Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    123201 4d5l:e (9.0) BS01 rna ? GO:0003735 ... G1T8A2 25601755
    123202 4d5l:f (9.0) BS01 rna ? GO:0003723 ... G1SK22 25601755
    123203 4d5l:g (9.0) BS01 rna ? GO:0001891 ... G1SJB4 25601755
    123204 4d5y:A (9.0) BS01 rna ? GO:0002181 ... G1TT27 25601755
    123205 4d5y:B (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123206 4d5y:C (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123207 4d5y:C (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123208 4d5y:D (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123209 4d5y:D (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123210 4d5y:E (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123211 4d5y:G (9.0) BS01 rna N/A GO:0042254 ... N/A 25601755
    123212 4d5y:G (9.0) BS02 rna N/A GO:0042254 ... N/A 25601755
    123213 4d5y:H (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123214 4d5y:I (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123215 4d5y:I (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123216 4d5y:J (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123217 4d5y:J (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123218 4d5y:L (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123219 4d5y:L (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123220 4d5y:M (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123221 4d5y:N (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123222 4d5y:N (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123223 4d5y:O (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123224 4d5y:P (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123225 4d5y:P (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123226 4d5y:Q (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123227 4d5y:R (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123228 4d5y:S (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123229 4d5y:S (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123230 4d5y:T (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123231 4d5y:T (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123232 4d5y:U (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123233 4d5y:V (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123234 4d5y:X (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123235 4d5y:X (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123236 4d5y:Y (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123237 4d5y:Y (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    123238 4d5y:Z (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123239 4d5y:a (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123240 4d5y:b (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123241 4d5y:c (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123242 4d5y:d (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123243 4d5y:e (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123244 4d5y:f (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123245 4d5y:g (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123246 4d5y:h (9.0) BS01 rna N/A GO:0000463 ... N/A 25601755
    123247 4d5y:h (9.0) BS02 rna N/A GO:0000463 ... N/A 25601755
    123248 4d5y:i (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123249 4d5y:j (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123250 4d5y:j (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123251 4d5y:k (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123252 4d5y:l (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123253 4d5y:l (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123254 4d5y:m (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123255 4d5y:o (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123256 4d5y:p (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123257 4d5y:t (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123258 4d5y:u (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123259 4d61:A (9.0) BS01 rna ? GO:0000028 ... G1TLT8 25601755
    123260 4d61:B (9.0) BS01 rna ? GO:0003735 ... G1SS70 25601755
    123261 4d61:C (9.0) BS01 rna ? GO:0003723 ... G1SWM1 25601755
    123262 4d61:C (9.0) BS02 rna ? GO:0003723 ... G1SWM1 25601755
    123263 4d61:D (9.0) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 25601755
    123264 4d61:D (9.0) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 25601755
    123265 4d61:E (9.0) BS01 rna ? GO:0003723 ... G1TK17 25601755
    123266 4d61:F (9.0) BS01 rna ? GO:0000028 ... G1TFM5 25601755
    123267 4d61:F (9.0) BS02 rna ? GO:0000028 ... G1TFM5 25601755
    123268 4d61:G (9.0) BS01 rna ? GO:0000082 ... G1TM55 25601755
    123269 4d61:H (9.0) BS01 rna ? GO:0003735 ... G1SVB0 25601755
    123270 4d61:I (9.0) BS01 rna ? GO:0000462 ... G1TJW1 25601755
