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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119601 4b2o:C (1.64) BS03 FE2 3.1.4.16 GO:0004113 ... O31775 24163345
    119602 4b2o:D (1.64) BS01 PO4 3.1.4.16 GO:0004113 ... O31775 24163345
    119603 4b2o:D (1.64) BS02 FE2 3.1.4.16 GO:0004113 ... O31775 24163345
    119604 4b2o:D (1.64) BS03 FE2 3.1.4.16 GO:0004113 ... O31775 24163345
    119605 4b2q:A (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119606 4b2q:B (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119607 4b2q:C (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119608 4b2q:D (37.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 22864911
    119609 4b2q:F (37.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 22864911
    119610 4b2q:a (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119611 4b2q:b (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119612 4b2q:c (37.0) BS01 ATP ? GO:0005524 ... P07251 22864911
    119613 4b2q:d (37.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 22864911
    119614 4b2q:f (37.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 22864911
    119615 4b2y:A (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119616 4b2y:A (1.9) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119617 4b2y:B (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119618 4b2y:B (1.9) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119619 4b2y:C (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119620 4b2y:C (1.9) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119621 4b2y:C (1.9) BS03 CA 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119622 4b2y:D (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119623 4b2y:D (1.9) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT6 23545640
    119624 4b2z:A (1.95) BS01 P5S ? GO:0001786 ... Q02201 23934110
    119625 4b2z:B (1.95) BS01 P5S ? GO:0001786 ... Q02201 23934110
    119626 4b31:A (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119627 4b31:A (2.25) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119628 4b31:B (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119629 4b31:B (2.25) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119630 4b31:C (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119631 4b31:C (2.25) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119632 4b31:D (2.25) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119633 4b31:D (2.25) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT7 23545640
    119634 4b3e:A (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119635 4b3e:A (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119636 4b3e:A (2.15) BS03 CO3 1.15.1.1 GO:0000302 ... P00441 22984565
    119637 4b3e:B (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119638 4b3e:B (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119639 4b3e:B (2.15) BS03 CO3 1.15.1.1 GO:0000302 ... P00441 22984565
    119640 4b3e:C (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119641 4b3e:C (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119642 4b3e:D (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119643 4b3e:D (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119644 4b3e:D (2.15) BS03 CO3 1.15.1.1 GO:0000302 ... P00441 22984565
    119645 4b3e:E (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119646 4b3e:E (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119647 4b3e:E (2.15) BS03 CO3 1.15.1.1 GO:0000302 ... P00441 22984565
    119648 4b3e:F (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119649 4b3e:F (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119650 4b3e:G (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119651 4b3e:G (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119652 4b3e:H (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119653 4b3e:H (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119654 4b3e:I (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119655 4b3e:I (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119656 4b3e:J (2.15) BS01 CU 1.15.1.1 GO:0000302 ... P00441 22984565
    119657 4b3e:J (2.15) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 22984565
    119658 4b3i:A (2.63) BS01 COA 1.1.1.35 GO:0000166 ... O53872 23496842
    119659 4b3i:A (2.63) BS02 ADP 1.1.1.35 GO:0000166 ... O53872 23496842
    119660 4b3i:B (2.63) BS01 COA 1.1.1.35 GO:0000166 ... O53872 23496842
    119661 4b3i:B (2.63) BS02 ADP 1.1.1.35 GO:0000166 ... O53872 23496842
    119662 4b3i:C (2.63) BS01 ADP 2.3.1.- GO:0005886 ... O53871 23496842
    119663 4b3j:A (2.5) BS01 COA 1.1.1.35 GO:0000166 ... O53872 23496842
    119664 4b3j:B (2.5) BS01 COA 1.1.1.35 GO:0000166 ... O53872 23496842
    119665 4b3j:C (2.5) BS01 COA 2.3.1.- GO:0005886 ... O53871 23496842
    119666 4b3j:D (2.5) BS01 COA 2.3.1.- GO:0005886 ... O53871 23496842
