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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    105801 3rbc:J (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105802 3rbc:J (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105803 3rbc:K (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105804 3rbc:K (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105805 3rbc:L (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105806 3rbc:L (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105807 3rbc:M (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105808 3rbc:M (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105809 3rbc:N (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105810 3rbc:N (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105811 3rbc:O (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105812 3rbc:O (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105813 3rbc:P (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105814 3rbc:P (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105815 3rbc:Q (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105816 3rbc:Q (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105817 3rbc:R (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105818 3rbc:R (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105819 3rbc:S (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105820 3rbc:S (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105821 3rbc:T (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105822 3rbc:T (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105823 3rbc:U (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105824 3rbc:U (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105825 3rbc:V (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105826 3rbc:V (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105827 3rbc:W (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105828 3rbc:W (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105829 3rbc:X (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105830 3rbc:X (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    105831 3rbd:A (2.502) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105832 3rbd:A (2.502) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105833 3rbd:A (2.502) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105834 3rbd:A (2.502) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105835 3rbd:A (2.502) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105836 3rbd:A (2.502) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105837 3rbd:B (2.502) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105838 3rbd:B (2.502) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105839 3rbd:B (2.502) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105840 3rbd:B (2.502) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105841 3rbd:B (2.502) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105842 3rbd:B (2.502) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105843 3rbe:A (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105844 3rbe:A (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105845 3rbe:A (2.8) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105846 3rbe:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105847 3rbe:A (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105848 3rbe:A (2.8) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105849 3rbe:B (2.8) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105850 3rbe:B (2.8) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105851 3rbe:B (2.8) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105852 3rbe:B (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105853 3rbe:B (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105854 3rbe:B (2.8) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 21645853
    105855 3rbf:A (2.9) BS01 PLP 4.1.1.28 GO:0001822 ... P20711 22143761
    105856 3rbh:A (2.301) BS01 CA ? GO:0009279 ... P18895 21778407
    105857 3rbh:A (2.301) BS02 C8E ? GO:0009279 ... P18895 21778407
    105858 3rbh:A (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    105859 3rbh:B (2.301) BS01 CA ? GO:0009279 ... P18895 21778407
    105860 3rbh:B (2.301) BS02 C8E ? GO:0009279 ... P18895 21778407
    105861 3rbh:B (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    105862 3rbh:B (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    105863 3rbh:B (2.301) BS05 C8E ? GO:0009279 ... P18895 21778407
    105864 3rbh:C (2.301) BS01 C8E ? GO:0009279 ... P18895 21778407
    105865 3rbh:C (2.301) BS02 CA ? GO:0009279 ... P18895 21778407
    105866 3rbh:C (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    105867 3rbh:C (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    105868 3rbh:D (2.301) BS01 C8E ? GO:0009279 ... P18895 21778407
    105869 3rbh:D (2.301) BS02 CA ? GO:0009279 ... P18895 21778407
    105870 3rbh:D (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    105871 3rbh:D (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    105872 3rbh:D (2.301) BS05 C8E ? GO:0009279 ... P18895 21778407
    105873 3rbh:D (2.301) BS06 C8E ? GO:0009279 ... P18895 21778407
    105874 3rbh:D (2.301) BS07 C8E ? GO:0009279 ... P18895 21778407
    105875 3rbh:D (2.301) BS08 C8E ? GO:0009279 ... P18895 21778407
    105876 3rbh:D (2.301) BS09 C8E ? GO:0009279 ... P18895 21778407
    105877 3rbh:D (2.301) BS10 C8E ? GO:0009279 ... P18895 21778407
    105878 3rbm:A (2.61) BS01 MG ? GO:0004161 ... A5K4U6 22392982
    105879 3rbm:A (2.61) BS02 MG ? GO:0004161 ... A5K4U6 22392982
    105880 3rbm:A (2.61) BS03 B73 ? GO:0004161 ... A5K4U6 22392982 PDBbind: -logKd/Ki=6.57, Ki=270nM
    105881 3rbm:A (2.61) BS04 B73 ? GO:0004161 ... A5K4U6 22392982 PDBbind: -logKd/Ki=6.57, Ki=270nM
    105882 3rbm:B (2.61) BS01 B73 ? GO:0004161 ... A5K4U6 22392982 PDBbind: -logKd/Ki=6.57, Ki=270nM
    105883 3rbm:B (2.61) BS02 MG ? GO:0004161 ... A5K4U6 22392982
    105884 3rbm:B (2.61) BS03 MG ? GO:0004161 ... A5K4U6 22392982
    105885 3rbm:B (2.61) BS04 B73 ? GO:0004161 ... A5K4U6 22392982 PDBbind: -logKd/Ki=6.57, Ki=270nM
    105886 3rbm:C (2.61) BS01 MG ? GO:0004161 ... A5K4U6 22392982
    105887 3rbm:C (2.61) BS02 MG ? GO:0004161 ... A5K4U6 22392982
    105888 3rbm:C (2.61) BS03 MG ? GO:0004161 ... A5K4U6 22392982
    105889 3rbm:C (2.61) BS04 B73 ? GO:0004161 ... A5K4U6 22392982
    105890 3rbm:C (2.61) BS05 B73 ? GO:0004161 ... A5K4U6 22392982
    105891 3rbm:D (2.61) BS01 B73 ? GO:0004161 ... A5K4U6 22392982
    105892 3rbm:D (2.61) BS02 MG ? GO:0004161 ... A5K4U6 22392982
    105893 3rbm:D (2.61) BS03 MG ? GO:0004161 ... A5K4U6 22392982
    105894 3rbm:D (2.61) BS04 B73 ? GO:0004161 ... A5K4U6 22392982
    105895 3rbu:A (1.6) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 22178733
    105896 3rbu:A (1.6) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 22178733
    105897 3rbu:A (1.6) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 22178733
    105898 3rbu:A (1.6) BS04 G88 3.4.17.21 GO:0004180 ... Q04609 22178733 MOAD: Ki=370pM
    PDBbind: -logKd/Ki=9.43, Ki=370pM
    BindingDB: Ki=0.280000nM, IC50=300nM, Kd=0.5nM, EC50=0.620000nM
    105899 3rbz:A (3.4) BS01 CA ? GO:0005886 ... O27564 N/A
