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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    106001 3re7:Q (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106002 3re7:R (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106003 3re7:R (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106004 3re7:R (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106005 3re7:R (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106006 3re7:R (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106007 3re7:S (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106008 3re7:S (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106009 3re7:S (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106010 3re7:S (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106011 3re7:T (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106012 3re7:T (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106013 3re7:T (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106014 3re7:U (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106015 3re7:U (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106016 3re7:U (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106017 3re7:U (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106018 3re7:V (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106019 3re7:V (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106020 3re7:V (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106021 3re7:V (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106022 3re7:V (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106023 3re7:V (2.82) BS06 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106024 3re7:W (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106025 3re7:W (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106026 3re7:W (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106027 3re7:W (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106028 3re7:W (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106029 3re7:W (2.82) BS06 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106030 3re7:X (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106031 3re7:X (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106032 3re7:X (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106033 3re7:X (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106034 3re7:X (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106035 3re8:A (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 21524057
    106036 3re8:B (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 21524057
    106037 3re8:C (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 21524057
    106038 3re8:D (1.9) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 21524057
    106039 3ree:A (1.76) BS01 FES 2.6.1.3 GO:0010506 ... Q9NZ45 21591687
    106040 3reh:A (2.5) BS01 dna ? GO:0000786 ... P84233 21724603
    106041 3reh:A (2.5) BS02 dna ? GO:0000786 ... P84233 21724603
    106042 3reh:B (2.5) BS01 dna ? GO:0000786 ... P62799 21724603
    106043 3reh:B (2.5) BS02 dna ? GO:0000786 ... P62799 21724603
    106044 3reh:C (2.5) BS01 dna ? GO:0000786 ... P06897 21724603
    106045 3reh:C (2.5) BS02 dna ? GO:0000786 ... P06897 21724603
    106046 3reh:D (2.5) BS01 dna ? GO:0000786 ... P02281 21724603
    106047 3reh:D (2.5) BS02 dna ? GO:0000786 ... P02281 21724603
    106048 3reh:E (2.5) BS01 dna ? GO:0000786 ... P84233 21724603
    106049 3reh:E (2.5) BS02 dna ? GO:0000786 ... P84233 21724603
    106050 3reh:F (2.5) BS01 dna ? GO:0000786 ... P62799 21724603
    106051 3reh:F (2.5) BS02 dna ? GO:0000786 ... P62799 21724603
    106052 3reh:G (2.5) BS01 dna ? GO:0000786 ... P06897 21724603
    106053 3reh:G (2.5) BS02 dna ? GO:0000786 ... P06897 21724603
    106054 3reh:H (2.5) BS01 dna ? GO:0000786 ... P02281 21724603
    106055 3reh:H (2.5) BS02 dna ? GO:0000786 ... P02281 21724603
    106056 3rei:A (2.65) BS01 dna ? GO:0000786 ... P84233 21724603
    106057 3rei:A (2.65) BS02 dna ? GO:0000786 ... P84233 21724603
    106058 3rei:B (2.65) BS01 dna ? GO:0000786 ... P62799 21724603
    106059 3rei:B (2.65) BS02 dna ? GO:0000786 ... P62799 21724603
    106060 3rei:C (2.65) BS01 dna ? GO:0000786 ... P06897 21724603
    106061 3rei:C (2.65) BS02 dna ? GO:0000786 ... P06897 21724603
    106062 3rei:D (2.65) BS01 dna ? GO:0000786 ... P02281 21724603
    106063 3rei:D (2.65) BS02 dna ? GO:0000786 ... P02281 21724603
    106064 3rei:E (2.65) BS01 dna ? GO:0000786 ... P84233 21724603
    106065 3rei:E (2.65) BS02 dna ? GO:0000786 ... P84233 21724603
    106066 3rei:F (2.65) BS01 dna ? GO:0000786 ... P62799 21724603
    106067 3rei:F (2.65) BS02 dna ? GO:0000786 ... P62799 21724603
    106068 3rei:G (2.65) BS01 dna ? GO:0000786 ... P06897 21724603
    106069 3rei:G (2.65) BS02 dna ? GO:0000786 ... P06897 21724603
    106070 3rei:H (2.65) BS01 dna ? GO:0000786 ... P02281 21724603
