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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111801 3unc:B (1.65) BS03 FAD 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111802 3unc:B (1.65) BS04 CO3 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111803 3unc:B (1.65) BS05 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111804 3und:A (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111805 3und:A (2.1) BS02 PEP 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111806 3und:A (2.1) BS03 KD0 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111807 3und:B (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111808 3und:B (2.1) BS02 PEP 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111809 3und:B (2.1) BS03 KD0 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111810 3und:C (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111811 3und:C (2.1) BS02 PEP 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111812 3und:C (2.1) BS03 KD0 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111813 3und:D (2.1) BS01 A5P 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111814 3und:D (2.1) BS02 PEP 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111815 3und:D (2.1) BS03 KD0 2.5.1.55 GO:0005737 ... Q3JP68 23382856
    111816 3unf:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O35955 22341445
    111817 3unf:I (2.9) BS01 04C ? GO:0000502 ... Q9R1P1 22341445
    111818 3unf:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P28063 22341445
    111819 3unf:N (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P28076 22341445
    111820 3unf:V (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O35955 22341445
    111821 3unf:W (2.9) BS01 04C ? GO:0000502 ... Q9R1P1 22341445
    111822 3unf:Y (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P28063 22341445
    111823 3unf:b (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P28076 22341445
    111824 3uni:A (2.2) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111825 3uni:A (2.2) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111826 3uni:A (2.2) BS03 FAD 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111827 3uni:A (2.2) BS04 NAI 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111828 3uni:A (2.2) BS05 CO3 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111829 3uni:A (2.2) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111830 3uni:B (2.2) BS01 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111831 3uni:B (2.2) BS02 FES 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111832 3uni:B (2.2) BS03 FAD 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111833 3uni:B (2.2) BS04 NAI 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111834 3uni:B (2.2) BS05 CO3 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111835 3uni:B (2.2) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 22145797
    111836 3unj:A (1.9001) BS01 0BX 2.7.11.22 GO:0000082 ... P24941 22248356 MOAD: ic50=11uM
    PDBbind: -logKd/Ki=4.96, IC50=11uM
    111837 3unk:A (2.1) BS01 0BY 2.7.11.22 GO:0000082 ... P24941 22248356 MOAD: ic50=15uM
    PDBbind: -logKd/Ki=4.82, IC50=15uM
    111838 3unq:A (1.62) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    111839 3uns:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    111840 3uns:A (1.8) BS02 ANH 3.4.21.4 GO:0004175 ... P00760 25003390
    111841 3unt:A (1.801) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 24975703
    111842 3uny:A (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111843 3uny:A (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111844 3uny:A (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111845 3uny:B (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111846 3uny:B (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111847 3uny:B (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111848 3uny:C (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111849 3uny:C (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111850 3uny:D (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111851 3uny:D (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111852 3uny:E (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111853 3uny:E (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111854 3uny:E (1.95) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111855 3uny:F (1.95) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111856 3uny:F (1.95) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111857 3uo0:A (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111858 3uo0:A (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111859 3uo0:A (2.3) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111860 3uo0:A (2.3) BS04 G16 5.4.2.7 GO:0000287 ... Q818Z9 22329805 MOAD: Kd=0.47uM
    111861 3uo0:B (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111862 3uo0:B (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111863 3uo0:C (2.3) BS01 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111864 3uo0:C (2.3) BS02 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111865 3uo0:C (2.3) BS03 MN 5.4.2.7 GO:0000287 ... Q818Z9 22329805
    111866 3uof:A (2.902) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111867 3uof:A (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111868 3uof:A (2.902) BS03 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111869 3uof:B (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111870 3uof:B (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111871 3uof:B (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111872 3uof:C (2.902) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111873 3uof:C (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111874 3uof:C (2.902) BS03 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111875 3uof:D (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111876 3uof:D (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111877 3uof:D (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111878 3uof:E (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111879 3uof:E (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111880 3uof:E (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111881 3uof:F (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111882 3uof:F (2.902) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111883 3uof:F (2.902) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111884 3uoi:A (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111885 3uoi:B (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111886 3uoi:C (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111887 3uoi:D (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111888 3uoi:E (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111889 3uoi:F (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111890 3uoi:G (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111891 3uoi:H (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111892 3uoi:I (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111893 3uoi:J (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111894 3uoi:K (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111895 3uoi:L (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111896 3uoi:M (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111897 