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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    115001 3wkd:A (2.48) BS01 MG 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 24656800
    115002 3wkd:A (2.48) BS02 S0K 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 24656800 MOAD: ic50=171uM
    PDBbind: -logKd/Ki=3.77, IC50=171uM
    BindingDB: IC50=171000nM
    115003 3wke:A (2.75) BS01 MG 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 24656800
    115004 3wke:A (2.75) BS02 AUB 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 24656800 PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.5nM, Ki=1.5nM
    115005 3wkj:A (2.8) BS01 dna ? GO:0000786 ... P68431 24699735
    115006 3wkj:A (2.8) BS02 dna ? GO:0000786 ... P68431 24699735
    115007 3wkj:B (2.8) BS01 dna ? GO:0000781 ... P62805 24699735
    115008 3wkj:B (2.8) BS02 dna ? GO:0000781 ... P62805 24699735
    115009 3wkj:C (2.8) BS01 dna ? GO:0000786 ... P04908 24699735
    115010 3wkj:C (2.8) BS02 dna ? GO:0000786 ... P04908 24699735
    115011 3wkj:D (2.8) BS01 dna ? GO:0000781 ... Q96A08 24699735
    115012 3wkj:D (2.8) BS02 dna ? GO:0000781 ... Q96A08 24699735
    115013 3wkj:E (2.8) BS01 dna ? GO:0000786 ... P68431 24699735
    115014 3wkj:E (2.8) BS02 dna ? GO:0000786 ... P68431 24699735
    115015 3wkj:F (2.8) BS01 dna ? GO:0000781 ... P62805 24699735
    115016 3wkj:F (2.8) BS02 dna ? GO:0000781 ... P62805 24699735
    115017 3wkj:G (2.8) BS01 dna ? GO:0000786 ... P04908 24699735
    115018 3wkj:G (2.8) BS02 dna ? GO:0000786 ... P04908 24699735
    115019 3wkj:H (2.8) BS01 dna ? GO:0000781 ... Q96A08 24699735
    115020 3wkj:H (2.8) BS02 dna ? GO:0000781 ... Q96A08 24699735
    115021 3wkt:A (4.3) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 24550278
    115022 3wkt:A (4.3) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 24550278
    115023 3wkt:A (4.3) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 24550278
    115024 3wkt:B (4.3) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 24550278
    115025 3wkt:B (4.3) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 24550278
    115026 3wkt:B (4.3) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 24550278
    115027 3wkt:C (4.3) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 24550278
    115028 3wkt:D (4.3) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 24550278
    115029 3wky:A (1.801) BS01 CUO ? GO:0005576 ... G5EKM4 24720693
    115030 3wky:B (1.801) BS01 CUO ? GO:0005576 ... G5EKM4 24720693
    115031 3wky:B (1.801) BS02 MG ? GO:0005576 ... G5EKM4 24720693
    115032 3wlh:A (1.65) BS01 XYP 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115033 3wlh:A (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115034 3wlh:A (1.65) BS03 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115035 3wlj:A (1.67) BS01 XYP 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115036 3wlj:A (1.67) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115037 3wlj:A (1.67) BS03 3DO 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115038 3wlk:X (1.8) BS01 XYP 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115039 3wlk:X (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115040 3wll:A (1.8) BS01 XYP 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115041 3wlo:A (1.55) BS01 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115042 3wlo:A (1.55) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115043 3wlp:A (1.57) BS01 MGL 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115044 3wlp:A (1.57) BS02 GS1 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    115045 3wlx:A (2.51) BS01 PLG 4.1.2.48 GO:0003824 ... P75823 N/A
    115046 3wlx:B (2.51) BS01 PLG 4.1.2.48 GO:0003824 ... P75823 N/A
    115047 3wmb:A (2.7) BS01 NF1 3.2.1.52 GO:0000272 ... Q06GJ0 25155420 PDBbind: -logKd/Ki=5.37, Ki=4.28uM
    115048 3wmc:A (2.095) BS01 NF6 3.2.1.52 GO:0000272 ... Q06GJ0 25155420 MOAD: Ki=0.31uM
    PDBbind: -logKd/Ki=6.51, Ki=0.31uM
    115049 3wmg:A (2.4) BS01 peptide ? GO:0005524 ... M1VAN7 24591620
    115050 3wmg:A (2.4) BS02 DMU ? GO:0005524 ... M1VAN7 24591620
    115051 3wmg:A (2.4) BS03 DMU ? GO:0005524 ... M1VAN7 24591620
    115052 3wmh:A (2.1) BS01 JJA ? GO:0003677 ... P37231 N/A
    115053 3wmh:B (2.1) BS01 JJA ? GO:0003677 ... P37231 N/A
    115054 3wmm:0 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    115055 3wmm:0 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115056 3wmm:0 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    115057 3wmm:1 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115058 3wmm:1 (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115059 3wmm:1 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115060 3wmm:1 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115061 3wmm:1 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115062 3wmm:1 (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115063 3wmm:2 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115064 3wmm:2 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115065 3wmm:2 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115066 3wmm:3 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115067 3wmm:3 (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115068 3wmm:3 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115069 3wmm:3 (3.008) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    115070 3wmm:3 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115071 3wmm:3 (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115072 3wmm:4 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115073 3wmm:4 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115074 3wmm:4 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115075 3wmm:5 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115076 3wmm:5 (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    115077 3wmm:5 (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    115078 3wmm:5 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115079 3wmm:5 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115080 3wmm:6 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    115081 3wmm:6 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115082 3wmm:6 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    115083 3wmm:6 (3.008) BS04 CA ? GO:0005515 ... D2Z0P1 24670637
    115084 3wmm:7 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115085 3wmm:7 (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    115086 3wmm:7 (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    115087 3wmm:7 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115088 3wmm:7 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115089 3wmm:7 (3.008) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    115090 3wmm:8 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115091 3wmm:8 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115092 3wmm:8 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115093 3wmm:9 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115094 3wmm:9 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    115095 3wmm:9 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    115096 3wmm:9 (3.008) BS04 CA ? GO:0005515 ... D2Z0P2 24670637
