24152548
    133693 4ji0:C (3.492) BS01 rna ? GO:0003676 ... P80372 24152548
    133694 4ji0:C (3.492) BS02 MG ? GO:0003676 ... P80372 24152548
    133695 4ji0:D (3.492) BS01 rna ? GO:0003723 ... P80373 24152548
    133696 4ji0:D (3.492) BS02 MG ? GO:0003723 ... P80373 24152548
    133697 4ji0:E (3.492) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133698 4ji0:F (3.492) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133699 4ji0:G (3.492) BS01 rna ? GO:0000028 ... P17291 24152548
    133700 4ji0:H (3.492) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133701 4ji0:I (3.492) BS01 rna ? GO:0000049 ... P80374 24152548
    133702 4ji0:I (3.492) BS02 MG ? GO:0000049 ... P80374 24152548
    133703 4ji0:J (3.492) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133704 4ji0:J (3.492) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    133705 4ji0:K (3.492) BS01 rna ? GO:0003735 ... P80376 24152548
    133706 4ji0:L (3.492) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133707 4ji0:M (3.492) BS01 rna ? GO:0000049 ... P80377 24152548
    133708 4ji0:N (3.492) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133709 4ji0:N (3.492) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133710 4ji0:O (3.492) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133711 4ji0:P (3.492) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133712 4ji0:Q (3.492) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133713 4ji0:Q (3.492) BS02 MG ? GO:0003735 ... P0DOY7 24152548
    133714 4ji0:R (3.492) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133715 4ji0:S (3.492) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133716 4ji0:T (3.492) BS01 rna ? GO:0003723 ... P80380 24152548
    133717 4ji1:B (3.144) BS01 rna ? GO:0003735 ... P80371 24152548
    133718 4ji1:B (3.144) BS02 MG ? GO:0003735 ... P80371 24152548
    133719 4ji1:C (3.144) BS01 rna ? GO:0003676 ... P80372 24152548
    133720 4ji1:D (3.144) BS01 rna ? GO:0003723 ... P80373 24152548
    133721 4ji1:D (3.144) BS02 MG ? GO:0003723 ... P80373 24152548
    133722 4ji1:D (3.144) BS03 MG ? GO:0003723 ... P80373 24152548
    133723 4ji1:E (3.144) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133724 4ji1:F (3.144) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133725 4ji1:G (3.144) BS01 rna ? GO:0000028 ... P17291 24152548
    133726 4ji1:H (3.144) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133727 4ji1:H (3.144) BS02 MG ? GO:0003735 ... P0DOY9 24152548
    133728 4ji1:H (3.144) BS03 MG ? GO:0003735 ... P0DOY9 24152548
    133729 4ji1:I (3.144) BS01 rna ? GO:0000049 ... P80374 24152548
    133730 4ji1:J (3.144) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133731 4ji1:J (3.144) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    133732 4ji1:J (3.144) BS03 MG ? GO:0000049 ... Q5SHN7 24152548
    133733 4ji1:K (3.144) BS01 rna ? GO:0003735 ... P80376 24152548
    133734 4ji1:L (3.144) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133735 4ji1:L (3.144) BS02 SRY ? GO:0000049 ... Q5SHN3 24152548
    133736 4ji1:L (3.144) BS03 MG ? GO:0000049 ... Q5SHN3 24152548
    133737 4ji1:M (3.144) BS01 rna ? GO:0000049 ... P80377 24152548
    133738 4ji1:N (3.144) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133739 4ji1:N (3.144) BS02 MG ? GO:0003735 ... P0DOY6 24152548
    133740 4ji1:O (3.144) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133741 4ji1:P (3.144) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133742 4ji1:Q (3.144) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133743 4ji1:R (3.144) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133744 4ji1:S (3.144) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133745 4ji1:T (3.144) BS01 rna ? GO:0003723 ... P80380 24152548
    133746 4ji1:T (3.144) BS02 MG ? GO:0003723 ... P80380 24152548