    106071 3rei:H (2.65) BS02 dna ? GO:0000786 ... P02281 21724603
    106072 3rej:A (2.55) BS01 dna ? GO:0000786 ... P84233 21724603
    106073 3rej:A (2.55) BS02 dna ? GO:0000786 ... P84233 21724603
    106074 3rej:B (2.55) BS01 dna ? GO:0000786 ... P62799 21724603
    106075 3rej:B (2.55) BS02 dna ? GO:0000786 ... P62799 21724603
    106076 3rej:C (2.55) BS01 dna ? GO:0000786 ... P06897 21724603
    106077 3rej:C (2.55) BS02 dna ? GO:0000786 ... P06897 21724603
    106078 3rej:D (2.55) BS01 dna ? GO:0000786 ... P02281 21724603
    106079 3rej:D (2.55) BS02 dna ? GO:0000786 ... P02281 21724603
    106080 3rej:E (2.55) BS01 dna ? GO:0000786 ... P84233 21724603
    106081 3rej:E (2.55) BS02 dna ? GO:0000786 ... P84233 21724603
    106082 3rej:F (2.55) BS01 dna ? GO:0000786 ... P62799 21724603
    106083 3rej:F (2.55) BS02 dna ? GO:0000786 ... P62799 21724603
    106084 3rej:G (2.55) BS01 dna ? GO:0000786 ... P06897 21724603
    106085 3rej:G (2.55) BS02 dna ? GO:0000786 ... P06897 21724603
    106086 3rej:H (2.55) BS01 dna ? GO:0000786 ... P02281 21724603
    106087 3rej:H (2.55) BS02 dna ? GO:0000786 ... P02281 21724603
    106088 3rek:A (2.6) BS01 dna ? GO:0000786 ... P84233 21724603
    106089 3rek:A (2.6) BS02 dna ? GO:0000786 ... P84233 21724603
    106090 3rek:B (2.6) BS01 dna ? GO:0000786 ... P62799 21724603
    106091 3rek:B (2.6) BS02 dna ? GO:0000786 ... P62799 21724603
    106092 3rek:C (2.6) BS01 dna ? GO:0000786 ... P06897 21724603
    106093 3rek:C (2.6) BS02 dna ? GO:0000786 ... P06897 21724603
    106094 3rek:D (2.6) BS01 dna ? GO:0000786 ... P02281 21724603
    106095 3rek:D (2.6) BS02 dna ? GO:0000786 ... P02281 21724603
    106096 3rek:E (2.6) BS01 dna ? GO:0000786 ... P84233 21724603
    106097 3rek:E (2.6) BS02 dna ? GO:0000786 ... P84233 21724603
    106098 3rek:F (2.6) BS01 dna ? GO:0000786 ... P62799 21724603
    106099 3rek:F (2.6) BS02 dna ? GO:0000786 ... P62799 21724603
    106100 3rek:G (2.6) BS01 dna ? GO:0000786 ... P06897 21724603
    106101 3rek:G (2.6) BS02 dna ? GO:0000786 ... P06897 21724603
    106102 3rek:H (2.6) BS01 dna ? GO:0000786 ... P02281 21724603
    106103 3rek:H (2.6) BS02 dna ? GO:0000786 ... P02281 21724603
    106104 3rel:A (2.7) BS01 dna ? GO:0000786 ... P84233 21724603
    106105 3rel:A (2.7) BS02 dna ? GO:0000786 ... P84233 21724603
    106106 3rel:B (2.7) BS01 dna ? GO:0000786 ... P62799 21724603
    106107 3rel:B (2.7) BS02 dna ? GO:0000786 ... P62799 21724603
    106108 3rel:C (2.7) BS01 dna ? GO:0000786 ... P06897 21724603
    106109 3rel:C (2.7) BS02 dna ? GO:0000786 ... P06897 21724603
    106110 3rel:D (2.7) BS01 dna ? GO:0000786 ... P02281 21724603
    106111 3rel:D (2.7) BS02 dna ? GO:0000786 ... P02281 21724603
    106112 3rel:E (2.7) BS01 dna ? GO:0000786 ... P84233 21724603
    106113 3rel:E (2.7) BS02 dna ? GO:0000786 ... P84233 21724603
    106114 3rel:F (2.7) BS01 dna ? GO:0000786 ... P62799 21724603
    106115 3rel:F (2.7) BS02 dna ? GO:0000786 ... P62799 21724603
    106116 3rel:G (2.7) BS01 dna ? GO:0000786 ... P06897 21724603
    106117 3rel:G (2.7) BS02 dna ? GO:0000786 ... P06897 21724603
    106118 3rel:H (2.7) BS01 dna ? GO:0000786 ... P02281 21724603
    106119 3rel:H (2.7) BS02 dna ? GO:0000786 ... P02281 21724603
    106120 3req:A (2.7) BS01 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    106121 3req:A (2.7) BS02 ADN 5.4.99.2 GO:0003824 ... P11653 9655823
    106122 3rey:A (3.309) BS01 XAC ? GO:0001609 ... P29274 21885291 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=63nM
    106123 3rf3:A (1.61) BS01 peptide ? GO:0003779 ... P18206 21525010
    106124 3rf3:A (1.61) BS02 peptide ? GO:0003779 ... P18206 21525010
    106125 3rf3:B (1.61) BS01 peptide ? GO:0003779 ... P18206 21525010
    106126 3rf3:B (1.61) BS02 peptide ? GO:0003779 ... P18206 21525010
    106127 3rf4:A (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    PDBbind: -logKd/Ki=6.25, Ki=0.56uM
    106128 3rf4:A (1.8) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    106129 3rf4:B (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    106130 3rf4:B (1.8) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    106131 3rf4:B (1.8) BS03 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    106132 3rf4:C (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    PDBbind: -logKd/Ki=6.25, Ki=0.56uM
    106133 3rf5:A (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    PDBbind: -logKd/Ki=5.63, Ki=2.37uM
    106134 3rf5:A (2.1) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    106135 3rf5:B (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    106136 3rf5:B (2.1) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    106137 3rf5:B (2.1) BS03 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    106138 3rf5:C (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    PDBbind: -logKd/Ki=5.63, Ki=2.37uM
