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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    78001 3ckg:A (1.8) BS01 MG ? GO:0009279 ... Q45040 18842042
    78002 3ckl:A (2.0) BS01 STL 2.8.2.1 GO:0004062 ... O43704 N/A
    78003 3ckl:A (2.0) BS02 A3P 2.8.2.1 GO:0004062 ... O43704 N/A
    78004 3ckl:B (2.0) BS01 STL 2.8.2.1 GO:0004062 ... O43704 N/A
    78005 3ckl:B (2.0) BS02 A3P 2.8.2.1 GO:0004062 ... O43704 N/A
    78006 3ckp:A (2.3) BS01 012 3.4.23.46 GO:0004190 ... P56817 18434152 MOAD: Ki=0.449uM
    PDBbind: -logKd/Ki=6.35, Ki=0.449uM
    78007 3ckp:B (2.3) BS01 012 3.4.23.46 GO:0004190 ... P56817 18434152 MOAD: Ki=0.449uM
    78008 3ckp:C (2.3) BS01 012 3.4.23.46 GO:0004190 ... P56817 18434152 MOAD: Ki=0.449uM
    78009 3ckr:A (2.7) BS01 009 3.4.23.46 GO:0004190 ... P56817 18434152 PDBbind: -logKd/Ki=5.30, Ki=5.001uM
    78010 3ckr:B (2.7) BS01 009 3.4.23.46 GO:0004190 ... P56817 18434152
    78011 3ckr:C (2.7) BS01 009 3.4.23.46 GO:0004190 ... P56817 18434152
    78012 3cks:A (1.7) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 18375516
    78013 3cks:A (1.7) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 18375516
    78014 3cku:A (1.7) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 18375516
    78015 3ckz:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78016 3ckz:A (1.9) BS02 ZMR 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=8.72, Ki=1.9nM
    78017 3cl0:A (2.2) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 MOAD: Ki=84.8nM
    PDBbind: -logKd/Ki=7.07, Ki=84.8nM
    78018 3cl0:A (2.2) BS02 CA 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78019 3cl2:A (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 PDBbind: -logKd/Ki=7.59, Ki=25.9nM
    78020 3cl2:B (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78021 3cl2:C (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78022 3cl2:D (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78023 3cl2:E (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78024 3cl2:F (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78025 3cl2:G (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78026 3cl2:H (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754
    78027 3cl5:A (1.8) BS01 SIO 3.1.1.53 GO:0001681 ... P15776 18550812
    78028 3cl9:A (3.3) BS01 NAP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78029 3cl9:A (3.3) BS02 MTX 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78030 3cl9:A (3.3) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78031 3clb:A (3.0) BS01 NAP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78032 3clb:A (3.0) BS02 TMQ 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78033 3clb:B (3.0) BS01 NAP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78034 3clb:B (3.0) BS02 TMQ 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78035 3clb:C (3.0) BS01 NAP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78036 3clb:C (3.0) BS02 TMQ 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78037 3clb:D (3.0) BS01 NAP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78038 3clb:D (3.0) BS02 TMQ 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 18536013
    78039 3clc:A (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 18644840
    78040 3clc:A (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 18644840
    78041 3clc:B (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 18644840
    78042 3clc:B (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 18644840
    78043 3clc:C (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 18644840