    119667 4b3m:B (2.9) BS01 rna ? GO:0003735 ... P80371 24473108
    119668 4b3m:B (2.9) BS02 MG ? GO:0003735 ... P80371 24473108
    119669 4b3m:C (2.9) BS01 rna ? GO:0003676 ... P80372 24473108
    119670 4b3m:D (2.9) BS01 rna ? GO:0003723 ... P80373 24473108
    119671 4b3m:D (2.9) BS02 MG ? GO:0003723 ... P80373 24473108
    119672 4b3m:E (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    119673 4b3m:E (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 24473108
    119674 4b3m:F (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    119675 4b3m:G (2.9) BS01 rna ? GO:0000028 ... P17291 24473108
    119676 4b3m:H (2.9) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    119677 4b3m:H (2.9) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    119678 4b3m:H (2.9) BS03 MG ? GO:0003735 ... P0DOY9 24473108
    119679 4b3m:H (2.9) BS04 MG ? GO:0003735 ... P0DOY9 24473108
    119680 4b3m:I (2.9) BS01 rna ? GO:0000049 ... P80374 24473108
    119681 4b3m:I (2.9) BS02 MG ? GO:0000049 ... P80374 24473108
    119682 4b3m:J (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    119683 4b3m:K (2.9) BS01 rna ? GO:0003735 ... P80376 24473108
    119684 4b3m:K (2.9) BS02 MG ? GO:0003735 ... P80376 24473108
    119685 4b3m:L (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    119686 4b3m:L (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 24473108
    119687 4b3m:M (2.9) BS01 rna ? GO:0000049 ... P80377 24473108
    119688 4b3m:M (2.9) BS02 MG ? GO:0000049 ... P80377 24473108
    119689 4b3m:N (2.9) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    119690 4b3m:N (2.9) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    119691 4b3m:N (2.9) BS03 MG ? GO:0003735 ... P0DOY6 24473108
    119692 4b3m:O (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    119693 4b3m:P (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    119694 4b3m:Q (2.9) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    119695 4b3m:Q (2.9) BS02 MG ? GO:0003735 ... P0DOY7 24473108
    119696 4b3m:R (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    119697 4b3m:S (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    119698 4b3m:T (2.9) BS01 rna ? GO:0003723 ... P80380 24473108
    119699 4b3m:T (2.9) BS02 MG ? GO:0003723 ... P80380 24473108
    119700 4b3n:A (3.3) BS01 GLC ?
    2.3.2.27    		 GO:0005515 ... P0AEX9
    Q0PF16    		 23091002
    119701 4b3n:A (3.3) BS02 GLC ?
    2.3.2.27    		 GO:0005515 ... P0AEX9
    Q0PF16    		 23091002
    119702 4b3n:B (3.3) BS01 GLC ?
    2.3.2.27    		 GO:0005515 ... P0AEX9
    Q0PF16    		 23091002
    119703 4b3n:B (3.3) BS02 GLC ?
    2.3.2.27    		 GO:0005515 ... P0AEX9
    Q0PF16    		 23091002
    119704 4b3r:B (3.0) BS01 rna ? GO:0003735 ... P80371 24473108
    119705 4b3r:B (3.0) BS02 MG ? GO:0003735 ... P80371 24473108
    119706 4b3r:B (3.0) BS03 MG ? GO:0003735 ... P80371 24473108
    119707 4b3r:C (3.0) BS01 rna ? GO:0003676 ... P80372 24473108
    119708 4b3r:D (3.0) BS01 rna ? GO:0003723 ... P80373 24473108
    119709 4b3r:D (3.0) BS02 MG ? GO:0003723 ... P80373 24473108
    119710 4b3r:E (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    119711 4b3r:F (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    119712 4b3r:F (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 24473108
    119713 4b3r:G (3.0) BS01 rna ? GO:0000028 ... P17291 24473108
    119714 4b3r:H (3.0) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    119715 4b3r:H (3.0) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    119716 4b3r:I (3.0) BS01 rna ? GO:0000049 ... P80374 24473108
    119717 4b3r:J (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    119718 4b3r:J (3.0) BS02 MG ? GO:0000049 ... Q5SHN7 24473108
    119719 4b3r:K (3.0) BS01 rna ? GO:0003735 ... P80376 24473108
    119720 4b3r:K (3.0) BS02 MG ? GO:0003735 ... P80376 24473108
    119721 4b3r:L (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    119722 4b3r:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 24473108
    119723 4b3r:M (3.0) BS01 rna ? GO:0000049 ... P80377 24473108
    119724 4b3r:M (3.0) BS02 MG ? GO:0000049 ... P80377 24473108
    119725 4b3r:N (3.0) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    119726 4b3r:N (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    119727 4b3r:O (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    119728 4b3r:P (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    119729 4b3r:Q (3.0) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    119730 4b3r:Q (3.0) BS02 MG ? GO:0003735 ... P0DOY7 24473108
    119731 4b3r:R (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    119732 4b3r:S (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    119733 4b3r:T (3.0) BS01 rna ? GO:0003723 ... P80380 24473108
