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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    112201 3usk:C (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    112202 3usk:D (4.5) BS01 LEU ? GO:0005886 ... O67854 22245965
    112203 3usk:D (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    112204 3usk:D (4.5) BS03 NA ? GO:0005886 ... O67854 22245965
    112205 3usl:A (2.71) BS01 NA ? GO:0005886 ... O67854 22245965
    112206 3usl:A (2.71) BS02 NA ? GO:0005886 ... O67854 22245965
    112207 3usl:A (2.71) BS03 MSE ? GO:0005886 ... O67854 22245965
    112208 3usl:A (2.71) BS04 PC ? GO:0005886 ... O67854 22245965
    112209 3usm:A (3.008) BS01 NA ? GO:0005886 ... O67854 22245965
    112210 3usm:A (3.008) BS02 NA ? GO:0005886 ... O67854 22245965
    112211 3usm:A (3.008) BS03 MSE ? GO:0005886 ... O67854 22245965
    112212 3usm:A (3.008) BS04 PC ? GO:0005886 ... O67854 22245965
    112213 3usn:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9827994
    112214 3usn:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9827994
    112215 3usn:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9827994
    112216 3usn:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9827994
    112217 3usn:A (-1.00) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9827994
    112218 3usn:A (-1.00) BS06 ATT 3.4.24.17 GO:0004222 ... P08254 9827994 PDBbind: -logKd/Ki=6.15, Ki=710nM
    BindingDB: Ki=710nM
    112219 3uso:A (4.5) BS01 NA ? GO:0005886 ... O67854 22245965
    112220 3uso:A (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    112221 3uso:A (4.5) BS03 MSE ? GO:0005886 ... O67854 22245965
    112222 3uso:B (4.5) BS01 NA ? GO:0005886 ... O67854 22245965
    112223 3uso:B (4.5) BS02 NA ? GO:0005886 ... O67854 22245965
    112224 3uso:B (4.5) BS03 MSE ? GO:0005886 ... O67854 22245965
    112225 3usp:A (2.1) BS01 NA ? GO:0005886 ... O67854 22245965
    112226 3usp:A (2.1) BS02 NA ? GO:0005886 ... O67854 22245965
    112227 3usp:A (2.1) BS03 LEU ? GO:0005886 ... O67854 22245965
    112228 3usp:A (2.1) BS04 05L ? GO:0005886 ... O67854 22245965
    112229 3usp:A (2.1) BS05 05L ? GO:0005886 ... O67854 22245965
    112230 3usp:A (2.1) BS06 05L ? GO:0005886 ... O67854 22245965
    112231 3usp:A (2.1) BS07 05L ? GO:0005886 ... O67854 22245965
    112232 3usp:A (2.1) BS08 05L ? GO:0005886 ... O67854 22245965
    112233 3usp:A (2.1) BS09 05L ? GO:0005886 ... O67854 22245965
    112234 3usx:B (2.28) BS01 MYR ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=5.02, Kd=9.53uM
    112235 3ut1:A (2.05) BS01 CO ? GO:0005634 ... Q96JM7 N/A
    112236 3ut2:A (1.549) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 22822072
    112237 3ut2:B (1.549) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 22822072
    112238 3ut3:B (2.42) BS01 EMJ ? GO:0001525 ... P05121 N/A
    112239 3ut5:A (2.73) BS01 GTP ? GO:0000226 ... D0VWZ0 22868758
    112240 3ut5:A (2.73) BS02 LOC ? GO:0000226 ... D0VWZ0 22868758
    112241 3ut5:B (2.73) BS01 peptide ? GO:0000226 ... D0VWY9 22868758
    112242 3ut5:B (2.73) BS02 GDP ? GO:0000226 ... D0VWY9 22868758
    112243 3ut5:B (2.73) BS03 LOC ? GO:0000226 ... D0VWY9 22868758
    112244 3ut5:C (2.73) BS01 peptide ? GO:0000226 ... D0VWZ0 22868758
    112245 3ut5:C (2.73) BS02 GTP ? GO:0000226 ... D0VWZ0 22868758
    112246 3ut5:D (2.73) BS01 GDP ? GO:0000226 ... D0VWY9 22868758
    112247 3ut5:D (2.73) BS02 LOC ? GO:0000226 ... D0VWY9 22868758
    112248 3ut6:A (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112249 3ut6:A (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112250 3ut6:B (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112251 3ut6:B (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112252 3ut6:B (1.895) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112253 3ut6:C (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112254 3ut6:C (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112255 3ut6:C (1.895) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    112256 3ut9:A (2.2) BS01 dna ? GO:0000786 ... P84233 22453276
    112257 3ut9:A (2.2) BS02 dna ? GO:0000786 ... P84233 22453276
    112258 3ut9:B (2.2) BS01 dna ? GO:0000786 ... P62799 22453276
    112259 3ut9:B (2.2) BS02 dna ? GO:0000786 ... P62799 22453276
    112260 3ut9:C (2.2) BS01 dna ? GO:0000786 ... P06897 22453276
    112261 3ut9:C (2.2) BS02 dna ? GO:0000786 ... P06897 22453276
    112262 3ut9:D (2.2) BS01 dna ? GO:0000786 ... P02281 22453276
    112263 3ut9:D (2.2) BS02 dna ? GO:0000786 ... P02281 22453276
    112264 3ut9:E (2.2) BS01 dna ? GO:0000786 ... P84233 22453276
    112265 3ut9:E (2.2) BS02 dna ? GO:0000786 ... P84233 22453276
    112266 3ut9:F (2.2) BS01 dna ? GO:0000786 ... P62799 22453276
    112267 3ut9:F (2.2) BS02 dna ? GO:0000786 ... P62799 22453276
