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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    87401 3i4d:M (2.01) BS04 UQ1 ? GO:0009772 ... P0C0Y9 N/A
    87402 3i4d:M (2.01) BS05 BCL ? GO:0009772 ... P0C0Y9 N/A
    87403 3i4d:M (2.01) BS06 BCL ? GO:0009772 ... P0C0Y9 N/A
    87404 3i4d:M (2.01) BS07 BPH ? GO:0009772 ... P0C0Y9 N/A
    87405 3i4d:M (2.01) BS08 FE ? GO:0009772 ... P0C0Y9 N/A
    87406 3i4d:M (2.01) BS09 U10 ? GO:0009772 ... P0C0Y9 N/A
    87407 3i4d:M (2.01) BS10 SPO ? GO:0009772 ... P0C0Y9 N/A
    87408 3i4l:A (2.4) BS01 ANP 3.1.-.-
    7.1.2.2    		 GO:0005524 ... O57728 19944110
    87409 3i4m:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 19758983
    87410 3i4m:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 19758983
    87411 3i4m:A (3.7) BS03 MG 2.7.7.6 GO:0000428 ... P04050 19758983
    87412 3i4m:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 19758983
    87413 3i4m:A (3.7) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 19758983
    87414 3i4m:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 19758983
    87415 3i4m:B (3.7) BS02 dna 2.7.7.6 GO:0000428 ... P08518 19758983
    87416 3i4m:B (3.7) BS03 rna 2.7.7.6 GO:0000428 ... P08518 19758983
    87417 3i4m:B (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 19758983
    87418 3i4m:C (3.7) BS01 ZN ? GO:0000428 ... P16370 19758983
    87419 3i4m:I (3.7) BS01 ZN ? GO:0000428 ... P27999 19758983
    87420 3i4m:I (3.7) BS02 ZN ? GO:0000428 ... P27999 19758983
    87421 3i4m:J (3.7) BS01 ZN ? GO:0000428 ... P22139 19758983
    87422 3i4m:L (3.7) BS01 ZN ? GO:0000428 ... P40422 19758983
    87423 3i4n:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... P04050 19758983
    87424 3i4n:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... P04050 19758983
    87425 3i4n:A (3.9) BS03 MG 2.7.7.6 GO:0000428 ... P04050 19758983
    87426 3i4n:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 19758983
    87427 3i4n:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 19758983
    87428 3i4n:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... P08518 19758983
    87429 3i4n:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... P08518 19758983
    87430 3i4n:B (3.9) BS03 rna 2.7.7.6 GO:0000428 ... P08518 19758983
    87431 3i4n:B (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 19758983
    87432 3i4n:C (3.9) BS01 ZN ? GO:0000428 ... P16370 19758983
    87433 3i4n:I (3.9) BS01 ZN ? GO:0000428 ... P27999 19758983
    87434 3i4n:J (3.9) BS01 ZN ? GO:0000428 ... P22139 19758983
    87435 3i4n:L (3.9) BS01 ZN ? GO:0000428 ... P40422 19758983
    87436 3i54:A (2.2) BS01 CMP ? GO:0003677 ... P9WMH3 19740754
    87437 3i54:B (2.2) BS01 CMP ? GO:0003677 ... P9WMH3 19740754
    87438 3i54:C (2.2) BS01 CMP ? GO:0003677 ... P9WMH3 19740754
    87439 3i54:D (2.2) BS01 CMP ? GO:0003677 ... P9WMH3 19740754
    87440 3i55:1 (3.11) BS01 rna ? GO:0003723 ... P32410 19738021
    87441 3i55:2 (3.11) BS01 rna ? GO:0003735 ... P22452 19738021
    87442 3i55:3 (3.11) BS01 rna ? GO:0000049 ... P32411 19738021
    87443 3i55:3 (3.11) BS02 MYL ? GO:0000049 ... P32411 19738021
    87444 3i55:A (3.11) BS01 rna ? GO:0002181 ... P20276 19738021
    87445 3i55:A (3.11) BS02 MG ? GO:0002181 ... P20276 19738021
    87446 3i55:A (3.11) BS03 MG ? GO:0002181 ... P20276 19738021
    87447 3i55:B (3.11) BS01 rna ? GO:0003723 ... P20279 19738021
    87448 3i55:C (3.11) BS01 rna ? GO:0003723 ... P12735 19738021
    87449 3i55:D (3.11) BS01 rna ? GO:0000049 ... P14124 19738021
    87450 3i55:D (3.11) BS02 rna ? GO:0000049 ... P14124 19738021
    87451 3i55:E (3.11) BS01 rna ? GO:0002181 ... P14135 19738021
