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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    103001 3pla:E (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    103002 3pla:F (3.15) BS01 rna 2.1.1.- GO:0000494 ... P58032 21270896
    103003 3pla:F (3.15) BS02 rna 2.1.1.- GO:0000494 ... P58032 21270896
    103004 3pla:F (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    103005 3pla:K (3.15) BS01 rna ? GO:0005515 ... Q97ZH3 21270896
    103006 3pla:K (3.15) BS02 rna ? GO:0005515 ... Q97ZH3 21270896
    103007 3pla:L (3.15) BS01 rna ? GO:0001682 ... D0KRE2 21270896
    103008 3pla:M (3.15) BS01 rna 2.1.1.- GO:0000494 ... P58032 21270896
    103009 3pla:M (3.15) BS02 rna 2.1.1.- GO:0000494 ... P58032 21270896
    103010 3pla:M (3.15) BS03 SAH 2.1.1.- GO:0000494 ... P58032 21270896
    103011 3plb:A (1.18) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    103012 3ple:A (1.6) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103013 3ple:A (1.6) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103014 3ple:A (1.6) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103015 3plg:A (1.601) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103016 3plg:A (1.601) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103017 3plg:A (1.601) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103018 3plh:A (1.8) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103019 3plh:A (1.8) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103020 3plh:A (1.8) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103021 3plh:A (1.8) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103022 3pli:A (1.68) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103023 3pli:A (1.68) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103024 3pli:A (1.68) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103025 3pli:A (1.68) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103026 3plj:A (1.732) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103027 3plj:A (1.732) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103028 3plj:A (1.732) BS03 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103029 3plk:A (1.53) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    103030 3plk:A (1.53) BS02 ANH 3.4.21.4 GO:0004175 ... P00760 25003390
    103031 3plm:A (1.621) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 21421845
    103032 3plm:A (1.621) BS02 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103033 3plm:A (1.621) BS03 XE 1.7.3.3 GO:0004846 ... Q00511 21421845
    103034 3plm:A (1.621) BS04 N2O 1.7.3.3 GO:0004846 ... Q00511 21421845
    103035 3plp:A (1.63) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    103036 3plp:A (1.63) BS02 BBA 3.4.21.4 GO:0004175 ... P00760 25003390
    103037 3plu:A (1.4) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    103038 3plu:B (1.4) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    103039 3plv:A (1.9) BS01 peptide ? GO:0000398 ... Q6Q546 21614000
    103040 3ply:A (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    103041 3ply:B (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    103042 3ply:C (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    103043 3ply:D (2.2) BS01 CU ? GO:0005507 ... P22364 21268585
    103044 3pm0:A (2.7) BS01 HEM 1.14.14.1
    4.2.1.152    		 GO:0001525 ... Q16678 21147782
    103045 3pm0:A (2.7) BS02 BHF 1.14.14.1
    4.2.1.152    		 GO:0001525 ... Q16678 21147782 BindingDB: IC50=>10000nM, EC50=35000nM, Ki=16nM
    103046 3pm3:A (1.53) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    103047 3pm3:A (1.53) BS02 TFN 3.4.21.4 GO:0004175 ... P00760 25003390