    78044 3clc:C (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 18644840
    78045 3clc:D (2.8) BS01 dna ? GO:0003677 ... Q8GGH0 18644840
    78046 3clc:D (2.8) BS02 dna ? GO:0003677 ... Q8GGH0 18644840
    78047 3clh:A (2.4) BS01 NAD 4.2.3.4 GO:0000166 ... P56081 18503755
    78048 3clh:B (2.4) BS01 NAD 4.2.3.4 GO:0000166 ... P56081 18503755
    78049 3cli:A (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    78050 3cli:B (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q96242 18716621
    78051 3cln:A (2.2) BS01 CA ? GO:0000086 ... P0DP29 3145979
    78052 3cln:A (2.2) BS02 CA ? GO:0000086 ... P0DP29 3145979
    78053 3cln:A (2.2) BS03 CA ? GO:0000086 ... P0DP29 3145979
    78054 3cln:A (2.2) BS04 CA ? GO:0000086 ... P0DP29 3145979
    78055 3cm5:A (2.81) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 18981218
    78056 3cm5:A (2.81) BS02 MN 3.1.-.- GO:0000175 ... Q10905 18981218
    78057 3cm5:B (2.81) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 18981218
    78058 3cm5:B (2.81) BS02 MN 3.1.-.- GO:0000175 ... Q10905 18981218
    78059 3cm6:A (2.6) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 18981218
    78060 3cm6:A (2.6) BS02 ER3 3.1.-.- GO:0000175 ... Q10905 18981218
    78061 3cm6:B (2.6) BS01 ZN 3.1.-.- GO:0000175 ... Q10905 18981218
    78062 3cm6:B (2.6) BS02 ER3 3.1.-.- GO:0000175 ... Q10905 18981218
    78063 3cma:1 (2.8) BS01 rna ? GO:0003723 ... P32410 18818369
    78064 3cma:2 (2.8) BS01 rna ? GO:0003735 ... P22452 18818369
    78065 3cma:3 (2.8) BS01 rna ? GO:0000049 ... P32411 18818369
    78066 3cma:A (2.8) BS01 rna ? GO:0002181 ... P20276 18818369
    78067 3cma:A (2.8) BS02 MG ? GO:0002181 ... P20276 18818369
    78068 3cma:A (2.8) BS03 MG ? GO:0002181 ... P20276 18818369
    78069 3cma:B (2.8) BS01 rna ? GO:0003723 ... P20279 18818369
    78070 3cma:C (2.8) BS01 rna ? GO:0003723 ... P12735 18818369
    78071 3cma:D (2.8) BS01 rna ? GO:0000049 ... P14124 18818369
    78072 3cma:D (2.8) BS02 rna ? GO:0000049 ... P14124 18818369
    78073 3cma:E (2.8) BS01 rna ? GO:0002181 ... P14135 18818369
    78074 3cma:F (2.8) BS01 rna ? GO:0001682 ... P12743 18818369
    78075 3cma:H (2.8) BS01 rna ? GO:0000027 ... P60617 18818369
    78076 3cma:H (2.8) BS02 rna ? GO:0000027 ... P60617 18818369
    78077 3cma:I (2.8) BS01 rna ? GO:0003735 ... P14122 18818369
    78078 3cma:J (2.8) BS01 rna ? GO:0003729 ... P29198 18818369
    78079 3cma:K (2.8) BS01 rna ? GO:0003735 ... P22450 18818369
    78080 3cma:L (2.8) BS01 rna ? GO:0003735 ... P12737 18818369
    78081 3cma:M (2.8) BS01 rna ? GO:0002181 ... P60618 18818369
    78082 3cma:N (2.8) BS01 rna ? GO:0000027 ... P14123 18818369
    78083 3cma:N (2.8) BS02 rna ? GO:0000027 ... P14123 18818369
    78084 3cma:O (2.8) BS01 rna ? GO:0003723 ... P12733 18818369
    78085 3cma:P (2.8) BS01 rna ? GO:0003723 ... P14119 18818369
    78086 3cma:Q (2.8) BS01 rna ? GO:0003735 ... P12734 18818369
    78087 3cma:Q (2.8) BS02 rna ? GO:0003735 ... P12734 18818369
    78088 3cma:R (2.8) BS01 rna ? GO:0002181 ... P10970 18818369
    78089 3cma:S (2.8) BS01 rna ? GO:0000027 ... P12732 18818369
    78090 3cma:T (2.8) BS01 rna ? GO:0002181 ... P10972 18818369
    78091 3cma:T (2.8) BS02 MG ? GO:0002181 ... P10972 18818369
    78092 3cma:U (2.8) BS01 rna ? GO:0003735 ... P14116 18818369
    78093 3cma:V (2.8) BS01 rna ? GO:0003735 ... P10971 18818369
    78094 3cma:W (2.8) BS01 rna ? GO:0000463 ... P14121 18818369
    78095 3cma:W (2.8) BS02 rna ? GO:0000463 ... P14121 18818369
    78096 3cma:X (2.8) BS01 rna ? GO:0002181 ... P18138 18818369
    78097 3cma:Y (2.8) BS01 rna ? GO:0000166 ... P12736 18818369