    87452 3i55:F (3.11) BS01 rna ? GO:0001682 ... P12743 19738021
    87453 3i55:H (3.11) BS01 rna ? GO:0000027 ... P60617 19738021
    87454 3i55:I (3.11) BS01 rna ? GO:0003735 ... P14122 19738021
    87455 3i55:J (3.11) BS01 rna ? GO:0003729 ... P29198 19738021
    87456 3i55:K (3.11) BS01 rna ? GO:0003735 ... P22450 19738021
    87457 3i55:L (3.11) BS01 rna ? GO:0003735 ... P12737 19738021
    87458 3i55:M (3.11) BS01 rna ? GO:0002181 ... P60618 19738021
    87459 3i55:N (3.11) BS01 rna ? GO:0000027 ... P14123 19738021
    87460 3i55:N (3.11) BS02 rna ? GO:0000027 ... P14123 19738021
    87461 3i55:O (3.11) BS01 rna ? GO:0003723 ... P12733 19738021
    87462 3i55:P (3.11) BS01 rna ? GO:0003723 ... P14119 19738021
    87463 3i55:Q (3.11) BS01 rna ? GO:0003735 ... P12734 19738021
    87464 3i55:Q (3.11) BS02 rna ? GO:0003735 ... P12734 19738021
    87465 3i55:R (3.11) BS01 rna ? GO:0002181 ... P10970 19738021
    87466 3i55:S (3.11) BS01 rna ? GO:0000027 ... P12732 19738021
    87467 3i55:T (3.11) BS01 rna ? GO:0002181 ... P10972 19738021
    87468 3i55:T (3.11) BS02 MG ? GO:0002181 ... P10972 19738021
    87469 3i55:U (3.11) BS01 rna ? GO:0003735 ... P14116 19738021
    87470 3i55:V (3.11) BS01 rna ? GO:0003735 ... P10971 19738021
    87471 3i55:W (3.11) BS01 rna ? GO:0000463 ... P14121 19738021
    87472 3i55:W (3.11) BS02 rna ? GO:0000463 ... P14121 19738021
    87473 3i55:X (3.11) BS01 rna ? GO:0002181 ... P18138 19738021
    87474 3i55:Y (3.11) BS01 rna ? GO:0000166 ... P12736 19738021
    87475 3i55:Y (3.11) BS02 MG ? GO:0000166 ... P12736 19738021
    87476 3i55:Z (3.11) BS01 rna ? GO:0003735 ... P60619 19738021
    87477 3i56:1 (2.9) BS01 rna ? GO:0003723 ... P32410 19738021
    87478 3i56:2 (2.9) BS01 rna ? GO:0003735 ... P22452 19738021
    87479 3i56:3 (2.9) BS01 rna ? GO:0000049 ... P32411 19738021
    87480 3i56:A (2.9) BS01 rna ? GO:0002181 ... P20276 19738021
    87481 3i56:A (2.9) BS02 MG ? GO:0002181 ... P20276 19738021
    87482 3i56:A (2.9) BS03 MG ? GO:0002181 ... P20276 19738021
    87483 3i56:B (2.9) BS01 rna ? GO:0003723 ... P20279 19738021
    87484 3i56:C (2.9) BS01 rna ? GO:0003723 ... P12735 19738021
    87485 3i56:D (2.9) BS01 rna ? GO:0000049 ... P14124 19738021
    87486 3i56:D (2.9) BS02 rna ? GO:0000049 ... P14124 19738021
    87487 3i56:E (2.9) BS01 rna ? GO:0002181 ... P14135 19738021
    87488 3i56:F (2.9) BS01 rna ? GO:0001682 ... P12743 19738021
    87489 3i56:H (2.9) BS01 rna ? GO:0000027 ... P60617 19738021
    87490 3i56:I (2.9) BS01 rna ? GO:0003735 ... P14122 19738021
    87491 3i56:J (2.9) BS01 rna ? GO:0003729 ... P29198 19738021
    87492 3i56:K (2.9) BS01 rna ? GO:0003735 ... P22450 19738021
    87493 3i56:L (2.9) BS01 rna ? GO:0003735 ... P12737 19738021
    87494 3i56:M (2.9) BS01 rna ? GO:0002181 ... P60618 19738021
    87495 3i56:N (2.9) BS01 rna ? GO:0000027 ... P14123 19738021
    87496 3i56:N (2.9) BS02 rna ? GO:0000027 ... P14123 19738021
    87497 3i56:O (2.9) BS01 rna ? GO:0003723 ... P12733 19738021
    87498 3i56:P (2.9) BS01 rna ? GO:0003723 ... P14119 19738021
    87499 3i56:Q (2.9) BS01 rna ? GO:0003735 ... P12734 19738021
    87500 3i56:Q (2.9) BS02 rna ? GO:0003735 ... P12734 19738021
    87501 3i56:R (2.9) BS01 rna ? GO:0002181 ... P10970 19738021
    87502 3i56:S (2.9) BS01 rna ? GO:0000027 ... P12732 19738021
    87503 3i56:T (2.9) BS01 rna ? GO:0002181 ... P10972 19738021
    87504 3i56:T (2.9) BS02 MG ? GO:0002181 ... P10972 19738021
    87505 3i56:U (2.9) BS01 rna ? GO:0003735 ... P14116 19738021
    87506 3i56:V (2.9) BS01 rna ? GO:0003735 ... P10971 19738021
    87507 3i56:W (2.9) BS01 rna ? GO:0000463 ... P14121 19738021
    87508 3i56:W (2.9) BS02 rna ? GO:0000463 ... P14121 19738021