    123271 4d61:J (9.0) BS01 rna ? GO:0003723 ... B7NZS8 25601755
    123272 4d61:K (9.0) BS01 rna ? GO:0003723 ... G1T168 25601755
    123273 4d61:L (9.0) BS01 rna ? GO:0003735 ... G1TRM4 25601755
    123274 4d61:M (9.0) BS01 rna ? GO:0003735 ... G1SFR8 25601755
    123275 4d61:N (9.0) BS01 rna ? GO:0003735 ... G1SP51 25601755
    123276 4d61:O (9.0) BS01 rna ? GO:0000028 ... G1T1F0 25601755
    123277 4d61:P (9.0) BS01 rna ? GO:0000028 ... G1U0Q2 25601755
    123278 4d61:Q (9.0) BS01 rna ? GO:0000462 ... G1SGX4 25601755
    123279 4d61:Q (9.0) BS02 rna ? GO:0000462 ... G1SGX4 25601755
    123280 4d61:R (9.0) BS01 rna ? GO:0003735 ... G1TU13 25601755
    123281 4d61:S (9.0) BS01 rna ? GO:0003676 ... G1TPG3 25601755
    123282 4d61:T (9.0) BS01 rna ? GO:0000028 ... G1TN62 25601755
    123283 4d61:U (9.0) BS01 rna ? GO:0003723 ... G1SIZ2 25601755
    123284 4d61:W (9.0) BS01 rna ? GO:0003735 ... G1TG89 25601755
    123285 4d61:X (9.0) BS01 rna ? GO:0003735 ... G1SZ47 25601755
    123286 4d61:Y (9.0) BS01 rna ? GO:0003735 ... G1TS40 25601755
    123287 4d61:Z (9.0) BS01 rna ? GO:0003735 ... G1TDB3 25601755
    123288 4d61:a (9.0) BS01 rna ? GO:0003729 ... G1TFE8 25601755
    123289 4d61:b (9.0) BS01 rna ? GO:0000028 ... G1TZ76 25601755
    123290 4d61:c (9.0) BS01 rna ? GO:0000028 ... G1TIB4 25601755
    123291 4d61:d (9.0) BS01 rna ? GO:0003735 ... G1U7M4 25601755
    123292 4d61:e (9.0) BS01 rna ? GO:0003735 ... G1T8A2 25601755
    123293 4d61:e (9.0) BS02 rna ? GO:0003735 ... G1T8A2 25601755
    123294 4d61:f (9.0) BS01 rna ? GO:0003723 ... G1SK22 25601755
    123295 4d61:g (9.0) BS01 rna ? GO:0001891 ... G1SJB4 25601755
    123296 4d61:h (9.0) BS01 rna ? GO:0000184 ... P62495 25601755
    123297 4d67:A (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123298 4d67:B (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123299 4d67:C (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123300 4d67:C (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123301 4d67:D (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123302 4d67:D (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123303 4d67:E (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123304 4d67:G (9.0) BS01 rna N/A GO:0042254 ... N/A 25601755
    123305 4d67:G (9.0) BS02 rna N/A GO:0042254 ... N/A 25601755
    123306 4d67:H (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123307 4d67:I (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123308 4d67:I (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123309 4d67:J (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123310 4d67:J (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123311 4d67:L (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123312 4d67:L (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123313 4d67:M (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123314 4d67:N (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123315 4d67:N (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123316 4d67:O (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123317 4d67:P (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123318 4d67:P (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123319 4d67:Q (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123320 4d67:R (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123321 4d67:S (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123322 4d67:S (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123323 4d67:T (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123324 4d67:T (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123325 4d67:U (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123326 4d67:V (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123327 4d67:X (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123328 4d67:X (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123329 4d67:Y (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123330 4d67:Y (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    123331 4d67:Z (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123332 4d67:a (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123333 4d67:b (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123334 4d67:c (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123335 4d67:d (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123336 4d67:e (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123337 4d67:f (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123338 4d67:g (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123339 4d67:h (9.0) BS01 rna N/A GO:0000463 ... N/A 25601755
    123340 4d67:h (9.0) BS02 rna N/A GO:0000463 ... N/A 25601755
