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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133201 4j6w:C (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    133202 4j6w:C (1.8) BS03 C ? GO:0003723 ... Q9HUM0 23897473
    133203 4j6w:D (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    133204 4j6w:D (1.8) BS02 CTP ? GO:0003723 ... Q9HUM0 23897473
    133205 4j6w:D (1.8) BS03 MG ? GO:0003723 ... Q9HUM0 23897473
    133206 4j6w:D (1.8) BS04 CDP ? GO:0003723 ... Q9HUM0 23897473
    133207 4j6w:E (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    133208 4j6w:E (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    133209 4j6w:E (1.8) BS03 CTP ? GO:0003723 ... Q9HUM0 23897473
    133210 4j6w:F (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    133211 4j6w:F (1.8) BS02 CDP ? GO:0003723 ... Q9HUM0 23897473
    133212 4j6w:F (1.8) BS03 CTP ? GO:0003723 ... Q9HUM0 23897473
    133213 4j6x:A (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133214 4j6x:B (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133215 4j6x:C (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133216 4j6x:D (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133217 4j6x:E (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133218 4j6x:F (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    133219 4j70:K (2.8) BS01 1KR 3.4.25.1 GO:0004298 ... P30656 23547757 PDBbind: -logKd/Ki=5.24, IC50=5.7uM
    133220 4j70:Y (2.8) BS01 1KR 3.4.25.1 GO:0004298 ... P30656 23547757
    133221 4j71:A (2.31) BS01 1JX 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A BindingDB: Kd=600000nM
    133222 4j71:B (2.31) BS01 1JX 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A BindingDB: Kd=600000nM
    133223 4j74:A (1.2) BS01 I18 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=26uM
    PDBbind: -logKd/Ki=4.59, Kd=26uM
    133224 4j74:A (1.2) BS02 I18 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=26uM
    PDBbind: -logKd/Ki=4.59, Kd=26uM
    133225 4j7c:A (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133226 4j7c:B (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133227 4j7c:C (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133228 4j7c:D (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133229 4j7c:E (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133230 4j7c:F (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133231 4j7c:G (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133232 4j7c:G (3.5) BS02 ATP ? GO:0005515 ... O32080 23598340
    133233 4j7c:H (3.5) BS01 ATP ? GO:0005515 ... O32080 23598340
    133234 4j7c:I (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    133235 4j7c:J (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    133236 4j7c:K (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    133237 4j7c:L (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    133238 4j7d:A (1.25) BS01 I31 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    133239 4j7e:A (1.63) BS01 I29 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    133240 4j7f:A (1.59) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 N/A
    133241 4j7f:A (1.59) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 N/A