    103048 3pm5:A (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103049 3pm5:A (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103050 3pm5:A (2.3) BS03 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103051 3pm5:A (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103052 3pm5:B (2.3) BS01 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103053 3pm5:B (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103054 3pm5:B (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103055 3pm5:B (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103056 3pm5:C (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103057 3pm5:C (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103058 3pm5:C (2.3) BS03 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103059 3pm5:C (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103060 3pm5:D (2.3) BS01 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103061 3pm5:D (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103062 3pm5:D (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103063 3pm5:D (2.3) BS04 BYC 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    103064 3pme:A (1.56) BS01 SO4 ? GO:0005576 ... Q5DW55 21130733
    103065 3pmg:A (2.4) BS01 MG 5.4.2.2 GO:0000287 ... P00949 15299905
    103066 3pmg:B (2.4) BS01 MG 5.4.2.2 GO:0000287 ... P00949 15299905
    103067 3pmj:A (1.45) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    103068 3pmj:A (1.45) BS02 PMJ 3.4.21.4 GO:0004175 ... P00760 25003390
    103069 3pmk:A (3.03) BS01 peptide ? GO:0003723 ... B7UCZ2 21960769
    103070 3pmk:A (3.03) BS02 peptide ? GO:0003723 ... B7UCZ2 21960769
    103071 3pmk:B (3.03) BS01 peptide ? GO:0003723 ... B7UCZ2 21960769
    103072 3pmk:C (3.03) BS01 peptide ? GO:0003723 ... B7UCZ2 21960769
    103073 3pmk:D (3.03) BS01 peptide ? GO:0003723 ... B7UCZ2 21960769
    103074 3pmk:D (3.03) BS02 peptide ? GO:0003723 ... B7UCZ2 21960769
    103075 3pmr:A (2.11) BS01 PO4 ? GO:0016020 ... P51693 21574595
    103076 3pmr:A (2.11) BS02 PO4 ? GO:0016020 ... P51693 21574595
    103077 3pmr:B (2.11) BS01 PO4 ? GO:0016020 ... P51693 21574595
    103078 3pmr:B (2.11) BS02 PO4 ? GO:0016020 ... P51693 21574595
    103079 3pmv:A (1.8) BS01 GLU ? GO:0015276 ... P19491 21190850
    103080 3pmv:A (1.8) BS02 557 ? GO:0015276 ... P19491 21190850
    103081 3pmw:A (2.2) BS01 GLU ? GO:0015276 ... P19491 21190850
    103082 3pmw:A (2.2) BS02 G69 ? GO:0015276 ... P19491 21190850
    103083 3pmx:A (1.87) BS01 GLU ? GO:0015276 ... P19491 21190850
    103084 3pmx:A (1.87) BS02 808 ? GO:0015276 ... P19491 21190850
    103085 3pmz:B (2.44) BS01 MG ? GO:0004888 ... Q8WSF8 N/A
    103086 3pmz:C (2.44) BS01 MG ? GO:0004888 ... Q8WSF8 N/A
    103087 3pmz:D (2.44) BS01 MG ? GO:0004888 ... Q8WSF8 N/A
    103088 3pmz:D (2.44) BS02 TUB ? GO:0004888 ... Q8WSF8 N/A
    103089 3pmz:E (2.44) BS01 TUB ? GO:0004888 ... Q8WSF8 N/A
    103090 3pmz:E (2.44) BS02 MG ? GO:0004888 ... Q8WSF8 N/A
    103091 3pn7:B (2.25) BS01 MG ? GO:0005509 ... Q26069 21149681
    103092 3pn7:C (2.25) BS01 CA ? GO:0005509 ... Q26066 21149681
    103093 3pn7:E (2.25) BS01 MG ? GO:0005509 ... Q26069 21149681
    103094 3pn7:F (2.25) BS01 CA ? GO:0005509 ... Q26066 21149681
    103095 3pnb:A (2.11) BS01 COA 2.7.7.3 GO:0003824 ... P9WPA5 21543857
    103096 3pnb:B (2.11) BS01 COA 2.7.7.3 GO:0003824 ... P9WPA5 21543857
    103097 3pnb:C (2.11) BS01 COA 2.7.7.3 GO:0003824 ... P9WPA5 21543857
    103098 3pnb:D (2.11) BS01 COA 2.7.7.3 GO:0003824 ... P9WPA5 21543857
    103099 3pnd:A (2.75) BS01 FAD 2.7.1.180 GO:0005886 ... P41780 21148731
    103100 3pnd:B (2.75) BS01 FAD 2.7.1.180 GO:0005886 ... P41780 21148731
    103101 3pnd:C (2.75) BS01 FAD 2.7.1.180 GO:0005886 ... P41780 21148731
    103102 3pnd:D (2.75) BS01 FAD 2.7.1.180 GO:0005886 ... P41780 21148731
    103103 3pnl:B (2.2) BS01 ADP 2.7.1.121 GO:0000287 ... P76014 21209328