    112268 3ut9:G (2.2) BS01 dna ? GO:0000786 ... P06897 22453276
    112269 3ut9:G (2.2) BS02 dna ? GO:0000786 ... P06897 22453276
    112270 3ut9:H (2.2) BS01 dna ? GO:0000786 ... P02281 22453276
    112271 3ut9:H (2.2) BS02 dna ? GO:0000786 ... P02281 22453276
    112272 3uta:A (2.07) BS01 dna ? GO:0000786 ... P84233 22453276
    112273 3uta:A (2.07) BS02 dna ? GO:0000786 ... P84233 22453276
    112274 3uta:B (2.07) BS01 dna ? GO:0000786 ... P62799 22453276
    112275 3uta:B (2.07) BS02 dna ? GO:0000786 ... P62799 22453276
    112276 3uta:C (2.07) BS01 dna ? GO:0000786 ... P06897 22453276
    112277 3uta:C (2.07) BS02 dna ? GO:0000786 ... P06897 22453276
    112278 3uta:D (2.07) BS01 dna ? GO:0000786 ... P02281 22453276
    112279 3uta:D (2.07) BS02 dna ? GO:0000786 ... P02281 22453276
    112280 3uta:E (2.07) BS01 dna ? GO:0000786 ... P84233 22453276
    112281 3uta:E (2.07) BS02 dna ? GO:0000786 ... P84233 22453276
    112282 3uta:F (2.07) BS01 dna ? GO:0000786 ... P62799 22453276
    112283 3uta:F (2.07) BS02 dna ? GO:0000786 ... P62799 22453276
    112284 3uta:G (2.07) BS01 dna ? GO:0000786 ... P06897 22453276
    112285 3uta:G (2.07) BS02 dna ? GO:0000786 ... P06897 22453276
    112286 3uta:H (2.07) BS01 dna ? GO:0000786 ... P02281 22453276
    112287 3uta:H (2.07) BS02 dna ? GO:0000786 ... P02281 22453276
    112288 3utb:A (2.2) BS01 dna ? GO:0000786 ... P84233 22453276
    112289 3utb:A (2.2) BS02 dna ? GO:0000786 ... P84233 22453276
    112290 3utb:B (2.2) BS01 dna ? GO:0000786 ... P62799 22453276
    112291 3utb:B (2.2) BS02 dna ? GO:0000786 ... P62799 22453276
    112292 3utb:C (2.2) BS01 dna ? GO:0000786 ... P06897 22453276
    112293 3utb:C (2.2) BS02 dna ? GO:0000786 ... P06897 22453276
    112294 3utb:D (2.2) BS01 dna ? GO:0000786 ... P02281 22453276
    112295 3utb:D (2.2) BS02 dna ? GO:0000786 ... P02281 22453276
    112296 3utb:E (2.2) BS01 dna ? GO:0000786 ... P84233 22453276
    112297 3utb:E (2.2) BS02 dna ? GO:0000786 ... P84233 22453276
    112298 3utb:F (2.2) BS01 dna ? GO:0000786 ... P62799 22453276
    112299 3utb:F (2.2) BS02 dna ? GO:0000786 ... P62799 22453276
    112300 3utb:G (2.2) BS01 dna ? GO:0000786 ... P06897 22453276
    112301 3utb:G (2.2) BS02 dna ? GO:0000786 ... P06897 22453276
    112302 3utb:H (2.2) BS01 dna ? GO:0000786 ... P02281 22453276
    112303 3utb:H (2.2) BS02 dna ? GO:0000786 ... P02281 22453276
    112304 3utc:A (1.9) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112305 3utc:A (1.9) BS02 0JX 1.17.7.4 GO:0005829 ... P62623 22948824
    112306 3utc:B (1.9) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112307 3utc:B (1.9) BS02 0JX 1.17.7.4 GO:0005829 ... P62623 22948824
    112308 3utd:A (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22948824
    112309 3utd:A (1.7) BS02 0CJ 1.17.7.4 GO:0005829 ... P62623 22948824
    112310 3utd:B (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22948824
    112311 3utd:B (1.7) BS02 0CJ 1.17.7.4 GO:0005829 ... P62623 22948824
    112312 3utv:A (2.06) BS01 RET ? GO:0005216 ... P02945 22566663
    112313 3utw:A (2.4) BS01 RET ? GO:0005216 ... P02945 22566663
    112314 3utx:A (2.47) BS01 RET ? GO:0005216 ... P02945 22566663
    112315 3utx:B (2.47) BS01 RET ? GO:0005216 ... P02945 22566663
    112316 3uty:A (2.37) BS01 RET ? GO:0005216 ... P02945 22566663
    112317 3uty:B (2.37) BS01 RET ? GO:0005216 ... P02945 22566663
    112318 3uu0:A (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112319 3uu0:A (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112320 3uu0:B (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112321 3uu0:B (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112322 3uu0:C (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112323 3uu0:C (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112324 3uu0:D (2.7) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112325 3uu0:D (2.7) BS02 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    112326 3uu1:A (1.82) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112327 3uu1:A (1.82) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112328 3uu1:A (1.82) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112329 3uu1:A (1.82) BS04 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292 PDBbind: -logKd/Ki=5.20, Ki=6.3uM