    133242 4j7i:A (2.56) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    133243 4j7i:A (2.56) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    133244 4j7l:A (1.8) BS01 rna 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133245 4j7l:A (1.8) BS02 UBD 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133246 4j7l:A (1.8) BS03 MG 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133247 4j7l:A (1.8) BS04 MG 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133248 4j7m:A (1.7) BS01 rna 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133249 4j7m:A (1.7) BS02 UBD 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133250 4j7m:A (1.7) BS03 UBD 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133251 4j7m:A (1.7) BS04 CA 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133252 4j7n:A (1.5) BS01 GTG 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133253 4j7n:A (1.5) BS02 GTG 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 23523372
    133254 4j7q:A (1.55) BS01 B7N ? GO:0005737 ... P53860 23603387
    133255 4j7q:A (1.55) BS02 B7N ? GO:0005737 ... P53860 23603387
    133256 4j7q:B (1.55) BS01 B7N ? GO:0005737 ... P53860 23603387
    133257 4j7q:B (1.55) BS02 B7N ? GO:0005737 ... P53860 23603387
    133258 4j7t:A (3.203) BS01 1JO 2.5.1.-
    4.4.1.20    		 GO:0004364 ... Q16873 24366866
    133259 4j7u:A (2.44) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 23704574
    133260 4j7u:A (2.44) BS02 YTZ 1.1.1.153 GO:0004033 ... P35270 23704574 MOAD: Ki=14nM
    133261 4j7u:B (2.44) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 23704574
    133262 4j7u:B (2.44) BS02 YTZ 1.1.1.153 GO:0004033 ... P35270 23704574 MOAD: Ki=14nM
    133263 4j7u:C (2.44) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 23704574
    133264 4j7u:C (2.44) BS02 YTZ 1.1.1.153 GO:0004033 ... P35270 23704574 MOAD: Ki=14nM
    133265 4j7u:D (2.44) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 23704574
    133266 4j7u:D (2.44) BS02 YTZ 1.1.1.153 GO:0004033 ... P35270 23704574 MOAD: Ki=14nM
    133267 4j7v:A (1.54) BS01 RBN 3.2.1.17 GO:0003796 ... P00698 N/A
    133268 4j7x:A (2.6) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 N/A
    133269 4j7x:A (2.6) BS02 SAS 1.1.1.153 GO:0004033 ... P35270 N/A
    133270 4j7x:B (2.6) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 N/A
    133271 4j7x:B (2.6) BS02 SAS 1.1.1.153 GO:0004033 ... P35270 N/A
    133272 4j7x:F (2.6) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 N/A
    133273 4j7x:F (2.6) BS02 SAS 1.1.1.153 GO:0004033 ... P35270 N/A
    133274 4j7x:J (2.6) BS01 NAP 1.1.1.153 GO:0004033 ... P35270 N/A
    133275 4j7x:J (2.6) BS02 SAS 1.1.1.153 GO:0004033 ... P35270 N/A
    133276 4j7y:A (2.901) BS01 1JP 2.5.1.-
    4.4.1.20    		 GO:0004364 ... Q16873 24366866
    133277 4j83:A (1.7) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    133278 4j83:A (1.7) BS02 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    133279 4j8o:A (1.63) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    133280 4j8o:A (1.63) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 24093804 BindingDB: IC50=30000nM
    133281 4j8s:A (1.55) BS01 peptide ? GO:0017148 ... A5YKK6 23644599
    133282 4j8u:A (2.38) BS01 dna ? GO:0000786 ... P84233 N/A
    133283 4j8u:A (2.38) BS02 dna ? GO:0000786 ... P84233 N/A
    133284 4j8u:B (2.38) BS01 dna ? GO:0000786 ... P62799 N/A
    133285 4j8u:B (2.38) BS02 dna ? GO:0000786 ... P62799 N/A
    133286 4j8u:C (2.38) BS01 dna ? GO:0000786 ... P06897 N/A
    133287 4j8u:C (2.38) BS02 dna ? GO:0000786 ... P06897 N/A
    133288 4j8u:D (2.38) BS01 dna ? GO:0000786 ... P02281 N/A
    133289 4j8u:D (2.38) BS02 dna ? GO:0000786 ... P02281 N/A
    133290 4j8u:E (2.38) BS01 dna ? GO:0000786 ... P84233 N/A
    133291 4j8u:E (2.38) BS02 dna ? GO:0000786 ... P84233 N/A
    133292 4j8u:F (2.38) BS01 dna ? GO:0000786 ... P62799 N/A
    133293 4j8u:F (2.38) BS02 dna ? GO:0000786 ... P62799 N/A
