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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    114201 3w71:B (1.68) BS01 W7A 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114202 3w71:B (1.68) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114203 3w72:A (1.55) BS01 W7B 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114204 3w72:A (1.55) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114205 3w72:B (1.55) BS01 W7B 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114206 3w72:B (1.55) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114207 3w73:A (1.78) BS01 W73 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114208 3w73:A (1.78) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114209 3w73:B (1.78) BS01 W73 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114210 3w73:B (1.78) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114211 3w74:A (1.9) BS01 W74 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114212 3w74:A (1.9) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114213 3w74:B (1.9) BS01 W74 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114214 3w74:B (1.9) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114215 3w75:A (1.47) BS01 W75 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114216 3w75:A (1.47) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114217 3w75:B (1.47) BS01 W75 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114218 3w75:B (1.47) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114219 3w76:A (1.58) BS01 W76 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114220 3w76:A (1.58) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114221 3w76:B (1.58) BS01 W76 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114222 3w76:B (1.58) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114223 3w7c:A (1.75) BS01 W7C 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114224 3w7c:A (1.75) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114225 3w7c:B (1.75) BS01 W7C 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114226 3w7c:B (1.75) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114227 3w7d:A (1.52) BS01 W7D 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114228 3w7d:A (1.52) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114229 3w7d:B (1.52) BS01 W7D 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114230 3w7d:B (1.52) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114231 3w7e:A (1.56) BS01 W7F 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114232 3w7e:A (1.56) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114233 3w7e:B (1.56) BS01 W7F 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114234 3w7e:B (1.56) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114235 3w7g:A (1.55) BS01 W7G 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114236 3w7g:A (1.55) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114237 3w7g:B (1.55) BS01 W7G 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114238 3w7g:B (1.55) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114239 3w7h:A (1.67) BS01 W7H 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114240 3w7h:A (1.67) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114241 3w7h:B (1.67) BS01 W7H 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114242 3w7h:B (1.67) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114243 3w7i:A (1.69) BS01 W7I 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114244 3w7i:A (1.69) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114245 3w7i:B (1.69) BS01 W7I 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114246 3w7i:B (1.69) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114247 3w7j:A (1.58) BS01 W7J 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114248 3w7j:A (1.58) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114249 3w7j:B (1.58) BS01 W7J 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114250 3w7j:B (1.58) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114251 3w7k:A (1.61) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114252 3w7k:A (1.61) BS02 W7K 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114253 3w7k:B (1.61) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114254 3w7k:B (1.61) BS02 W7K 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114255 3w7l:A (1.88) BS01 W7L 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114256 3w7l:A (1.88) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114257 3w7l:B (1.88) BS01 W7L 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114258 3w7l:B (1.88) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114259 3w7m:A (2.4) BS01 W7M 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114260 3w7m:A (2.4) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114261 3w7m:B (2.4) BS01 W7M 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114262 3w7m:B (2.4) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114263 3w7n:A (2.39) BS01 W7N 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114264 