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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    124401 4dux:A (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124402 4dux:A (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124403 4dux:B (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124404 4dux:B (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124405 4dux:B (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124406 4dux:B (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124407 4dux:C (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124408 4dux:C (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124409 4dux:C (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124410 4dux:C (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124411 4dux:D (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124412 4dux:D (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    124413 4dux:D (2.3) BS03 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124414 4dux:D (2.3) BS04 MG 3.2.1.23 GO:0000287 ... P00722 23486479
    124415 4duy:B (3.386) BS01 rna ? GO:0003735 ... P80371 N/A
    124416 4duy:B (3.386) BS02 MG ? GO:0003735 ... P80371 N/A
    124417 4duy:B (3.386) BS03 MG ? GO:0003735 ... P80371 N/A
    124418 4duy:C (3.386) BS01 rna ? GO:0003676 ... P80372 N/A
    124419 4duy:C (3.386) BS02 MG ? GO:0003676 ... P80372 N/A
    124420 4duy:D (3.386) BS01 rna ? GO:0003723 ... P80373 N/A
    124421 4duy:D (3.386) BS02 MG ? GO:0003723 ... P80373 N/A
    124422 4duy:D (3.386) BS03 MG ? GO:0003723 ... P80373 N/A
    124423 4duy:E (3.386) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124424 4duy:F (3.386) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124425 4duy:G (3.386) BS01 rna ? GO:0000028 ... P17291 N/A
    124426 4duy:G (3.386) BS02 MG ? GO:0000028 ... P17291 N/A
    124427 4duy:H (3.386) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124428 4duy:I (3.386) BS01 rna ? GO:0000049 ... P80374 N/A
    124429 4duy:J (3.386) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124430 4duy:J (3.386) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    124431 4duy:K (3.386) BS01 rna ? GO:0003735 ... P80376 N/A
    124432 4duy:K (3.386) BS02 MG ? GO:0003735 ... P80376 N/A
    124433 4duy:L (3.386) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124434 4duy:L (3.386) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    124435 4duy:M (3.386) BS01 rna ? GO:0000049 ... P80377 N/A
    124436 4duy:N (3.386) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124437 4duy:N (3.386) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124438 4duy:O (3.386) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124439 4duy:P (3.386) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124440 4duy:Q (3.386) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124441 4duy:Q (3.386) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    124442 4duy:R (3.386) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124443 4duy:S (3.386) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124444 4duy:T (3.386) BS01 rna ? GO:0003723 ... P80380 N/A
    124445 4duz:B (3.651) BS01 rna ? GO:0003735 ... P80371 N/A
    124446 4duz:C (3.651) BS01 rna ? GO:0003676 ... P80372 N/A
    124447 4duz:D (3.651) BS01 rna ? GO:0003723 ... P80373 N/A
    124448 4duz:D (3.651) BS02 MG ? GO:0003723 ... P80373 N/A
    124449 4duz:E (3.651) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124450 4duz:F (3.651) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124451 4duz:G (3.651) BS01 rna ? GO:0000028 ... P17291 N/A
    124452 4duz:H (3.651) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124453 4duz:I (3.651) BS01 rna ? GO:0000049 ... P80374 N/A
    124454 4duz:J (3.651) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124455 4duz:K (3.651) BS01 rna ? GO:0003735 ... P80376 N/A
    124456 4duz:L (3.651) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124457 4duz:L (3.651) BS02 SRY ? GO:0000049 ... Q5SHN3 N/A
    124458 4duz:L (3.651) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    124459 4duz:M (3.651) BS01 rna ? GO:0000049 ... P80377 N/A
    124460 4duz:N (3.651) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124461 4duz:N (3.651) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124462 4duz:O (3.651) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124463 4duz:P (3.651) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124464 4duz:Q (3.651) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124465 4duz:R (3.651) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124466 4duz:S (3.651) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124467 4duz:T (3.651) BS01 rna ? GO:0003723 ... P80380 N/A
