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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    77801 3cga:B (2.03) BS02 CA ? GO:0001837 ... P26447 18783790
    77802 3cgt:A (2.4) BS01 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    77803 3cgt:A (2.4) BS02 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    77804 3cgt:A (2.4) BS03 GLC 2.4.1.19 GO:0003824 ... P30920 9558324
    77805 3cgt:A (2.4) BS04 CA 2.4.1.19 GO:0003824 ... P30920 9558324
    77806 3cgt:A (2.4) BS05 CA 2.4.1.19 GO:0003824 ... P30920 9558324
    77807 3ch5:A (2.1) BS01 GDP 3.6.5.- GO:0000054 ... P62826 18611384
    77808 3ch6:A (2.35) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702
    77809 3ch6:A (2.35) BS02 311 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702 MOAD: ic50=0.1nM
    77810 3ch6:B (2.35) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702
    77811 3ch6:B (2.35) BS02 311 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702 MOAD: ic50=0.1nM
    77812 3ch6:D (2.35) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702
    77813 3ch6:D (2.35) BS02 311 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702 MOAD: ic50=0.1nM
    77814 3ch6:E (2.35) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702
    77815 3ch6:E (2.35) BS02 311 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 18485702 MOAD: ic50=0.1nM
    77816 3chb:D (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    77817 3chb:D (1.25) BS02 SIA ? GO:0005515 ... P01556 9753553
    77818 3chb:E (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    77819 3chb:E (1.25) BS02 SIA ? GO:0005515 ... P01556 9753553
    77820 3chb:F (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    77821 3chb:F (1.25) BS02 SIA ? GO:0005515 ... P01556 9753553
    77822 3chb:G (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    77823 3chb:G (1.25) BS02 SIA ? GO:0005515 ... P01556 9753553
    77824 3chb:H (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    77825 3chb:H (1.25) BS02 SIA ? GO:0005515 ... P01556 9753553
    77826 3chg:A (2.8) BS01 313 ? GO:0005886 ... P46922 18567662
    77827 3chg:B (2.8) BS01 313 ? GO:0005886 ... P46922 18567662
    77828 3chg:C (2.8) BS01 313 ? GO:0005886 ... P46922 18567662
    77829 3chg:D (2.8) BS01 313 ? GO:0005886 ... P46922 18567662 PDBbind: -logKd/Ki=3.99, Kd=102uM
    77830 3chj:A (1.6) BS01 CA ? GO:0005509 ... Q9NFS4 19046974
    77831 3chk:A (1.65) BS01 CA ? GO:0005509 ... Q9NFS4 19046974
    77832 3chk:A (1.65) BS02 CA ? GO:0005509 ... Q9NFS4 19046974
    77833 3chk:A (1.65) BS03 CA ? GO:0005509 ... Q9NFS4 19046974
    77834 3chk:A (1.65) BS04 CA ? GO:0005509 ... Q9NFS4 19046974
    77835 3chk:A (1.65) BS05 CA ? GO:0005509 ... Q9NFS4 19046974
    77836 3chl:A (1.9) BS01 MG ? GO:0005509 ... Q9NFS4 19046974
    77837 3cho:A (1.8) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906
    77838 3cho:A (1.8) BS02 4BG 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906 MOAD: ic50=280nM
    PDBbind: -logKd/Ki=6.55, IC50=280nM
    BindingDB: IC50=300nM
    77839 3chp:A (2.1) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906
    77840 3chp:A (2.1) BS02 4BO 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906 MOAD: ic50=5400nM
    PDBbind: -logKd/Ki=5.27, IC50=5400nM
    BindingDB: IC50=5400nM
    77841 3chq:A (2.09) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906
    77842 3chq:A (2.09) BS02 4BQ 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    77843 3chr:A (2.2) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906
    77844 3chr:A (2.2) BS02 4BS 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906 MOAD: ic50=61nM
    PDBbind: -logKd/Ki=7.21, IC50=61nM
    BindingDB: IC50=61nM
    77845 3chs:A (2.55) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906
    77846 3chs:A (2.55) BS02 4BU 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18394906 PDBbind: -logKd/Ki=7.77, IC50=17nM
    77847 3chw:A (2.3) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    77848 3chw:P (2.3) BS01 peptide ? GO:0000774 ... P07737 18689676
    77849 3chx:A (3.9) BS01 peptide ? GO:0016020 ... Q9KX50 18540635
    77850 3chx:A (3.9) BS02 CU ? GO:0016020 ... Q9KX50 18540635
    77851 3chx:B (3.9) BS01 peptide ? GO:0016020 ... Q50541 18540635
    77852 3chx:C (3.9) BS01 peptide ? GO:0016020 ... Q9KX51 18540635
    77853 3chx:C (3.9) BS02 CU ? GO:0016020 ... Q9KX51 18540635
    77854 3chx:E (3.9) BS01 peptide ? GO:0016020 ... Q9KX50 18540635
    77855 3chx:E (3.9) BS02 CU ? GO:0016020 ... Q9KX50 18540635
    77856 3chx:F (3.9) BS01 peptide ? GO:0016020 ... Q50541 18540635
    77857 3chx:G (3.9) BS01 peptide ? GO:0016020 ... Q9KX51 18540635
    77858 3chx:G (3.9) BS02 CU ? GO:0016020 ... Q9KX51 18540635
    77859 3chx:I (3.9) BS01 peptide ? GO:0016020 ... Q9KX50 18540635
    77860 3chx:I (3.9) BS02 CU ? GO:0016020 ... Q9KX50 18540635