    133747 4ji2:B (3.64) BS01 rna ? GO:0003735 ... P80371 24152548
    133748 4ji2:B (3.64) BS02 MG ? GO:0003735 ... P80371 24152548
    133749 4ji2:B (3.64) BS03 MG ? GO:0003735 ... P80371 24152548
    133750 4ji2:C (3.64) BS01 rna ? GO:0003676 ... P80372 24152548
    133751 4ji2:C (3.64) BS02 MG ? GO:0003676 ... P80372 24152548
    133752 4ji2:D (3.64) BS01 rna ? GO:0003723 ... P80373 24152548
    133753 4ji2:D (3.64) BS02 MG ? GO:0003723 ... P80373 24152548
    133754 4ji2:E (3.64) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133755 4ji2:F (3.64) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133756 4ji2:G (3.64) BS01 rna ? GO:0000028 ... P17291 24152548
    133757 4ji2:H (3.64) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133758 4ji2:I (3.64) BS01 rna ? GO:0000049 ... P80374 24152548
    133759 4ji2:I (3.64) BS02 MG ? GO:0000049 ... P80374 24152548
    133760 4ji2:J (3.64) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133761 4ji2:J (3.64) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    133762 4ji2:K (3.64) BS01 rna ? GO:0003735 ... P80376 24152548
    133763 4ji2:L (3.64) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133764 4ji2:M (3.64) BS01 rna ? GO:0000049 ... P80377 24152548
    133765 4ji2:N (3.64) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133766 4ji2:N (3.64) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    133767 4ji2:O (3.64) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133768 4ji2:P (3.64) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133769 4ji2:Q (3.64) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133770 4ji2:Q (3.64) BS02 MG ? GO:0003735 ... P0DOY7 24152548
    133771 4ji2:R (3.64) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133772 4ji2:S (3.64) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133773 4ji2:T (3.64) BS01 rna ? GO:0003723 ... P80380 24152548
    133774 4ji3:B (3.35) BS01 rna ? GO:0003735 ... P80371 24152548
    133775 4ji3:B (3.35) BS02 MG ? GO:0003735 ... P80371 24152548
    133776 4ji3:B (3.35) BS03 MG ? GO:0003735 ... P80371 24152548
    133777 4ji3:C (3.35) BS01 rna ? GO:0003676 ... P80372 24152548
    133778 4ji3:C (3.35) BS02 MG ? GO:0003676 ... P80372 24152548
    133779 4ji3:D (3.35) BS01 rna ? GO:0003723 ... P80373 24152548
    133780 4ji3:D (3.35) BS02 MG ? GO:0003723 ... P80373 24152548
    133781 4ji3:E (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    133782 4ji3:F (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    133783 4ji3:G (3.35) BS01 rna ? GO:0000028 ... P17291 24152548
    133784 4ji3:H (3.35) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    133785 4ji3:I (3.35) BS01 rna ? GO:0000049 ... P80374 24152548
    133786 4ji3:J (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    133787 4ji3:J (3.35) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    133788 4ji3:K (3.35) BS01 rna ? GO:0003735 ... P80376 24152548
    133789 4ji3:L (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    133790 4ji3:L (3.35) BS02 SRY ? GO:0000049 ... Q5SHN3 24152548
    133791 4ji3:M (3.35) BS01 rna ? GO:0000049 ... P80377 24152548
    133792 4ji3:N (3.35) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    133793 4ji3:O (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    133794 4ji3:P (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    133795 4ji3:Q (3.35) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    133796 4ji3:Q (3.35) BS02 MG ? GO:0003735 ... P0DOY7 24152548
    133797 4ji3:R (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    133798 4ji3:S (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    133799 4ji3:T (3.35) BS01 rna ? GO:0003723 ... P80380 24152548
    133800 4ji4:B (3.692) BS01 rna ? GO:0003735 ... P80371 24152548
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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