3w7n:A (2.39) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114265 3w7n:B (2.39) BS01 W7N 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114266 3w7n:B (2.39) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114267 3w7o:A (1.68) BS01 W7O 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114268 3w7o:A (1.68) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114269 3w7o:B (1.68) BS01 W7O 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114270 3w7o:B (1.68) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114271 3w7p:A (1.7) BS01 W7P 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114272 3w7p:A (1.7) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114273 3w7p:B (1.7) BS01 W7P 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114274 3w7p:B (1.7) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114275 3w7q:A (1.83) BS01 W7Q 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114276 3w7q:A (1.83) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114277 3w7q:B (1.83) BS01 W7Q 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114278 3w7q:B (1.83) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114279 3w7r:A (1.68) BS01 W7A 1.3.5.2 GO:0004151 ... Q02127 N/A
    114280 3w7r:A (1.68) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 N/A
    114281 3w7s:A (1.9) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114282 3w7s:A (1.9) BS02 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114283 3w7s:A (1.9) BS03 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114284 3w7s:A (1.9) BS04 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114285 3w7s:A (1.9) BS05 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114286 3w7s:A (1.9) BS06 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114287 3w7s:B (1.9) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114288 3w7s:B (1.9) BS02 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114289 3w7s:B (1.9) BS03 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114290 3w7s:B (1.9) BS04 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114291 3w7s:B (1.9) BS05 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114292 3w7s:B (1.9) BS06 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114293 3w7s:B (1.9) BS07 GLC 3.2.1.- GO:0004555 ... P42592 18586271
    114294 3w7t:A (1.5) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114295 3w7t:A (1.5) BS02 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114296 3w7t:A (1.5) BS03 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114297 3w7t:A (1.5) BS04 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114298 3w7t:B (1.5) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114299 3w7t:B (1.5) BS02 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114300 3w7t:B (1.5) BS03 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114301 3w7t:B (1.5) BS04 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114302 3w7t:B (1.5) BS05 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    114303 3w7u:A (1.99) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114304 3w7u:A (1.99) BS02 GLA 3.2.1.- GO:0004555 ... P42592 18586271
    114305 3w7u:B (1.99) BS01 CA 3.2.1.- GO:0004555 ... P42592 18586271
    114306 3w7u:B (1.99) BS02 GLA 3.2.1.- GO:0004555 ... P42592 18586271
    114307 3w7w:A (2.0) BS01 GLA 3.2.1.- GO:0004555 ... P42592 23826932
    114308 3w7w:A (2.0) BS02 GLC 3.2.1.- GO:0004555 ... P42592 23826932
    114309 3w7w:A (2.0) BS03 CA 3.2.1.- GO:0004555 ... P42592 23826932
    114310 3w7w:B (2.0) BS01 GLA 3.2.1.- GO:0004555 ... P42592 23826932
    114311 3w7w:B (2.0) BS02 GLC 3.2.1.- GO:0004555 ... P42592 23826932
    114312 3w7w:B (2.0) BS03 CA 3.2.1.- GO:0004555 ... P42592 23826932
    114313 3w7x:A (2.7) BS01 GLA 3.2.1.- GO:0004555 ... P42592 23826932
    114314 3w7x:A (2.7) BS02 CA 3.2.1.- GO:0004555 ... P42592 23826932
    114315 3w7x:B (2.7) BS01 GLA 3.2.1.- GO:0004555 ... P42592 23826932
    114316 3w7x:B (2.7) BS02 CA 3.2.1.- GO:0004555 ... P42592 23826932
    114317 3w7y:B (0.92) BS01 peptide ? GO:0005179 ... P01308 N/A
    114318 3w7y:D (0.92) BS01 peptide ? GO:0005179 ... P01308 N/A
    114319 3w7z:B (1.15) BS01 peptide ? GO:0005179 ... P01308 N/A
    114320 3w7z:D (1.15) BS01 peptide ? GO:0005179 ... P01308 N/A
    114321 3w80:B (1.4) BS01 peptide ? GO:0005179 ... P01308 N/A
    114322 3w80:D (1.4) BS01 peptide ? GO:0005179 ... P01308 N/A
    114323 3w80:F (1.4) BS01 peptide ? GO:0005179 ... P01308 N/A
    114324 3w80:H (1.4) BS01 peptide ? GO:0005179 ... P01308 N/A