    105900 3rbz:A (3.4) BS02 CA ? GO:0005886 ... O27564 N/A
    105901 3rbz:B (3.4) BS01 CA ? GO:0005886 ... O27564 N/A
    105902 3rbz:B (3.4) BS02 CA ? GO:0005886 ... O27564 N/A
    105903 3rbz:C (3.4) BS01 CA ? GO:0005886 ... O27564 N/A
    105904 3rbz:C (3.4) BS02 CA ? GO:0005886 ... O27564 N/A
    105905 3rbz:D (3.4) BS01 CA ? GO:0005886 ... O27564 N/A
    105906 3rbz:D (3.4) BS02 CA ? GO:0005886 ... O27564 N/A
    105907 3rc0:A (2.19) BS01 peptide 2.1.1.- GO:0005515 ... Q8TBK2 21515635
    105908 3rc0:A (2.19) BS02 SAM 2.1.1.- GO:0005515 ... Q8TBK2 21515635
    105909 3rc0:B (2.19) BS01 peptide 2.1.1.- GO:0005515 ... Q8TBK2 21515635
    105910 3rc0:B (2.19) BS02 SAM 2.1.1.- GO:0005515 ... Q8TBK2 21515635
    105911 3rce:A (3.4) BS01 peptide 2.4.99.19 GO:0000287 ... B9KDD4 21677752
    105912 3rce:A (3.4) BS02 MG 2.4.99.19 GO:0000287 ... B9KDD4 21677752
    105913 3rce:A (3.4) BS03 MG 2.4.99.19 GO:0000287 ... B9KDD4 21677752
    105914 3rch:B (2.8) BS01 PLP 4.1.1.28 GO:0001822 ... P20711 22143761
    105915 3rcm:A (2.05) BS01 ZN 3.1.21.- GO:0004518 ... Q88KH9 N/A
    105916 3rd0:A (2.0) BS01 EDP ? GO:0005506 ... P02791 N/A
    105917 3rdd:A (2.14) BS01 EA4 5.2.1.8 GO:0000413 ... P62937 27652979 BindingDB: Ki=16800nM
    105918 3rdh:A (2.39) BS01 3RD ? GO:0000122 ... P63104 21908710 PDBbind: -logKd/Ki=5.03, IC50=9.3uM
    BindingDB: IC50=9300nM
    105919 3rdh:B (2.39) BS01 3RD ? GO:0000122 ... P63104 21908710 BindingDB: IC50=9300nM
    105920 3rdh:C (2.39) BS01 3RD ? GO:0000122 ... P63104 21908710 BindingDB: IC50=9300nM
    105921 3rdh:D (2.39) BS01 3RD ? GO:0000122 ... P63104 21908710 BindingDB: IC50=9300nM
    105922 3rdi:A (2.95) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    105923 3rdi:B (2.95) BS01 CMP ? GO:0003677 ... P0ACJ8 N/A
    105924 3rdz:A (2.262) BS01 CA 3.4.21.4 GO:0004175 ... P00760 21698291
    105925 3rdz:B (2.262) BS01 CA 3.4.21.4 GO:0004175 ... P00760 21698291
    105926 3re7:A (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105927 3re7:A (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105928 3re7:A (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105929 3re7:A (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105930 3re7:B (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105931 3re7:B (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105932 3re7:B (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105933 3re7:B (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105934 3re7:C (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105935 3re7:C (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105936 3re7:C (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105937 3re7:C (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105938 3re7:C (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105939 3re7:C (2.82) BS06 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105940 3re7:D (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105941 3re7:D (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105942 3re7:D (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105943 3re7:D (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105944 3re7:D (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105945 3re7:E (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105946 3re7:E (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105947 3re7:E (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105948 3re7:E (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105949 3re7:F (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105950 3re7:F (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105951 3re7:F (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105952 3re7:G (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105953 3re7:G (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105954 3re7:G (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105955 3re7:G (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105956 3re7:G (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105957 3re7:H (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105958 3re7:H (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105959 3re7:H (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105960 3re7:H (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105961 3re7:I (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105962 3re7:I (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105963 3re7:I (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105964 3re7:I (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105965 3re7:I (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105966 3re7:J (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105967 3re7:J (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105968 3re7:J (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105969 3re7:J (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105970 3re7:K (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105971 3re7:K (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105972 3re7:K (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105973 3re7:L (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105974 3re7:L (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105975 3re7:L (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105976 3re7:L (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105977 3re7:L (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105978 3re7:M (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105979 3re7:M (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105980 3re7:M (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105981 3re7:M (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105982 3re7:M (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105983 3re7:N (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105984 3re7:N (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105985 3re7:N (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105986 3re7:N (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105987 3re7:N (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105988 3re7:O (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105989 3re7:O (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105990 3re7:O (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105991 3re7:O (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105992 3re7:O (2.82) BS05 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105993 3re7:P (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105994 3re7:P (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105995 3re7:P (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105996 3re7:P (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105997 3re7:Q (2.82) BS01 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105998 3re7:Q (2.82) BS02 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    105999 3re7:Q (2.82) BS03 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    106000 3re7:Q (2.82) BS04 CU 1.16.3.1 GO:0004322 ... P07798 22424302
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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