    133294 4j8u:F (2.38) BS03 ELJ ? GO:0000786 ... P62799 N/A
    133295 4j8u:G (2.38) BS01 dna ? GO:0000786 ... P06897 N/A
    133296 4j8u:G (2.38) BS02 dna ? GO:0000786 ... P06897 N/A
    133297 4j8u:H (2.38) BS01 dna ? GO:0000786 ... P02281 N/A
    133298 4j8u:H (2.38) BS02 dna ? GO:0000786 ... P02281 N/A
    133299 4j8u:H (2.38) BS03 ELJ ? GO:0000786 ... P02281 N/A
    133300 4j8u:H (2.38) BS04 ELJ ? GO:0000786 ... P02281 N/A
    133301 4j8v:A (2.58) BS01 dna ? GO:0000786 ... P84233 N/A
    133302 4j8v:A (2.58) BS02 dna ? GO:0000786 ... P84233 N/A
    133303 4j8v:B (2.58) BS01 dna ? GO:0000786 ... P62799 N/A
    133304 4j8v:B (2.58) BS02 dna ? GO:0000786 ... P62799 N/A
    133305 4j8v:C (2.58) BS01 dna ? GO:0000786 ... P06897 N/A
    133306 4j8v:C (2.58) BS02 dna ? GO:0000786 ... P06897 N/A
    133307 4j8v:D (2.58) BS01 dna ? GO:0000786 ... P02281 N/A
    133308 4j8v:D (2.58) BS02 dna ? GO:0000786 ... P02281 N/A
    133309 4j8v:E (2.58) BS01 dna ? GO:0000786 ... P84233 N/A
    133310 4j8v:E (2.58) BS02 dna ? GO:0000786 ... P84233 N/A
    133311 4j8v:F (2.58) BS01 dna ? GO:0000786 ... P62799 N/A
    133312 4j8v:F (2.58) BS02 dna ? GO:0000786 ... P62799 N/A
    133313 4j8v:G (2.58) BS01 dna ? GO:0000786 ... P06897 N/A
    133314 4j8v:G (2.58) BS02 dna ? GO:0000786 ... P06897 N/A
    133315 4j8v:H (2.58) BS01 dna ? GO:0000786 ... P02281 N/A
    133316 4j8v:H (2.58) BS02 dna ? GO:0000786 ... P02281 N/A
    133317 4j8w:A (2.41) BS01 dna ? GO:0000786 ... P84233 N/A
    133318 4j8w:A (2.41) BS02 dna ? GO:0000786 ... P84233 N/A
    133319 4j8w:B (2.41) BS01 dna ? GO:0000786 ... P62799 N/A
    133320 4j8w:B (2.41) BS02 dna ? GO:0000786 ... P62799 N/A
    133321 4j8w:B (2.41) BS03 1MK ? GO:0000786 ... P62799 N/A
    133322 4j8w:C (2.41) BS01 dna ? GO:0000786 ... P06897 N/A
    133323 4j8w:C (2.41) BS02 dna ? GO:0000786 ... P06897 N/A
    133324 4j8w:D (2.41) BS01 dna ? GO:0000786 ... P02281 N/A
    133325 4j8w:D (2.41) BS02 dna ? GO:0000786 ... P02281 N/A
    133326 4j8w:D (2.41) BS03 1MK ? GO:0000786 ... P02281 N/A
    133327 4j8w:E (2.41) BS01 dna ? GO:0000786 ... P84233 N/A
    133328 4j8w:E (2.41) BS02 dna ? GO:0000786 ... P84233 N/A
    133329 4j8w:F (2.41) BS01 dna ? GO:0000786 ... P62799 N/A
    133330 4j8w:F (2.41) BS02 dna ? GO:0000786 ... P62799 N/A
    133331 4j8w:F (2.41) BS03 1MK ? GO:0000786 ... P62799 N/A
    133332 4j8w:G (2.41) BS01 dna ? GO:0000786 ... P06897 N/A
    133333 4j8w:G (2.41) BS02 dna ? GO:0000786 ... P06897 N/A
    133334 4j8w:G (2.41) BS03 1MK ? GO:0000786 ... P06897 N/A
    133335 4j8w:H (2.41) BS01 dna ? GO:0000786 ... P02281 N/A
    133336 4j8w:H (2.41) BS02 dna ? GO:0000786 ... P02281 N/A
    133337 4j8w:H (2.41) BS03 1MK ? GO:0000786 ... P02281 N/A
    133338 4j8x:A (2.87) BS01 dna ? GO:0000786 ... P84233 N/A
    133339 4j8x:A (2.87) BS02 dna ? GO:0000786 ... P84233 N/A
    133340 4j8x:B (2.87) BS01 dna ? GO:0000786 ... P62799 N/A
    133341 4j8x:B (2.87) BS02 dna ? GO:0000786 ... P62799 N/A
    133342 4j8x:C (2.87) BS01 dna ? GO:0000786 ... P06897 N/A
    133343 4j8x:C (2.87) BS02 dna ? GO:0000786 ... P06897 N/A
    133344 4j8x:D (2.87) BS01 dna ? GO:0000786 ... P02281 N/A
    133345 4j8x:D (2.87) BS02 dna ? GO:0000786 ... P02281 N/A
    133346 4j8x:E (2.87) BS01 dna ? GO:0000786 ... P84233 N/A
    133347 4j8x:E (2.87) BS02 dna ? GO:0000786 ... P84233 N/A
    133348 4j8x:F (2.87) BS01 dna ? GO:0000786 ... P62799 N/A
    133349 4j8x:F (2.87) BS02 dna ? GO:0000786 ... P62799 N/A
    133350 4j8x:G (2.87) BS01 dna ? GO:0000786 ... P06897 N/A