    112330 3uu1:B (1.82) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112331 3uu1:B (1.82) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112332 3uu1:B (1.82) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112333 3uu1:B (1.82) BS04 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112334 3uu1:B (1.82) BS05 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112335 3uu1:C (1.82) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112336 3uu1:C (1.82) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112337 3uu1:C (1.82) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112338 3uu1:C (1.82) BS04 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112339 3uu1:C (1.82) BS05 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112340 3uu1:D (1.82) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112341 3uu1:D (1.82) BS02 14B 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112342 3uu1:D (1.82) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112343 3uu1:D (1.82) BS04 MG 2.4.2.18 GO:0000162 ... P9WFX5 23363292
    112344 3uu9:A (2.2) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112345 3uu9:A (2.2) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112346 3uu9:A (2.2) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112347 3uu9:A (2.2) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112348 3uu9:A (2.2) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112349 3uu9:A (2.2) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112350 3uu9:A (2.2) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112351 3uu9:A (2.2) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112352 3uu9:A (2.2) BS09 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112353 3uu9:A (2.2) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112354 3uu9:B (2.2) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112355 3uu9:B (2.2) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112356 3uu9:B (2.2) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112357 3uu9:B (2.2) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112358 3uu9:B (2.2) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112359 3uu9:B (2.2) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112360 3uu9:B (2.2) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112361 3uu9:B (2.2) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112362 3uu9:B (2.2) BS09 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112363 3uu9:B (2.2) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 22281743
    112364 3uue:A (1.45) BS01 GOL 3.1.1.- GO:0005576 ... A8PUY1 22484238
    112365 3uue:A (1.45) BS02 GOL 3.1.1.- GO:0005576 ... A8PUY1 22484238
    112366 3uus:A (5.65) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112367 3uus:A (5.65) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112368 3uus:B (5.65) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112369 3uus:B (5.65) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112370 3uus:B (5.65) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112371 3uus:C (5.65) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112372 3uus:C (5.65) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112373 3uus:C (5.65) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112374 3uus:D (5.65) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112375 3uus:D (5.65) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 22160671
    112376 3uus:E (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112377 3uus:E (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112378 3uus:F (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112379 3uus:F (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112380 3uus:G (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112381 3uus:G (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112382 3uus:H (5.65) BS01 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112383 3uus:H (5.65) BS02 FE 1.17.4.1 GO:0004748 ... P69924 22160671
    112384 3uuz:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    112385 3uuz:A (2.1) BS02 0CB 3.4.21.4 GO:0004175 ... P00760 25003390 BindingDB: Ki=159nM
    112386 3uuz:B (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    112387 3uuz:B (2.1) BS02 0CB 3.4.21.4 GO:0004175 ... P00760 25003390 BindingDB: Ki=159nM
    112388 3uv3:A (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112389 3uv3:A (1.6) BS02 0CM 1.17.7.4 GO:0005829 ... P62623 22948824
    112390 3uv3:B (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112391 3uv3:B (1.6) BS02 0CM 1.17.7.4 GO:0005829 ... P62623 22948824
    112392 3uv6:A (1.7) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112393 3uv6:A (1.7) BS02 0CH 1.17.7.4 GO:0005829 ... P62623 22948824
    112394 3uv6:B (1.7) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112395 3uv6:B (1.7) BS02 0CH 1.17.7.4 GO:0005829 ... P62623 22948824
    112396 3uv7:A (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112397 3uv7:A (1.6) BS02 0CN 1.17.7.4 GO:0005829 ... P62623 22948824
    112398 3uv7:B (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    112399 3uv7:B (1.6) BS02 0CN 1.17.7.4 GO:0005829 ... P62623 22948824
    112400 3uva:A (2.69) BS01 MN 5.3.1.14 GO:0005737 ... Q9KCL9 24925069
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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