    123341 4d67:i (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123342 4d67:j (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123343 4d67:j (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123344 4d67:k (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123345 4d67:l (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123346 4d67:l (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    123347 4d67:m (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123348 4d67:o (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123349 4d67:p (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123350 4d67:t (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    123351 4d67:u (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    123352 4d6t:B (3.57) BS01 peptide ? GO:0004222 ... P23004 25564664
    123353 4d6t:C (3.57) BS01 HEM ? GO:0005739 ... P00157 25564664
    123354 4d6t:C (3.57) BS02 HEM ? GO:0005739 ... P00157 25564664
    123355 4d6t:C (3.57) BS03 4X9 ? GO:0005739 ... P00157 25564664
    123356 4d6t:N (3.57) BS01 peptide ? GO:0005739 ... P31800 25564664
    123357 4d6t:O (3.57) BS01 peptide ? GO:0004222 ... P23004 25564664
    123358 4d6t:P (3.57) BS01 HEM ? GO:0005739 ... P00157 25564664
    123359 4d6t:P (3.57) BS02 HEM ? GO:0005739 ... P00157 25564664
    123360 4d6t:P (3.57) BS03 4X9 ? GO:0005739 ... P00157 25564664
    123361 4d6t:R (3.57) BS01 FES 7.1.1.8 GO:0005739 ... P13272 25564664
    123362 4d6u:A (4.09) BS01 peptide ? GO:0005739 ... P31800 25564664
    123363 4d6u:B (4.09) BS01 peptide ? GO:0004222 ... P23004 25564664
    123364 4d6u:C (4.09) BS01 HEM ? GO:0005739 ... P00157 25564664
    123365 4d6u:C (4.09) BS02 HEM ? GO:0005739 ... P00157 25564664
    123366 4d6u:C (4.09) BS03 G8U ? GO:0005739 ... P00157 25564664
    123367 4d6u:D (4.09) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 25564664
    123368 4d6u:N (4.09) BS01 peptide ? GO:0005739 ... P31800 25564664
    123369 4d6u:O (4.09) BS01 peptide ? GO:0004222 ... P23004 25564664
    123370 4d6u:P (4.09) BS01 HEM ? GO:0005739 ... P00157 25564664
    123371 4d6u:P (4.09) BS02 HEM ? GO:0005739 ... P00157 25564664
    123372 4d6u:P (4.09) BS03 G8U ? GO:0005739 ... P00157 25564664
    123373 4d6u:Q (4.09) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 25564664
    123374 4d6u:R (4.09) BS01 FES 7.1.1.8 GO:0005739 ... P13272 25564664
    123375 4d6z:A (1.93) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436
    123376 4d6z:A (1.93) BS02 PK9 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436 BindingDB: Kd=105000nM, IC50=75000nM
    123377 4d75:A (2.25) BS01 PK9 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436 MOAD: Kd=105uM
    BindingDB: Kd=105000nM, IC50=75000nM
    123378 4d75:A (2.25) BS02 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436
    123379 4d78:A (2.8) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436
    123380 4d78:A (2.8) BS02 J9K 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436 BindingDB: Kd=900nM, IC50=520nM
    123381 4d79:A (1.768) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 25897750
    123382 4d79:B (1.768) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 25897750
    123383 4d79:B (1.768) BS02 ATP 6.1.-.- GO:0005515 ... Q46927 25897750
    123384 4d79:C (1.768) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 25897750
    123385 4d79:D (1.768) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 25897750
    123386 4d7a:A (1.801) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 25897750
    123387 4d7a:B (1.801) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 25897750
    123388 4d7a:D (1.801) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 25897750
    123389 4d7b:A (1.15) BS01 TCW ? GO:0005179 ... P02766 26902880 MOAD: Kd=21nM
    PDBbind: -logKd/Ki=7.68, Kd=21nM
    BindingDB: Kd=56nM
    123390 4d7b:B (1.15) BS01 TCW ? GO:0005179 ... P02766 26902880 MOAD: Kd=21nM
    PDBbind: -logKd/Ki=7.68, Kd=21nM
    BindingDB: Kd=56nM
    123391 4d7d:A (2.76) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436
    123392 4d7d:A (2.76) BS02 PKT 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 26371436 BindingDB: IC50=210nM, Kd=500nM
    123393 4d7h:A (2.02) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26091171
    123394 4d7h:A (2.02) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26091171
    123395 4d7h:A (2.02) BS03 M46 1.14.14.47 GO:0004517 ... O34453 26091171
    123396 4d7h:A (2.02) BS04 POL 1.14.14.47 GO:0004517 ... O34453 26091171
    123397 4d7i:A (1.96) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26091171
    123398 4d7i:A (1.96) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26091171
    123399 4d7i:A (1.96) BS03 0GD 1.14.14.47 GO:0004517 ... O34453 26091171
    123400 4d7j:A (1.55) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26091171
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417