    124468 4duz:T (3.651) BS02 MG ? GO:0003723 ... P80380 N/A
    124469 4dv0:B (3.853) BS01 rna ? GO:0003735 ... P80371 N/A
    124470 4dv0:B (3.853) BS02 MG ? GO:0003735 ... P80371 N/A
    124471 4dv0:B (3.853) BS03 MG ? GO:0003735 ... P80371 N/A
    124472 4dv0:C (3.853) BS01 rna ? GO:0003676 ... P80372 N/A
    124473 4dv0:D (3.853) BS01 rna ? GO:0003723 ... P80373 N/A
    124474 4dv0:D (3.853) BS02 MG ? GO:0003723 ... P80373 N/A
    124475 4dv0:E (3.853) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124476 4dv0:F (3.853) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124477 4dv0:G (3.853) BS01 rna ? GO:0000028 ... P17291 N/A
    124478 4dv0:H (3.853) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124479 4dv0:I (3.853) BS01 rna ? GO:0000049 ... P80374 N/A
    124480 4dv0:J (3.853) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124481 4dv0:K (3.853) BS01 rna ? GO:0003735 ... P80376 N/A
    124482 4dv0:L (3.853) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124483 4dv0:L (3.853) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    124484 4dv0:M (3.853) BS01 rna ? GO:0000049 ... P80377 N/A
    124485 4dv0:N (3.853) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124486 4dv0:N (3.853) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124487 4dv0:O (3.853) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124488 4dv0:P (3.853) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124489 4dv0:Q (3.853) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124490 4dv0:R (3.853) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124491 4dv0:S (3.853) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124492 4dv0:S (3.853) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    124493 4dv0:T (3.853) BS01 rna ? GO:0003723 ... P80380 N/A
    124494 4dv1:B (3.849) BS01 rna ? GO:0003735 ... P80371 N/A
    124495 4dv1:C (3.849) BS01 rna ? GO:0003676 ... P80372 N/A
    124496 4dv1:D (3.849) BS01 rna ? GO:0003723 ... P80373 N/A
    124497 4dv1:E (3.849) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124498 4dv1:F (3.849) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124499 4dv1:G (3.849) BS01 rna ? GO:0000028 ... P17291 N/A
    124500 4dv1:H (3.849) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124501 4dv1:I (3.849) BS01 rna ? GO:0000049 ... P80374 N/A
    124502 4dv1:J (3.849) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124503 4dv1:J (3.849) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    124504 4dv1:K (3.849) BS01 rna ? GO:0003735 ... P80376 N/A
    124505 4dv1:K (3.849) BS02 MG ? GO:0003735 ... P80376 N/A
    124506 4dv1:K (3.849) BS03 MG ? GO:0003735 ... P80376 N/A
    124507 4dv1:L (3.849) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124508 4dv1:L (3.849) BS02 SRY ? GO:0000049 ... Q5SHN3 N/A
    124509 4dv1:L (3.849) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    124510 4dv1:M (3.849) BS01 rna ? GO:0000049 ... P80377 N/A
    124511 4dv1:N (3.849) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124512 4dv1:N (3.849) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124513 4dv1:N (3.849) BS03 MG ? GO:0003735 ... P0DOY6 N/A
    124514 4dv1:O (3.849) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124515 4dv1:P (3.849) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124516 4dv1:Q (3.849) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124517 4dv1:R (3.849) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124518 4dv1:S (3.849) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124519 4dv1:S (3.849) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    124520 4dv1:T (3.849) BS01 rna ? GO:0003723 ... P80380 N/A
    124521 4dv1:T (3.849) BS02 MG ? GO:0003723 ... P80380 N/A
    124522 4dv2:B (3.646) BS01 rna ? GO:0003735 ... P80371 N/A
    124523 4dv2:B (3.646) BS02 MG ? GO:0003735 ... P80371 N/A
    124524 4dv2:C (3.646) BS01 rna ? GO:0003676 ... P80372 N/A
    124525 4dv2:C (3.646) BS02 MG ? GO:0003676 ... P80372 N/A
    124526 4dv2:C (3.646) BS03 MG ? GO:0003676 ... P80372 N/A
    124527 4dv2:D (3.646) BS01 rna ? GO:0003723 ... P80373 N/A
    124528 4dv2:D (3.646) BS02 MG ? GO:0003723 ... P80373 N/A
    124529 4dv2:E (3.646) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124530 4dv2:F (3.646) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124531 4dv2:G (3.646) BS01 rna ? GO:0000028 ... P17291 N/A
    124532 4dv2:H (3.646) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124533 4dv2:I (3.646) BS01 rna ? GO:0000049 ... P80374 N/A
    124534 4dv2:J (3.646) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124535 4dv2:K (3.646) BS01 rna ? GO:0003735 ... P80376 N/A