    78098 3cma:Y (2.8) BS02 MG ? GO:0000166 ... P12736 18818369
    78099 3cma:Z (2.8) BS01 rna ? GO:0003735 ... P60619 18818369
    78100 3cmc:O (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    78101 3cmc:O (1.77) BS02 NAD 1.2.1.12 GO:0000166 ... P00362 18480053
    78102 3cmc:P (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    78103 3cmc:P (1.77) BS02 NAD 1.2.1.12 GO:0000166 ... P00362 18480053
    78104 3cmc:Q (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    78105 3cmc:Q (1.77) BS02 NAD 1.2.1.12 GO:0000166 ... P00362 18480053
    78106 3cmc:R (1.77) BS01 G3H 1.2.1.12 GO:0000166 ... P00362 18480053
    78107 3cmc:R (1.77) BS02 NAD 1.2.1.12 GO:0000166 ... P00362 18480053
    78108 3cme:1 (2.95) BS01 rna ? GO:0003723 ... P32410 18818369
    78109 3cme:2 (2.95) BS01 rna ? GO:0003735 ... P22452 18818369
    78110 3cme:3 (2.95) BS01 rna ? GO:0000049 ... P32411 18818369
    78111 3cme:A (2.95) BS01 rna ? GO:0002181 ... P20276 18818369
    78112 3cme:A (2.95) BS02 MG ? GO:0002181 ... P20276 18818369
    78113 3cme:A (2.95) BS03 MG ? GO:0002181 ... P20276 18818369
    78114 3cme:B (2.95) BS01 rna ? GO:0003723 ... P20279 18818369
    78115 3cme:C (2.95) BS01 rna ? GO:0003723 ... P12735 18818369
    78116 3cme:D (2.95) BS01 rna ? GO:0000049 ... P14124 18818369
    78117 3cme:D (2.95) BS02 rna ? GO:0000049 ... P14124 18818369
    78118 3cme:E (2.95) BS01 rna ? GO:0002181 ... P14135 18818369
    78119 3cme:F (2.95) BS01 rna ? GO:0001682 ... P12743 18818369
    78120 3cme:H (2.95) BS01 rna ? GO:0000027 ... P60617 18818369
    78121 3cme:H (2.95) BS02 rna ? GO:0000027 ... P60617 18818369
    78122 3cme:I (2.95) BS01 rna ? GO:0003735 ... P14122 18818369
    78123 3cme:J (2.95) BS01 rna ? GO:0003729 ... P29198 18818369
    78124 3cme:K (2.95) BS01 rna ? GO:0003735 ... P22450 18818369
    78125 3cme:L (2.95) BS01 rna ? GO:0003735 ... P12737 18818369
    78126 3cme:M (2.95) BS01 rna ? GO:0002181 ... P60618 18818369
    78127 3cme:N (2.95) BS01 rna ? GO:0000027 ... P14123 18818369
    78128 3cme:N (2.95) BS02 rna ? GO:0000027 ... P14123 18818369
    78129 3cme:O (2.95) BS01 rna ? GO:0003723 ... P12733 18818369
    78130 3cme:P (2.95) BS01 rna ? GO:0003723 ... P14119 18818369
    78131 3cme:Q (2.95) BS01 rna ? GO:0003735 ... P12734 18818369
    78132 3cme:Q (2.95) BS02 rna ? GO:0003735 ... P12734 18818369
    78133 3cme:R (2.95) BS01 rna ? GO:0002181 ... P10970 18818369
    78134 3cme:S (2.95) BS01 rna ? GO:0000027 ... P12732 18818369
    78135 3cme:T (2.95) BS01 rna ? GO:0002181 ... P10972 18818369
    78136 3cme:T (2.95) BS02 MG ? GO:0002181 ... P10972 18818369
    78137 3cme:U (2.95) BS01 rna ? GO:0003735 ... P14116 18818369
    78138 3cme:V (2.95) BS01 rna ? GO:0003735 ... P10971 18818369
    78139 3cme:W (2.95) BS01 rna ? GO:0000463 ... P14121 18818369
    78140 3cme:W (2.95) BS02 rna ? GO:0000463 ... P14121 18818369
    78141 3cme:X (2.95) BS01 rna ? GO:0002181 ... P18138 18818369
    78142 3cme:Y (2.95) BS01 rna ? GO:0000166 ... P12736 18818369
    78143 3cme:Y (2.95) BS02 MG ? GO:0000166 ... P12736 18818369
    78144 3cme:Z (2.95) BS01 rna ? GO:0003735 ... P60619 18818369
    78145 3cmf:A (1.9) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    78146 3cmf:A (1.9) BS02 PDN 1.3.1.3 GO:0004032 ... P51857 18407998
    78147 3cmf:B (1.9) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18407998
    78148 3cmf:B (1.9) BS02 PDN 1.3.1.3 GO:0004032 ... P51857 18407998
    78149 3cmm:A (2.7) BS01 PRO 6.2.1.45 GO:0004839 ... P22515 18662542
    78150 3cmm:C (2.7) BS01 PRO 6.2.1.45 GO:0004839 ... P22515 18662542
    78151 3cmq:A (2.2) BS01 FA5 6.1.1.20 GO:0000049 ... O95363 18611382