    119734 4b3s:B (3.15) BS01 rna ? GO:0003735 ... P80371 24473108
    119735 4b3s:C (3.15) BS01 rna ? GO:0003676 ... P80372 24473108
    119736 4b3s:D (3.15) BS01 rna ? GO:0003723 ... P80373 24473108
    119737 4b3s:E (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    119738 4b3s:F (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    119739 4b3s:G (3.15) BS01 rna ? GO:0000028 ... P17291 24473108
    119740 4b3s:H (3.15) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    119741 4b3s:H (3.15) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    119742 4b3s:I (3.15) BS01 rna ? GO:0000049 ... P80374 24473108
    119743 4b3s:J (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    119744 4b3s:K (3.15) BS01 rna ? GO:0003735 ... P80376 24473108
    119745 4b3s:K (3.15) BS02 MG ? GO:0003735 ... P80376 24473108
    119746 4b3s:L (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    119747 4b3s:M (3.15) BS01 rna ? GO:0000049 ... P80377 24473108
    119748 4b3s:M (3.15) BS02 MG ? GO:0000049 ... P80377 24473108
    119749 4b3s:N (3.15) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    119750 4b3s:N (3.15) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    119751 4b3s:O (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    119752 4b3s:P (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    119753 4b3s:Q (3.15) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    119754 4b3s:R (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    119755 4b3s:S (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    119756 4b3s:T (3.15) BS01 rna ? GO:0003723 ... P80380 24473108
    119757 4b3s:T (3.15) BS02 MG ? GO:0003723 ... P80380 24473108
    119758 4b3t:B (3.0) BS01 rna ? GO:0003735 ... P80371 24473108
    119759 4b3t:C (3.0) BS01 rna ? GO:0003676 ... P80372 24473108
    119760 4b3t:D (3.0) BS01 rna ? GO:0003723 ... P80373 24473108
    119761 4b3t:D (3.0) BS02 MG ? GO:0003723 ... P80373 24473108
    119762 4b3t:E (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    119763 4b3t:F (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    119764 4b3t:G (3.0) BS01 rna ? GO:0000028 ... P17291 24473108
    119765 4b3t:G (3.0) BS02 MG ? GO:0000028 ... P17291 24473108
    119766 4b3t:H (3.0) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    119767 4b3t:H (3.0) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    119768 4b3t:I (3.0) BS01 rna ? GO:0000049 ... P80374 24473108
    119769 4b3t:J (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    119770 4b3t:K (3.0) BS01 rna ? GO:0003735 ... P80376 24473108
    119771 4b3t:L (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    119772 4b3t:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 24473108
    119773 4b3t:L (3.0) BS03 MG ? GO:0000049 ... Q5SHN3 24473108
    119774 4b3t:L (3.0) BS04 MG ? GO:0000049 ... Q5SHN3 24473108
    119775 4b3t:M (3.0) BS01 rna ? GO:0000049 ... P80377 24473108
    119776 4b3t:M (3.0) BS02 MG ? GO:0000049 ... P80377 24473108
    119777 4b3t:N (3.0) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    119778 4b3t:N (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    119779 4b3t:O (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    119780 4b3t:P (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    119781 4b3t:Q (3.0) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    119782 4b3t:R (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    119783 4b3t:S (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    119784 4b3t:T (3.0) BS01 rna ? GO:0003723 ... P80380 24473108
    119785 4b3t:T (3.0) BS02 MG ? GO:0003723 ... P80380 24473108
    119786 4b3v:A (1.98) BS01 CA ? GO:0016020 ... P08563 23292515
    119787 4b3v:B (1.98) BS01 CA ? GO:0016020 ... P08563 23292515
    119788 4b3v:C (1.98) BS01 CA ? GO:0016020 ... P08563 23292515
    119789 4b3w:A (2.8) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119790 4b3w:A (2.8) BS02 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119791 4b3w:A (2.8) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119792 4b3w:B (2.8) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119793 4b3w:B (2.8) BS02 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119794 4b3w:B (2.8) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    119795 4b40:A (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    119796 4b40:A (1.93) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    119797 4b40:B (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    119798 4b40:B (1.93) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    119799 4b40:C (1.93) BS01 HDD 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    119800 4b40:C (1.93) BS02 CA 1.11.1.6 GO:0004096 ... R4GRT8 23545640
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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