    114325 3w83:A (2.8) BS01 W83 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114326 3w83:A (2.8) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114327 3w83:B (2.8) BS01 W83 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114328 3w83:B (2.8) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114329 3w84:A (1.93) BS01 W8Z 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114330 3w84:A (1.93) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114331 3w84:B (1.93) BS01 W8Z 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114332 3w84:B (1.93) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114333 3w85:A (2.0) BS01 W85 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114334 3w85:A (2.0) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114335 3w85:B (2.0) BS01 W85 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114336 3w85:B (2.0) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114337 3w86:A (1.5) BS01 W86 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114338 3w86:A (1.5) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114339 3w86:B (1.5) BS01 W86 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114340 3w86:B (1.5) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114341 3w87:A (1.43) BS01 W87 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114342 3w87:A (1.43) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114343 3w87:B (1.43) BS01 W87 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114344 3w87:B (1.43) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114345 3w88:A (1.4) BS01 W88 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114346 3w88:A (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114347 3w88:B (1.4) BS01 W88 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114348 3w88:B (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 N/A
    114349 3w8k:A (1.5) BS01 ZN 3.5.2.6 GO:0008800 ... Q51578 24777102
    114350 3w8k:A (1.5) BS02 ZN 3.5.2.6 GO:0008800 ... Q51578 24777102
    114351 3w8k:A (1.5) BS03 ZN 3.5.2.6 GO:0008800 ... Q51578 24777102
    114352 3w8n:A (2.2) BS01 C5P 2.7.4.25 GO:0004127 ... Q5SL35 N/A
    114353 3w8r:A (2.5) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    114354 3w8r:A (2.5) BS02 ACP 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    114355 3w8r:B (2.5) BS01 CTN 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    114356 3w8r:B (2.5) BS02 ACP 2.7.1.48 GO:0004849 ... Q5SKR5 28955773
    114357 3w96:A (3.0) BS01 dna ? GO:0000786 ... P68431 24251097
    114358 3w96:A (3.0) BS02 dna ? GO:0000786 ... P68431 24251097
    114359 3w96:B (3.0) BS01 dna ? GO:0000781 ... P62805 24251097
    114360 3w96:B (3.0) BS02 dna ? GO:0000781 ... P62805 24251097
    114361 3w96:C (3.0) BS01 dna ? GO:0000786 ... P04908 24251097
    114362 3w96:C (3.0) BS02 dna ? GO:0000786 ... P04908 24251097
    114363 3w96:D (3.0) BS01 dna ? GO:0000786 ... P06899 24251097
    114364 3w96:D (3.0) BS02 dna ? GO:0000786 ... P06899 24251097
    114365 3w96:E (3.0) BS01 dna ? GO:0000786 ... P68431 24251097
    114366 3w96:E (3.0) BS02 dna ? GO:0000786 ... P68431 24251097
    114367 3w96:F (3.0) BS01 dna ? GO:0000781 ... P62805 24251097
    114368 3w96:F (3.0) BS02 dna ? GO:0000781 ... P62805 24251097
    114369 3w96:G (3.0) BS01 dna ? GO:0000786 ... P04908 24251097
    114370 3w96:G (3.0) BS02 dna ? GO:0000786 ... P04908 24251097
    114371 3w96:H (3.0) BS01 dna ? GO:0000786 ... P06899 24251097
    114372 3w96:H (3.0) BS02 dna ? GO:0000786 ... P06899 24251097
    114373 3w97:A (3.2) BS01 dna ? GO:0000786 ... P68431 24251097
    114374 3w97:A (3.2) BS02 dna ? GO:0000786 ... P68431 24251097
    114375 3w97:B (3.2) BS01 dna ? GO:0000781 ... P62805 24251097
    114376 3w97:B (3.2) BS02 dna ? GO:0000781 ... P62805 24251097
    114377 3w97:C (3.2) BS01 dna ? GO:0000786 ... P04908 24251097
    114378 3w97:C (3.2) BS02 dna ? GO:0000786 ... P04908 24251097
    114379 3w97:D (3.2) BS01 dna ? GO:0000786 ... P06899 24251097
    114380 3w97:D (3.2) BS02 dna ? GO:0000786 ... P06899 24251097
    114381 3w97:E (3.2) BS01 dna ? GO:0000786 ... P68431 24251097
    114382 3w97:E (3.2) BS02 dna ? GO:0000786 ... P68431 24251097
    114383 3w97:F (3.2) BS01 dna ? GO:0000781 ... P62805 24251097
    114384 3w97:F (3.2) BS02 dna ? GO:0000781 ... P62805 24251097
    114385 3w97:G (3.2) BS01 dna ? GO:0000786 ... P04908 24251097
    114386 3w97:G (3.2) BS02 dna ? GO:0000786 ... P04908 24251097
    114387 3w97:H (3.2) BS01 dna ? GO:0000786 ... P06899 24251097
    114388 3w97:H (3.2) BS02 dna ? GO:0000786 ... P06899 24251097
    114389 3w98:A (3.42) BS01 dna ? GO:0000786 ... P68431 24251097
    114390 3w98:A (3.42) BS02 dna ? GO:0000786 ... P68431 24251097
    114391 3w98:B (3.42) BS01 dna ? GO:0000781 ... P62805 24251097
    114392 3w98:B (3.42) BS02 dna ? GO:0000781 ... P62805 24251097
    114393 3w98:C (3.42) BS01 dna ? GO:0000786 ... P04908 24251097
    114394 3w98:C (3.42) BS02 dna ? GO:0000786 ... P04908 24251097
    114395 3w98:D (3.42) BS01 dna ? GO:0000786 ... P06899 24251097
    114396 3w98:D (3.42) BS02 dna ? GO:0000786 ... P06899 24251097
    114397 3w98:E (3.42) BS01 dna ? GO:0000786 ... P68431 24251097
    114398 3w98:E (3.42) BS02 dna ? GO:0000786 ... P68431 24251097
    114399 3w98:F (3.42) BS01 dna ? GO:0000781 ... P62805 24251097
    114400 3w98:F (3.42) BS02 dna ? GO:0000781 ... P62805 24251097
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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