    103104 3pnl:B (2.2) BS02 MG 2.7.1.121 GO:0000287 ... P76014 21209328
    103105 3pnl:B (2.2) BS03 MG 2.7.1.121 GO:0000287 ... P76014 21209328
    103106 3pnq:D (2.2) BS01 2HA 2.7.1.121 GO:0004371 ... P76015 21209328
    103107 3pns:B (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103108 3pns:C (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103109 3pns:D (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103110 3pns:E (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103111 3pns:F (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103112 3pns:G (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103113 3pns:H (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103114 3pns:I (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103115 3pns:J (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103116 3pns:K (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103117 3pns:L (2.002) BS01 URA 2.4.2.3 GO:0003824 ... Q9KT71 N/A
    103118 3pnu:A (2.4) BS01 ZN 3.5.2.3 GO:0004151 ... Q0PBP6 N/A
    103119 3pnu:A (2.4) BS02 ZN 3.5.2.3 GO:0004151 ... Q0PBP6 N/A
    103120 3pnu:B (2.4) BS01 ZN 3.5.2.3 GO:0004151 ... Q0PBP6 N/A
    103121 3pnu:B (2.4) BS02 ZN 3.5.2.3 GO:0004151 ... Q0PBP6 N/A
    103122 3po2:A (3.3) BS01 dna 2.7.7.6 GO:0000428 ... P04050 21346759
    103123 3po2:A (3.3) BS02 rna 2.7.7.6 GO:0000428 ... P04050 21346759
    103124 3po2:A (3.3) BS03 dna 2.7.7.6 GO:0000428 ... P04050 21346759
    103125 3po2:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 21346759
    103126 3po2:A (3.3) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 21346759
    103127 3po2:A (3.3) BS06 MG 2.7.7.6 GO:0000428 ... P04050 21346759
    103128 3po2:B (3.3) BS01 dna 2.7.7.6 GO:0000428 ... P08518 21346759
    103129 3po2:B (3.3) BS02 rna 2.7.7.6 GO:0000428 ... P08518 21346759
    103130 3po2:B (3.3) BS03 dna 2.7.7.6 GO:0000428 ... P08518 21346759
    103131 3po2:B (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 21346759
    103132 3po2:C (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 21346759
    103133 3po2:I (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 21346759
    103134 3po2:I (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 21346759
    103135 3po2:J (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 21346759
    103136 3po2:L (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 21346759
    103137 3po3:A (3.3) BS01 dna 2.7.7.6 GO:0000428 ... P04050 21346759
    103138 3po3:A (3.3) BS02 dna 2.7.7.6 GO:0000428 ... P04050 21346759
    103139 3po3:A (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 21346759
    103140 3po3:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 21346759
    103141 3po3:A (3.3) BS05 MG 2.7.7.6 GO:0000428 ... P04050 21346759
    103142 3po3:B (3.3) BS01 rna 2.7.7.6 GO:0000428 ... P08518 21346759
    103143 3po3:B (3.3) BS02 dna 2.7.7.6 GO:0000428 ... P08518 21346759
    103144 3po3:B (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 21346759
    103145 3po3:C (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 21346759
    103146 3po3:I (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 21346759
    103147 3po3:I (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 21346759
    103148 3po3:J (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 21346759
    103149 3po3:L (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 21346759
    103150 3po3:S (3.3) BS01 ZN ? GO:0003676 ... P07273 21346759
    103151 3po6:A (1.47) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21395315
    103152 3po6:A (1.47) BS02 DT9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21395315 PDBbind: -logKd/Ki=7.06, Ki=87.3nM
