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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    120801 4bqr:A (2.05) BS02 IBH 1.3.1.9 GO:0004318 ... P9WGR1 24107081 MOAD: ic50=0.2uM
    120802 4bqr:B (2.05) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 24107081
    120803 4bqr:B (2.05) BS02 IBH 1.3.1.9 GO:0004318 ... P9WGR1 24107081 MOAD: ic50=0.2uM
    120804 4bqr:C (2.05) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 24107081
    120805 4bqr:C (2.05) BS02 IBH 1.3.1.9 GO:0004318 ... P9WGR1 24107081 MOAD: ic50=0.2uM
    120806 4bqr:D (2.05) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 24107081
    120807 4bqr:D (2.05) BS02 IBH 1.3.1.9 GO:0004318 ... P9WGR1 24107081 MOAD: ic50=0.2uM
    120808 4bqs:A (2.15) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 23889343
    120809 4bqs:A (2.15) BS02 K2Q 2.7.1.71 GO:0000287 ... P9WPY3 23889343 MOAD: Ki=62uM
    PDBbind: -logKd/Ki=4.21, Ki=62uM
    120810 4bqs:B (2.15) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 23889343
    120811 4bqs:B (2.15) BS02 K2Q 2.7.1.71 GO:0000287 ... P9WPY3 23889343 MOAD: Ki=62uM
    120812 4bqs:C (2.15) BS01 ADP 2.7.1.71 GO:0000287 ... P9WPY3 23889343
    120813 4bqs:C (2.15) BS02 K2Q 2.7.1.71 GO:0000287 ... P9WPY3 23889343 MOAD: Ki=62uM
    120814 4bqt:A (2.88) BS01 C5E ? GO:0004888 ... Q8WSF8 22553201 PDBbind: -logKd/Ki=5.79, Kd=1640nM
    120815 4bqt:B (2.88) BS01 C5E ? GO:0004888 ... Q8WSF8 22553201 PDBbind: -logKd/Ki=5.79, Kd=1640nM
    120816 4bqt:B (2.88) BS02 CO ? GO:0004888 ... Q8WSF8 22553201
    120817 4bqt:C (2.88) BS01 C5E ? GO:0004888 ... Q8WSF8 22553201
    120818 4bqt:D (2.88) BS01 C5E ? GO:0004888 ... Q8WSF8 22553201
    120819 4bqt:E (2.88) BS01 C5E ? GO:0004888 ... Q8WSF8 22553201
    120820 4bqu:A (2.36) BS01 CLR ? GO:0005576 ... M1MR49 29167574
    120821 4bqu:B (2.36) BS01 CLR ? GO:0005576 ... M1MR49 29167574
    120822 4br5:A (1.75) BS01 ANP 3.6.1.5 GO:0005524 ... Q5RJP4 23830739
    120823 4brb:A (2.55) BS01 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120824 4brb:A (2.55) BS02 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120825 4brb:A (2.55) BS03 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120826 4brb:B (2.55) BS01 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120827 4brb:B (2.55) BS02 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120828 4brb:B (2.55) BS03 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120829 4brb:C (2.55) BS01 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120830 4brb:C (2.55) BS02 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120831 4brb:D (2.55) BS01 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120832 4brb:D (2.55) BS02 ZN 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120833 4brb:D (2.55) BS03 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120834 4brb:D (2.55) BS04 78N 2.7.1.107 GO:0004143 ... P0ABN1 25055873
    120835 4brr:B (2.44) BS01 79M 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120836 4brr:B (2.44) BS02 79M 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120837 4brr:D (2.44) BS01 79M 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120838 4brr:D (2.44) BS02 79M 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120839 4brr:D (2.44) BS03 ZN 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120840 4brr:D (2.44) BS04 79M 2.7.1.107 GO:0004143 ... P0ABN1 N/A
    120841 4bs3:B (2.301) BS01 peptide ? GO:0005179 ... P01317 N/A
    120842 4bsb:A (2.35) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    120843 4bsc:A (2.55) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    120844 4bsd:A (2.4) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    120845 4bse:A (2.55) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    120846 4bsf:A (2.76) BS01 SIA ? GO:0019031 ... M4YV75 23787694
    120847 4bsh:A (2.25) BS01 SIA ? GO:0019031 ... Q6GYW3 23787694
    120848 4bsi:A (2.62) BS01 GAL ? GO:0019031 ... G0KQM4 23787694
    120849 4bsi:A (2.62) BS02 SIA ? GO:0019031 ... G0KQM4 23787694
    120850 4bt9:A (1.9) BS01 peptide 1.14.11.2 GO:0004656 ... P13674 24207127
    120851 4bta:A (2.95) BS01 peptide 1.14.11.2 GO:0004656 ... P13674 24207127
    120852 4btb:A (1.899) BS01 peptide 1.14.11.2 GO:0004656 ... P13674 24207127
    120853 4btl:A (2.5) BS01 5GZ 3.1.1.7 GO:0001919 ... P21836 23984975 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    BindingDB: IC50=2500nM
    120854 4btl:A (2.5) BS02 5GZ 3.1.1.7 GO:0001919 ... P21836 23984975 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    BindingDB: IC50=2500nM
    120855 4btl:B (2.5) BS01 5GZ 3.1.1.7 GO:0001919 ... P21836 23984975 MOAD: ic50=2.5uM
    BindingDB: IC50=2500nM
    120856 4btl:B (2.5) BS02 5GZ 3.1.1.7 GO:0001919 ... P21836 23984975 MOAD: ic50=2.5uM
    BindingDB: IC50=2500nM
    120857 4bts:A0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    120858 4bts:A1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    120859 4bts:A2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    120860 4bts:A3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    120861 4bts:A4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    120862 4bts:A5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    120863 4bts:A5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    120864 4bts:A6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    120865 4bts:A6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    120866 4bts:A7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    120867 4bts:A8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    120868 4bts:A9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    120869 4bts:A9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    120870 4bts:AB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    120871 4bts:AC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    120872 4bts:AD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    120873 4bts:AE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    120874 4bts:AG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    120875 4bts:AH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    120876 4bts:AI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    120877 4bts:AJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    120878 4bts:AK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    120879 4bts:AL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    120880 4bts:AM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    120881 4bts:AN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    120882 4bts:AN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    120883 4bts:AO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    120884 4bts:AP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    120885 4bts:AQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    120886 4bts:AR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    120887 4bts:AS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    120888 4bts:AT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    120889 4bts:AU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    120890 4bts:AV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    120891 4bts:AW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    120892 4bts:AW (3.703) BS02 rna ? GO:0003723 ... E6PBS2 23851459