    106139 3rf5:C (2.1) BS02 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    PDBbind: -logKd/Ki=5.63, Ki=2.37uM
    106140 3rf6:A (1.695) BS01 G3P 3.-.-.- GO:0003674 ... P36151 N/A
    106141 3rf6:A (1.695) BS02 MG 3.-.-.- GO:0003674 ... P36151 N/A
    106142 3rf6:A (1.695) BS03 MG 3.-.-.- GO:0003674 ... P36151 N/A
    106143 3rf6:B (1.695) BS01 MG 3.-.-.- GO:0003674 ... P36151 N/A
    106144 3rf6:B (1.695) BS02 G3P 3.-.-.- GO:0003674 ... P36151 N/A
    106145 3rf6:B (1.695) BS03 MG 3.-.-.- GO:0003674 ... P36151 N/A
    106146 3rf9:A (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    106147 3rf9:B (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    106148 3rfa:A (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    106149 3rfa:A (2.05) BS02 SAM 2.1.1.192 GO:0000049 ... P36979 21527678
    106150 3rfa:B (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    106151 3rfa:B (2.05) BS02 SAM 2.1.1.192 GO:0000049 ... P36979 21527678
    106152 3rfb:A (2.3) BS01 SME 1.8.4.14 GO:0005829 ... Q8DQA6 N/A
    106153 3rfb:B (2.3) BS01 SME 1.8.4.14 GO:0005829 ... Q8DQA6 N/A
    106154 3rfc:A (2.1) BS01 ADP N/A GO:0005524 ... N/A N/A
    106155 3rfc:A (2.1) BS02 MG N/A GO:0005524 ... N/A N/A
    106156 3rfm:A (3.598) BS01 CFF ? GO:0001609 ... P29274 21885291 BindingDB: Ki=23400nM
    106157 3rfn:A (1.8) BS01 ZN ? GO:0000166 ... O58307 22061265
    106158 3rfr:C (2.68) BS01 peptide ? GO:0016020 ... Q9KX37 22013879
    106159 3rfr:C (2.68) BS02 ZN ? GO:0016020 ... Q9KX37 22013879
    106160 3rfr:C (2.68) BS03 ZN ? GO:0016020 ... Q9KX37 22013879
    106161 3rfr:G (2.68) BS01 ZN ? GO:0016020 ... Q9KX37 22013879
    106162 3rfr:G (2.68) BS02 ZN ? GO:0016020 ... Q9KX37 22013879
    106163 3rfr:K (2.68) BS01 ZN ? GO:0016020 ... Q9KX37 22013879
    106164 3rfu:A (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106165 3rfu:A (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106166 3rfu:B (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106167 3rfu:B (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106168 3rfu:C (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106169 3rfu:C (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106170 3rfu:D (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106171 3rfu:D (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    106172 3rg0:A (2.57) BS01 CA ? GO:0005509 ... P14211 21652723
    106173 3rg1:A (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106174 3rg1:E (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106175 3rg1:I (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106176 3rg1:J (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106177 3rg1:M (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106178 3rg1:N (2.91) BS01 MAN ? GO:0016020 ... A6QNK7 21857663
    106179 3rg2:A (3.1) BS01 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602 PDBbind: -logKd/Ki=4.20, Kd=63uM
    106180 3rg2:A (3.1) BS02 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602 PDBbind: -logKd/Ki=4.20, Kd=63uM
    106181 3rg2:B (3.1) BS01 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602 PDBbind: -logKd/Ki=4.20, Kd=63uM
    106182 3rg2:B (3.1) BS02 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602 PDBbind: -logKd/Ki=4.20, Kd=63uM
    106183 3rg2:C (3.1) BS01 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106184 3rg2:C (3.1) BS02 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106185 3rg2:D (3.1) BS01 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106186 3rg2:D (3.1) BS02 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106187 3rg2:E (3.1) BS01 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106188 3rg2:E (3.1) BS02 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106189 3rg2:F (3.1) BS01 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106190 3rg2:F (3.1) BS02 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106191 3rg2:G (3.1) BS01 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106192 3rg2:G (3.1) BS02 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106193 3rg2:H (3.1) BS01 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106194 3rg2:H (3.1) BS02 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106195 3rg2:I (3.1) BS01 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106196 3rg2:I (3.1) BS02 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106197 3rg2:J (3.1) BS01 PNS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106198 3rg2:J (3.1) BS02 SVS 3.3.2.1
    6.2.1.71
    6.3.2.14
    GO:0005515 ... P0ADI4
    P10378
    22365602
    106199 3rg3:A (1.903) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 22001224
    106200 3rg4:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 22001224

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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