    77861 3chx:J (3.9) BS01 peptide ? GO:0016020 ... Q50541 18540635
    77862 3chx:K (3.9) BS01 peptide ? GO:0016020 ... Q9KX51 18540635
    77863 3chx:K (3.9) BS02 CU ? GO:0016020 ... Q9KX51 18540635
    77864 3chy:A (1.66) BS01 SO4 ? GO:0000156 ... P0AE67 1869568
    77865 3chy:A (1.66) BS02 SO4 ? GO:0000156 ... P0AE67 1869568
    77866 3ci0:K (2.2) BS01 CA ? GO:0005886 ... Q8VLK7 18438417
    77867 3ci0:K (2.2) BS02 CA ? GO:0005886 ... Q8VLK7 18438417
    77868 3ci5:A (1.7) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    77869 3ci8:A (2.4) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    77870 3ci8:A (2.4) BS02 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    77871 3ci8:A (2.4) BS03 NIO 3.4.21.- GO:0005576 ... P24627 N/A
    77872 3cib:A (1.72) BS01 314 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    BindingDB: IC50=522nM
    77873 3cib:B (1.72) BS01 314 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=14nM
    BindingDB: IC50=522nM
    77874 3cic:A (1.75) BS01 316 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=300nM, Ki=3nM
    77875 3cic:B (1.75) BS01 316 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=3nM
    BindingDB: IC50=300nM, Ki=3nM
    77876 3cid:A (1.8) BS01 318 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5nM
    77877 3cid:B (1.8) BS01 318 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=5nM
    BindingDB: IC50=5nM
    77878 3cif:A (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77879 3cif:A (2.0) BS02 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77880 3cif:B (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77881 3cif:B (2.0) BS02 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77882 3cif:B (2.0) BS03 MG 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77883 3cif:C (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77884 3cif:C (2.0) BS02 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77885 3cif:D (2.0) BS01 G3H 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77886 3cif:D (2.0) BS02 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77887 3cif:D (2.0) BS03 MG 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    77888 3cij:A (1.07) BS01 WO4 ? GO:0005886 ... O30142 19234723
    77889 3cij:B (1.07) BS01 WO4 ? GO:0005886 ... O30142 19234723
    77890 3cik:A (2.75) BS01 MG 2.7.11.15 GO:0001664 ... P25098 20128603
    77891 3cip:A (1.6) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    77892 3ciq:A (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77893 3ciq:B (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77894 3ciq:C (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77895 3ciq:D (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77896 3ciq:E (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77897 3ciq:F (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77898 3ciq:G (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77899 3ciq:H (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77900 3ciq:I (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77901 3ciq:J (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77902 3ciq:K (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77903 3ciq:L (2.9) BS01 CU ? GO:0000139 ... P61769 19172750
    77904 3cir:A (3.65) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 18385138
    77905 3cir:B (3.65) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77906 3cir:B (3.65) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77907 3cir:B (3.65) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77908 3cir:M (3.65) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 18385138
    77909 3cir:N (3.65) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77910 3cir:N (3.65) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77911 3cir:N (3.65) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 18385138
    77912 3cis:A (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77913 3cis:A (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77914 3cis:B (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77915 3cis:B (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77916 3cis:C (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77917 3cis:C (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77918 3cis:D (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77919 3cis:D (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77920 3cis:E (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77921 3cis:E (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77922 3cis:F (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77923 3cis:F (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77924 3cis:G (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77925 3cis:G (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77926 3cis:H (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    77927 3cis:H (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    77928 3ciu:A (3.5) BS01 HEM ? GO:0004601 ... P01966 N/A