    120893 4bts:AX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    120894 4bts:AY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    120895 4bts:AZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    120896 4bts:B0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    120897 4bts:B1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    120898 4bts:B2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    120899 4bts:B3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    120900 4bts:B4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    120901 4bts:B5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    120902 4bts:B5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    120903 4bts:B6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    120904 4bts:B6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    120905 4bts:B7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    120906 4bts:B8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    120907 4bts:B9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    120908 4bts:B9 (3.703) BS02 rna ? GO:0003677 ... E6PBU9 23851459
    120909 4bts:B9 (3.703) BS03 ZN ? GO:0003677 ... E6PBU9 23851459
    120910 4bts:BB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    120911 4bts:BC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    120912 4bts:BD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    120913 4bts:BD (3.703) BS02 rna ? GO:0003723 ... E6PBS7 23851459
    120914 4bts:BE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    120915 4bts:BG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    120916 4bts:BH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    120917 4bts:BI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    120918 4bts:BJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    120919 4bts:BK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    120920 4bts:BL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    120921 4bts:BM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    120922 4bts:BN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    120923 4bts:BN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    120924 4bts:BO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    120925 4bts:BP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    120926 4bts:BQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    120927 4bts:BR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    120928 4bts:BS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    120929 4bts:BT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    120930 4bts:BU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    120931 4bts:BV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    120932 4bts:BW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    120933 4bts:BX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    120934 4bts:BY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    120935 4bts:BZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    120936 4bts:C0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    120937 4bts:C1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    120938 4bts:C2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    120939 4bts:C3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    120940 4bts:C4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    120941 4bts:C5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    120942 4bts:C5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    120943 4bts:C6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    120944 4bts:C6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    120945 4bts:C7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    120946 4bts:C8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    120947 4bts:C9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    120948 4bts:C9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    120949 4bts:CB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    120950 4bts:CC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    120951 4bts:CD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    120952 4bts:CE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    120953 4bts:CG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    120954 4bts:CH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    120955 4bts:CI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    120956 4bts:CJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    120957 4bts:CK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    120958 4bts:CL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    120959 4bts:CM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    120960 4bts:CN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    120961 4bts:CN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    120962 4bts:CO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    120963 4bts:CP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    120964 4bts:CQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    120965 4bts:CR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    120966 4bts:CS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    120967 4bts:CT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    120968 4bts:CT (3.703) BS02 rna ? GO:0000028 ... E6PBT7 23851459
    120969 4bts:CU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    120970 4bts:CV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    120971 4bts:CW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    120972 4bts:CX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    120973 4bts:CY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    120974 4bts:CZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    120975 4bts:D0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    120976 4bts:D1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    120977 4bts:D2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    120978 4bts:D3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    120979 4bts:D4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    120980 4bts:D5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    120981 4bts:D5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    120982 4bts:D6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    120983 4bts:D6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    120984 4bts:D7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    120985 4bts:D8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    120986 4bts:D9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    120987 4bts:D9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    120988 4bts:DB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    120989 4bts:DC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    120990 4bts:DD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    120991 4bts:DE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    120992 4bts:DG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    120993 4bts:DH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    120994 4bts:DI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    120995 4bts:DJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    120996 4bts:DK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    120997 4bts:DL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    120998 4bts:DM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    120999 4bts:DN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    121000 4bts:DN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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