    87509 3i56:X (2.9) BS01 rna ? GO:0002181 ... P18138 19738021
    87510 3i56:Y (2.9) BS01 rna ? GO:0000166 ... P12736 19738021
    87511 3i56:Y (2.9) BS02 MG ? GO:0000166 ... P12736 19738021
    87512 3i56:Z (2.9) BS01 rna ? GO:0003735 ... P60619 19738021
    87513 3i59:A (2.29) BS01 N6R ? GO:0003677 ... P9WMH3 19740754
    87514 3i59:A (2.29) BS02 N6S ? GO:0003677 ... P9WMH3 19740754
    87515 3i59:B (2.29) BS01 N6S ? GO:0003677 ... P9WMH3 19740754
    87516 3i5a:A (2.796) BS01 C2E 2.7.7.65 GO:0000160 ... Q886S7 19695263
    87517 3i5a:A (2.796) BS02 C2E 2.7.7.65 GO:0000160 ... Q886S7 19695263
    87518 3i5f:A (3.1) BS01 MG ? GO:0003774 ... O44934 17502101
    87519 3i5f:A (3.1) BS02 ADP ? GO:0003774 ... O44934 17502101
    87520 3i5g:C (2.6) BS01 CA ? GO:0005509 ... P05945 17502101
    87521 3i5h:C (3.4) BS01 CA ? GO:0005509 ... P05945 17502101
    87522 3i5i:C (3.3) BS01 CA ? GO:0005509 ... P05945 17502101
    87523 3i5o:A (1.5) BS01 BGC ? GO:0015833 ... Q9WXN8 19801540
    87524 3i5o:A (1.5) BS02 BGC ? GO:0015833 ... Q9WXN8 19801540
    87525 3i5o:A (1.5) BS03 BGC ? GO:0015833 ... Q9WXN8 19801540
    87526 3i5o:A (1.5) BS04 BGC ? GO:0015833 ... Q9WXN8 19801540
    87527 3i5o:A (1.5) BS05 BGC ? GO:0015833 ... Q9WXN8 19801540
    87528 3i5o:B (1.5) BS01 BGC ? GO:0015833 ... Q9WXN8 19801540
    87529 3i5o:B (1.5) BS02 BGC ? GO:0015833 ... Q9WXN8 19801540
    87530 3i5o:B (1.5) BS03 BGC ? GO:0015833 ... Q9WXN8 19801540
    87531 3i5o:B (1.5) BS04 BGC ? GO:0015833 ... Q9WXN8 19801540
    87532 3i5z:A (2.2) BS01 Z48 2.7.11.24 GO:0000165 ... P28482 19827834 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=4nM
    87533 3i60:A (2.5) BS01 E86 2.7.11.24 GO:0000165 ... P28482 19827834 MOAD: Ki<2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=<2nM
    87534 3i65:A (2.0) BS01 JZ8 1.3.5.2 GO:0004152 ... Q08210 19640844 MOAD: ic50=0.047uM
    87535 3i65:A (2.0) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 19640844
    87536 3i68:A (2.4) BS01 J4Z 1.3.5.2 GO:0004152 ... Q08210 19640844 MOAD: ic50=0.056uM
    BindingDB: IC50=56nM
    87537 3i68:A (2.4) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 19640844
    87538 3i69:A (2.38) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87539 3i69:B (2.38) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87540 3i69:C (2.38) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87541 3i69:D (2.38) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87542 3i6a:A (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87543 3i6a:A (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87544 3i6a:B (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87545 3i6a:B (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87546 3i6a:C (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87547 3i6a:C (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87548 3i6a:D (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87549 3i6a:D (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87550 3i6a:E (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87551 3i6a:E (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87552 3i6a:F (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87553 3i6a:F (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87554 3i6a:G (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87555 3i6a:G (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87556 3i6a:H (1.98) BS01 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87557 3i6a:H (1.98) BS02 GSH 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 19618965
    87558 3i6d:A (2.9) BS01 FAD 1.3.3.15 GO:0004729 ... P32397 19944166
    87559 3i6d:A (2.9) BS02 ACJ 1.3.3.15 GO:0004729 ... P32397 19944166