    133351 4j8x:G (2.87) BS02 dna ? GO:0000786 ... P06897 N/A
    133352 4j8x:H (2.87) BS01 dna ? GO:0000786 ... P02281 N/A
    133353 4j8x:H (2.87) BS02 dna ? GO:0000786 ... P02281 N/A
    133354 4j8x:H (2.87) BS03 RU7 ? GO:0000786 ... P02281 N/A
    133355 4j90:A (3.24) BS01 ATP ? GO:0005515 ... O32080 23598340
    133356 4j90:B (3.24) BS01 ATP ? GO:0005515 ... O32080 23598340
    133357 4j90:B (3.24) BS02 ATP ? GO:0005515 ... O32080 23598340
    133358 4j91:A (2.93) BS01 ADP ? GO:0005515 ... O32080 23598340
    133359 4j91:B (2.93) BS01 ADP ? GO:0005515 ... O32080 23598340
    133360 4j91:C (2.93) BS01 ADP ? GO:0005515 ... O32080 23598340
    133361 4j91:D (2.93) BS01 ADP ? GO:0005515 ... O32080 23598340
    133362 4j9u:C (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    133363 4j9u:D (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    133364 4j9u:E (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    133365 4j9u:E (3.8) BS02 NAD ? GO:0000166 ... Q87KD2 23598339
    133366 4j9u:E (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    133367 4j9u:F (3.8) BS01 NAD ? GO:0000166 ... Q87KD2 23598339
    133368 4j9u:F (3.8) BS02 TBR ? GO:0000166 ... Q87KD2 23598339
    133369 4j9u:F (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    133370 4j9u:G (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    133371 4j9u:G (3.8) BS02 NAD ? GO:0000166 ... Q87KD2 23598339
    133372 4j9u:G (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    133373 4j9u:H (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    133374 4j9u:H (3.8) BS02 NAD ? GO:0000166 ... Q87KD2 23598339
    133375 4j9u:H (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    133376 4j9v:A (3.051) BS01 AGS ? GO:0000166 ... Q87KD2 23598339
    133377 4j9v:A (3.051) BS02 AGS ? GO:0000166 ... Q87KD2 23598339
    133378 4j9v:A (3.051) BS03 MG ? GO:0000166 ... Q87KD2 23598339
    133379 4j9v:B (3.051) BS01 MG ? GO:0000166 ... Q87KD2 23598339
    133380 4j9v:B (3.051) BS02 AGS ? GO:0000166 ... Q87KD2 23598339
    133381 4j9v:B (3.051) BS03 AGS ? GO:0000166 ... Q87KD2 23598339
    133382 4j9y:R (1.51) BS01 CA ? GO:0000086 ... P0DP29 23487779
    133383 4j9y:R (1.51) BS02 CA ? GO:0000086 ... P0DP29 23487779
    133384 4j9z:B (1.66) BS01 1KP ? GO:0005516 ... P70604 23487779
    133385 4j9z:R (1.66) BS01 1KP ? GO:0000086 ... P0DP29 23487779
    133386 4j9z:R (1.66) BS02 CA ? GO:0000086 ... P0DP29 23487779
    133387 4j9z:R (1.66) BS03 CA ? GO:0000086 ... P0DP29 23487779
    133388 4ja1:A (1.96) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    133389 4ja1:A (1.96) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    133390 4ja1:A (1.96) BS03 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133391 4ja1:A (1.96) BS04 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133392 4ja1:A (1.96) BS05 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133393 4ja1:A (1.96) BS06 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    133394 4ja1:B (1.96) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    133395 4ja1:B (1.96) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    133396 4ja1:B (1.96) BS03 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133397 4ja1:B (1.96) BS04 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133398 4ja1:B (1.96) BS05 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    133399 4ja1:B (1.96) BS06 NGH 3.4.24.17 GO:0004222 ... P08254 23660647 BindingDB: Ki=132nM, IC50=6500nM
    133400 4ja1:B (1.96) BS07 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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