3uoi:N (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111898 3uoi:O (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111899 3uoi:P (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111900 3uoi:Q (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111901 3uoi:R (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111902 3uoi:S (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111903 3uoi:T (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111904 3uoi:U (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111905 3uoi:V (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111906 3uoi:W (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111907 3uoi:X (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111908 3uoi:a (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111909 3uoi:b (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111910 3uoi:c (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111911 3uoi:d (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111912 3uoi:e (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111913 3uoi:f (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111914 3uoi:g (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111915 3uoi:h (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111916 3uoi:i (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111917 3uoi:j (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111918 3uoi:k (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111919 3uoi:l (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111920 3uoi:m (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111921 3uoi:n (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111922 3uoi:o (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111923 3uoi:p (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111924 3uoi:q (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111925 3uoi:r (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111926 3uoi:s (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111927 3uoi:t (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111928 3uoi:u (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111929 3uoi:v (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111930 3uoi:w (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111931 3uoi:x (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    111932 3uom:A (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111933 3uom:A (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111934 3uom:A (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111935 3uom:A (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111936 3uom:A (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111937 3uom:A (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111938 3uom:A (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111939 3uom:A (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111940 3uom:A (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111941 3uom:A (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111942 3uom:B (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111943 3uom:B (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111944 3uom:B (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111945 3uom:B (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111946 3uom:B (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111947 3uom:B (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111948 3uom:B (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111949 3uom:B (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111950 3uom:B (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111951 3uom:B (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111952 3uom:B (2.02) BS11 CA ? GO:0005509 ... P31415 22337878
    111953 3uom:B (2.02) BS12 CA ? GO:0005509 ... P31415 22337878
    111954 3uom:C (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111955 3uom:C (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111956 3uom:C (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111957 3uom:C (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111958 3uom:C (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111959 3uom:C (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111960 3uom:C (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111961 3uom:C (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111962 3uom:C (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111963 3uom:C (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111964 3uom:D (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111965 3uom:D (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111966 3uom:D (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111967 3uom:D (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111968 3uom:D (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111969 3uom:D (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111970 3uom:D (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111971 3uom:D (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111972 3uom:D (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111973 3uom:D (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111974 3uom:E (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111975 3uom:E (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111976 3uom:E (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111977 3uom:E (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111978 3uom:E (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111979 3uom:E (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111980 3uom:E (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111981 3uom:E (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111982 3uom:E (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111983 3uom:E (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111984 3uom:E (2.02) BS11 CA ? GO:0005509 ... P31415 22337878
    111985 3uom:F (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    111986 3uom:F (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    111987 3uom:F (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    111988 3uom:F (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    111989 3uom:F (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    111990 3uom:F (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    111991 3uom:F (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    111992 3uom:F (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    111993 3uom:F (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    111994 3uom:F (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    111995 3uon:A (3.0) BS01 QNB 3.2.1.17 GO:0003796 ... P00720
    P08172    		 22278061
    111996 3uon:A (3.0) BS02 BGC 3.2.1.17 GO:0003796 ... P00720
    P08172    		 22278061
    111997 3uop:A (1.69) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    111998 3uop:A (1.69) BS02 PMJ 3.4.21.4 GO:0004175 ... P00760 25003390
    111999 3uow:A (2.72) BS01 XMP 6.3.5.2 GO:0000287 ... Q8IJR9 N/A
    112000 3uow:B (2.72) BS01 XMP 6.3.5.2 GO:0000287 ... Q8IJR9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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