    103153 3po6:A (1.47) BS03 RDT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21395315
    103154 3po7:A (1.8) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 21175212
    103155 3po7:A (1.8) BS02 ZON 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 21175212 MOAD: Ki=3.1uM
    BindingDB: Ki=3100nM
    103156 3po7:B (1.8) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 21175212
    103157 3po7:B (1.8) BS02 ZON 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 21175212 MOAD: Ki=3.1uM
    BindingDB: Ki=3100nM
    103158 3po9:A (2.35) BS01 XPT ? GO:0003677 ... P37231 N/A
    103159 3po9:B (2.35) BS01 XPT ? GO:0003677 ... P37231 N/A
    103160 3poo:A (1.6) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 N/A
    103161 3poo:A (1.6) BS02 S69 2.7.11.11 GO:0000287 ... P17612 N/A
    103162 3poo:A (1.6) BS03 BUD 2.7.11.11 GO:0000287 ... P17612 N/A
    103163 3por:A (2.5) BS01 C8E ? GO:0006811 ... P31243 7685826
    103164 3pos:A (1.65) BS01 CA ? GO:0005509 ... P27797 21423620
    103165 3pos:B (1.65) BS01 CA ? GO:0005509 ... P27797 21423620
    103166 3pos:C (1.65) BS01 CA ? GO:0005509 ... P27797 21423620
    103167 3pot:A (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    103168 3pot:A (1.2) BS02 COM 2.8.4.1 GO:0005737 ... P11558 21438550
    103169 3pot:A (1.2) BS03 TXZ 2.8.4.1 GO:0005737 ... P11558 21438550
    103170 3pot:A (1.2) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    103171 3pot:A (1.2) BS05 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    103172 3pot:A (1.2) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    103173 3pot:A (1.2) BS07 TXZ 2.8.4.1 GO:0005737 ... P11558 21438550
    103174 3pot:B (1.2) BS01 COM 2.8.4.1 GO:0005737 ... P11560 21438550
    103175 3pot:B (1.2) BS02 TXZ 2.8.4.1 GO:0005737 ... P11560 21438550
    103176 3pot:B (1.2) BS03 TP7 2.8.4.1 GO:0005737 ... P11560 21438550
    103177 3pot:B (1.2) BS04 F43 2.8.4.1 GO:0005737 ... P11560 21438550
    103178 3pot:C (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11562 21438550
    103179 3pot:D (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    103180 3pot:D (1.2) BS02 TXZ 2.8.4.1 GO:0005737 ... P11558 21438550
    103181 3pot:D (1.2) BS03 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    103182 3pot:D (1.2) BS04 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    103183 3pot:D (1.2) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 21438550
    103184 3pot:D (1.2) BS06 TXZ 2.8.4.1 GO:0005737 ... P11558 21438550
    103185 3pot:D (1.2) BS07 COM 2.8.4.1 GO:0005737 ... P11558 21438550
    103186 3pot:D (1.2) BS08 06C 2.8.4.1 GO:0005737 ... P11558 21438550
    103187 3pot:E (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11560 21438550
    103188 3pot:E (1.2) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 21438550
    103189 3pot:E (1.2) BS03 TXZ 2.8.4.1 GO:0005737 ... P11560 21438550
    103190 3pot:E (1.2) BS04 COM 2.8.4.1 GO:0005737 ... P11560 21438550
    103191 3pot:F (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11562 21438550
    103192 3pov:A (2.5) BS01 dna ? GO:0003677 ... P88925 21421561 PDBbind: Kd=6uM
    103193 3pov:A (2.5) BS02 dna ? GO:0003677 ... P88925 21421561 PDBbind: Kd=6uM
    103194 3pov:A (2.5) BS03 MG ? GO:0003677 ... P88925 21421561
    103195 3pov:A (2.5) BS04 MG ? GO:0003677 ... P88925 21421561
    103196 3pow:A (1.55) BS01 CA ? GO:0005509 ... P27797 21423620
    103197 3pp5:A (1.5) BS01 CA ? GO:0000281 ... Q54X65 21701600
    103198 3pp5:A (1.5) BS02 CA ? GO:0000281 ... Q54X65 21701600
    103199 3pp6:A (1.9) BS01 PAM ? GO:0005504 ... C4N147 22948910
    103200 3pp6:B (1.9) BS01 PAM ? GO:0005504 ... C4N147 22948910
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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