    124536 4dv2:K (3.646) BS02 MG ? GO:0003735 ... P80376 N/A
    124537 4dv2:L (3.646) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124538 4dv2:L (3.646) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    124539 4dv2:M (3.646) BS01 rna ? GO:0000049 ... P80377 N/A
    124540 4dv2:N (3.646) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124541 4dv2:N (3.646) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124542 4dv2:O (3.646) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124543 4dv2:P (3.646) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124544 4dv2:Q (3.646) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124545 4dv2:Q (3.646) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    124546 4dv2:R (3.646) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124547 4dv2:S (3.646) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124548 4dv2:T (3.646) BS01 rna ? GO:0003723 ... P80380 N/A
    124549 4dv2:T (3.646) BS02 MG ? GO:0003723 ... P80380 N/A
    124550 4dv3:B (3.547) BS01 rna ? GO:0003735 ... P80371 N/A
    124551 4dv3:C (3.547) BS01 rna ? GO:0003676 ... P80372 N/A
    124552 4dv3:D (3.547) BS01 rna ? GO:0003723 ... P80373 N/A
    124553 4dv3:E (3.547) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124554 4dv3:F (3.547) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124555 4dv3:G (3.547) BS01 rna ? GO:0000028 ... P17291 N/A
    124556 4dv3:H (3.547) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124557 4dv3:I (3.547) BS01 rna ? GO:0000049 ... P80374 N/A
    124558 4dv3:J (3.547) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124559 4dv3:J (3.547) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    124560 4dv3:K (3.547) BS01 rna ? GO:0003735 ... P80376 N/A
    124561 4dv3:K (3.547) BS02 MG ? GO:0003735 ... P80376 N/A
    124562 4dv3:L (3.547) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124563 4dv3:L (3.547) BS02 SRY ? GO:0000049 ... Q5SHN3 N/A
    124564 4dv3:M (3.547) BS01 rna ? GO:0000049 ... P80377 N/A
    124565 4dv3:N (3.547) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124566 4dv3:N (3.547) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124567 4dv3:O (3.547) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124568 4dv3:P (3.547) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124569 4dv3:Q (3.547) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124570 4dv3:Q (3.547) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    124571 4dv3:R (3.547) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    124572 4dv3:S (3.547) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    124573 4dv3:S (3.547) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    124574 4dv3:T (3.547) BS01 rna ? GO:0003723 ... P80380 N/A
    124575 4dv3:T (3.547) BS02 MG ? GO:0003723 ... P80380 N/A
    124576 4dv4:B (3.651) BS01 rna ? GO:0003735 ... P80371 N/A
    124577 4dv4:B (3.651) BS02 MG ? GO:0003735 ... P80371 N/A
    124578 4dv4:C (3.651) BS01 rna ? GO:0003676 ... P80372 N/A
    124579 4dv4:C (3.651) BS02 MG ? GO:0003676 ... P80372 N/A
    124580 4dv4:D (3.651) BS01 rna ? GO:0003723 ... P80373 N/A
    124581 4dv4:D (3.651) BS02 ZN ? GO:0003723 ... P80373 N/A
    124582 4dv4:D (3.651) BS03 MG ? GO:0003723 ... P80373 N/A
    124583 4dv4:D (3.651) BS04 MG ? GO:0003723 ... P80373 N/A
    124584 4dv4:E (3.651) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    124585 4dv4:F (3.651) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    124586 4dv4:G (3.651) BS01 rna ? GO:0000028 ... P17291 N/A
    124587 4dv4:H (3.651) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    124588 4dv4:I (3.651) BS01 rna ? GO:0000049 ... P80374 N/A
    124589 4dv4:J (3.651) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    124590 4dv4:K (3.651) BS01 rna ? GO:0003735 ... P80376 N/A
    124591 4dv4:K (3.651) BS02 MG ? GO:0003735 ... P80376 N/A
    124592 4dv4:L (3.651) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    124593 4dv4:L (3.651) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    124594 4dv4:M (3.651) BS01 rna ? GO:0000049 ... P80377 N/A
    124595 4dv4:N (3.651) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    124596 4dv4:N (3.651) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    124597 4dv4:O (3.651) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    124598 4dv4:P (3.651) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    124599 4dv4:Q (3.651) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    124600 4dv4:Q (3.651) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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