    115097 3wmm:9 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115098 3wmm:9 (3.008) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    115099 3wmm:A (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115100 3wmm:A (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    115101 3wmm:A (3.008) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    115102 3wmm:A (3.008) BS04 CA ? GO:0005515 ... D2Z0P2 24670637
    115103 3wmm:A (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115104 3wmm:A (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115105 3wmm:B (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115106 3wmm:B (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115107 3wmm:B (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115108 3wmm:C (3.008) BS01 HEM ? GO:0005506 ... D2Z0P5 24670637
    115109 3wmm:C (3.008) BS02 HEM ? GO:0005506 ... D2Z0P5 24670637
    115110 3wmm:C (3.008) BS03 HEM ? GO:0005506 ... D2Z0P5 24670637
    115111 3wmm:C (3.008) BS04 HEM ? GO:0005506 ... D2Z0P5 24670637
    115112 3wmm:C (3.008) BS05 CA ? GO:0005506 ... D2Z0P5 24670637
    115113 3wmm:D (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115114 3wmm:D (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    115115 3wmm:D (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    115116 3wmm:D (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115117 3wmm:D (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    115118 3wmm:E (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    115119 3wmm:E (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115120 3wmm:E (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    115121 3wmm:F (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115122 3wmm:F (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115123 3wmm:F (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115124 3wmm:F (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115125 3wmm:F (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115126 3wmm:G (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115127 3wmm:G (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115128 3wmm:G (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115129 3wmm:I (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115130 3wmm:I (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115131 3wmm:I (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115132 3wmm:I (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115133 3wmm:I (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115134 3wmm:I (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115135 3wmm:J (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115136 3wmm:J (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115137 3wmm:J (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115138 3wmm:K (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115139 3wmm:K (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115140 3wmm:K (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115141 3wmm:K (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115142 3wmm:K (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115143 3wmm:K (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115144 3wmm:L (3.008) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    115145 3wmm:L (3.008) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    115146 3wmm:L (3.008) BS03 UQ8 ? GO:0005515 ... D2Z0P3 24670637
    115147 3wmm:L (3.008) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    115148 3wmm:L (3.008) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    115149 3wmm:L (3.008) BS06 BPH ? GO:0005515 ... D2Z0P3 24670637
    115150 3wmm:L (3.008) BS07 FE ? GO:0005515 ... D2Z0P3 24670637
    115151 3wmm:M (3.008) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    115152 3wmm:M (3.008) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    115153 3wmm:M (3.008) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    115154 3wmm:M (3.008) BS04 BCL ? GO:0005515 ... A8ASG6 24670637
    115155 3wmm:M (3.008) BS05 BPH ? GO:0005515 ... A8ASG6 24670637
    115156 3wmm:M (3.008) BS06 FE ? GO:0005515 ... A8ASG6 24670637
    115157 3wmm:M (3.008) BS07 MQ8 ? GO:0005515 ... A8ASG6 24670637
    115158 3wmm:M (3.008) BS08 CRT ? GO:0005515 ... A8ASG6 24670637
    115159 3wmm:M (3.008) BS09 PGW ? GO:0005515 ... A8ASG6 24670637
    115160 3wmm:N (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115161 3wmm:N (3.008) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    115162 3wmm:O (3.008) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    115163 3wmm:O (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    115164 3wmm:O (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115165 3wmm:O (3.008) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    115166 3wmm:P (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115167 3wmm:P (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115168 3wmm:P (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115169 3wmm:Q (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115170 3wmm:Q (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115171 3wmm:Q (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115172 3wmm:Q (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115173 3wmm:Q (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115174 3wmm:R (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115175 3wmm:R (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115176 3wmm:R (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115177 3wmm:S (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115178 3wmm:S (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115179 3wmm:S (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115180 3wmm:S (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115181 3wmm:S (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115182 3wmm:S (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    115183 3wmm:T (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115184 3wmm:T (3.008) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    115185 3wmm:U (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115186 3wmm:U (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115187 3wmm:U (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115188 3wmm:U (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115189 3wmm:U (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115190 3wmm:V (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115191 3wmm:V (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115192 3wmm:V (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    115193 3wmm:W (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    115194 3wmm:W (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    115195 3wmm:W (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    115196 3wmm:W (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    115197 3wmm:W (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    115198 3wmm:X (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    115199 3wmm:X (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115200 3wmm:X (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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