    78152 3cmr:A (2.05) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 18627128
    78153 3cmr:A (2.05) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 18627128
    78154 3cmr:A (2.05) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 18627128
    78155 3cmr:A (2.05) BS04 MG 3.1.3.1 GO:0000287 ... P00634 18627128
    78156 3cmr:B (2.05) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 18627128
    78157 3cmr:B (2.05) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 18627128
    78158 3cmr:B (2.05) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 18627128
    78159 3cmr:B (2.05) BS04 MG 3.1.3.1 GO:0000287 ... P00634 18627128
    78160 3cmt:A (3.15) BS01 dna ? GO:0000725 ... P0A7G6 18497818
    78161 3cmt:A (3.15) BS02 dna ? GO:0000725 ... P0A7G6 18497818
    78162 3cmt:A (3.15) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    78163 3cmt:A (3.15) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    78164 3cmt:A (3.15) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    78165 3cmt:A (3.15) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    78166 3cmt:A (3.15) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    78167 3cmt:A (3.15) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    78168 3cmt:A (3.15) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    78169 3cmt:A (3.15) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    78170 3cmt:A (3.15) BS11 ALF ? GO:0000725 ... P0A7G6 18497818
    78171 3cmt:A (3.15) BS12 ADP ? GO:0000725 ... P0A7G6 18497818
    78172 3cmt:A (3.15) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    78173 3cmt:A (3.15) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    78174 3cmt:A (3.15) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    78175 3cmt:A (3.15) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    78176 3cmt:D (3.15) BS01 dna ? GO:0000725 ... P0A7G6 18497818
    78177 3cmt:D (3.15) BS02 dna ? GO:0000725 ... P0A7G6 18497818
    78178 3cmt:D (3.15) BS03 MG ? GO:0000725 ... P0A7G6 18497818
    78179 3cmt:D (3.15) BS04 ALF ? GO:0000725 ... P0A7G6 18497818
    78180 3cmt:D (3.15) BS05 MG ? GO:0000725 ... P0A7G6 18497818
    78181 3cmt:D (3.15) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    78182 3cmt:D (3.15) BS07 MG ? GO:0000725 ... P0A7G6 18497818
    78183 3cmt:D (3.15) BS08 ALF ? GO:0000725 ... P0A7G6 18497818
    78184 3cmt:D (3.15) BS09 MG ? GO:0000725 ... P0A7G6 18497818
    78185 3cmt:D (3.15) BS10 ALF ? GO:0000725 ... P0A7G6 18497818
    78186 3cmt:D (3.15) BS11 MG ? GO:0000725 ... P0A7G6 18497818
    78187 3cmt:D (3.15) BS12 ALF ? GO:0000725 ... P0A7G6 18497818
    78188 3cmt:D (3.15) BS13 ADP ? GO:0000725 ... P0A7G6 18497818
    78189 3cmt:D (3.15) BS14 ADP ? GO:0000725 ... P0A7G6 18497818
    78190 3cmt:D (3.15) BS15 ADP ? GO:0000725 ... P0A7G6 18497818
    78191 3cmt:D (3.15) BS16 ADP ? GO:0000725 ... P0A7G6 18497818
    78192 3cmt:D (3.15) BS17 ADP ? GO:0000725 ... P0A7G6 18497818
    78193 3cmu:A (4.2) BS01 dna ? GO:0000725 ... P0A7G6 18497818
    78194 3cmu:A (4.2) BS02 ALF ? GO:0000725 ... P0A7G6 18497818
    78195 3cmu:A (4.2) BS03 ALF ? GO:0000725 ... P0A7G6 18497818
    78196 3cmu:A (4.2) BS04 MG ? GO:0000725 ... P0A7G6 18497818
    78197 3cmu:A (4.2) BS05 ALF ? GO:0000725 ... P0A7G6 18497818
    78198 3cmu:A (4.2) BS06 ALF ? GO:0000725 ... P0A7G6 18497818
    78199 3cmu:A (4.2) BS07 ALF ? GO:0000725 ... P0A7G6 18497818
    78200 3cmu:A (4.2) BS08 MG ? GO:0000725 ... P0A7G6 18497818
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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