    87560 3i6d:B (2.9) BS01 FAD 1.3.3.15 GO:0004729 ... P32397 19944166
    87561 3i6d:B (2.9) BS02 ACJ 1.3.3.15 GO:0004729 ... P32397 19944166
    87562 3i6m:A (2.26) BS01 G3X 3.1.1.7 GO:0001507 ... P04058 20025280 PDBbind: -logKd/Ki=6.46, IC50=0.35uM
    87563 3i6r:A (2.5) BS01 J5Z 1.3.5.2 GO:0004152 ... Q08210 19640844 MOAD: ic50=0.28uM
    BindingDB: IC50=280nM
    87564 3i6r:A (2.5) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 19640844
    87565 3i6v:A (2.0) BS01 LYS ? GO:0015276 ... Q5LTV6 N/A
    87566 3i6y:A (1.75) BS01 CL 3.1.2.12 GO:0005829 ... D0VWZ4 22519667
    87567 3i6y:B (1.75) BS01 CL 3.1.2.12 GO:0005829 ... D0VWZ4 22519667
    87568 3i6z:A (2.19) BS01 G6X 3.1.1.7 GO:0001507 ... P04058 20025280 PDBbind: -logKd/Ki=7.30, IC50=0.05uM
    87569 3i73:A (2.4) BS01 ADP 3.1.-.-
    7.1.2.2    		 GO:0005524 ... O57728 19944110 MOAD: Kd=3.23uM
    PDBbind: -logKd/Ki=5.49, Kd=3.23uM
    87570 3i7b:A (1.988) BS01 BK1 2.7.11.17 GO:0004672 ... Q9BJF5 20436472 MOAD: ic50=0.066uM
    PDBbind: -logKd/Ki=7.18, IC50=0.066uM
    BindingDB: IC50=128nM
    87571 3i7c:A (1.98) BS01 BK2 2.7.11.17 GO:0004672 ... Q9BJF5 20436472 MOAD: ic50=0.018uM
    PDBbind: -logKd/Ki=7.74, IC50=0.018uM
    BindingDB: IC50=15.0nM
    87572 3i7g:A (1.95) BS01 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87573 3i7g:A (1.95) BS02 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87574 3i7g:A (1.95) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87575 3i7g:A (1.95) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87576 3i7g:A (1.95) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87577 3i7g:A (1.95) BS06 732 3.4.24.- GO:0004222 ... P45452 19692239 MOAD: ic50=430nM
    PDBbind: -logKd/Ki=6.37, IC50=430nM
    BindingDB: IC50=430nM
    87578 3i7g:B (1.95) BS01 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87579 3i7g:B (1.95) BS02 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87580 3i7g:B (1.95) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87581 3i7g:B (1.95) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87582 3i7g:B (1.95) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87583 3i7h:A (2.9) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87584 3i7i:A (2.208) BS01 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87585 3i7i:A (2.208) BS02 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87586 3i7i:A (2.208) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87587 3i7i:A (2.208) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87588 3i7i:A (2.208) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87589 3i7i:A (2.208) BS06 518 3.4.24.- GO:0004222 ... P45452 19692239 MOAD: ic50=620nM
    PDBbind: -logKd/Ki=6.21, IC50=620nM
    BindingDB: IC50=620nM
    87590 3i7i:B (2.208) BS01 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87591 3i7i:B (2.208) BS02 ZN 3.4.24.- GO:0004222 ... P45452 19692239
    87592 3i7i:B (2.208) BS03 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87593 3i7i:B (2.208) BS04 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87594 3i7i:B (2.208) BS05 CA 3.4.24.- GO:0004222 ... P45452 19692239
    87595 3i7k:A (2.8) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87596 3i7l:A (2.8) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87597 3i7n:A (2.8) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87598 3i7o:A (2.8) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87599 3i7p:A (3.0) BS01 peptide ? GO:0000781 ... Q16531 19966799
    87600 3i7s:A (2.3) BS01 PYR 4.3.3.7 GO:0005737 ... P0A6L2 20353808 MOAD: Kd=0.0299mM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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