    77929 3ciu:B (3.5) BS01 HEM ? GO:0004601 ... P02070 N/A
    77930 3ciu:B (3.5) BS02 5DP ? GO:0004601 ... P02070 N/A
    77931 3ciu:C (3.5) BS01 HEM ? GO:0004601 ... P01966 N/A
    77932 3ciu:D (3.5) BS01 HEM ? GO:0004601 ... P02070 N/A
    77933 3cjb:A (3.21) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19015515
    77934 3cjc:A (3.9) BS01 CA 3.6.4.- GO:0000287 ... P68135 19015515
    77935 3cjc:A (3.9) BS02 ATP 3.6.4.- GO:0000287 ... P68135 19015515
    77936 3cjp:A (1.85) BS01 ZN ? GO:0005737 ... Q97DY3 N/A
    77937 3cjp:A (1.85) BS02 ZN ? GO:0005737 ... Q97DY3 N/A
    77938 3cjp:B (1.85) BS01 ZN ? GO:0005737 ... Q97DY3 N/A
    77939 3cjp:B (1.85) BS02 ZN ? GO:0005737 ... Q97DY3 N/A
    77940 3cjq:A (2.7) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77941 3cjq:A (2.7) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77942 3cjq:B (2.7) BS01 2MM ? GO:0003735 ... P36238 18611379
    77943 3cjq:D (2.7) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77944 3cjq:D (2.7) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77945 3cjq:E (2.7) BS01 2MM ? GO:0003735 ... P36238 18611379
    77946 3cjq:G (2.7) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77947 3cjq:G (2.7) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77948 3cjq:H (2.7) BS01 2MM ? GO:0003735 ... P36238 18611379
    77949 3cjr:A (2.05) BS01 SFG 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77950 3cjt:A (2.3) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77951 3cjt:A (2.3) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77952 3cjt:B (2.3) BS01 2MM ? GO:0003735 ... P36238 18611379
    77953 3cjt:C (2.3) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77954 3cjt:E (2.3) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77955 3cjt:E (2.3) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77956 3cjt:F (2.3) BS01 2MM ? GO:0003735 ... P36238 18611379
    77957 3cjt:G (2.3) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77958 3cjt:I (2.3) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77959 3cjt:I (2.3) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77960 3cjt:J (2.3) BS01 2MM ? GO:0003735 ... P36238 18611379
    77961 3cjt:K (2.3) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77962 3cjt:M (2.3) BS01 SAH 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77963 3cjt:M (2.3) BS02 2MM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77964 3cjt:N (2.3) BS01 2MM ? GO:0003735 ... P36238 18611379
    77965 3cjt:O (2.3) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 18611379
    77966 3ck0:L (3.0) BS01 peptide ? GO:0005576 ... P01837 N/A
    77967 3ck7:A (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77968 3ck7:A (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77969 3ck7:A (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77970 3ck7:B (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77971 3ck7:B (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77972 3ck7:B (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77973 3ck7:C (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77974 3ck7:C (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77975 3ck7:C (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77976 3ck7:D (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77977 3ck7:D (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77978 3ck7:D (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77979 3ck8:A (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77980 3ck8:A (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77981 3ck8:A (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77982 3ck8:B (2.1) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77983 3ck8:B (2.1) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77984 3ck8:B (2.1) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77985 3ck9:A (2.2) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77986 3ck9:A (2.2) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77987 3ck9:A (2.2) BS03 GLC ? GO:0005509 ... Q8A1G2 18611383
    77988 3ck9:A (2.2) BS04 CA ? GO:0005509 ... Q8A1G2 18611383
    77989 3ck9:B (2.2) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77990 3ck9:B (2.2) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77991 3ck9:B (2.2) BS03 GLC ? GO:0005509 ... Q8A1G2 18611383
    77992 3ck9:B (2.2) BS04 CA ? GO:0005509 ... Q8A1G2 18611383
    77993 3ckb:A (2.3) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77994 3ckb:A (2.3) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77995 3ckb:A (2.3) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77996 3ckb:B (2.3) BS01 GLC ? GO:0005509 ... Q8A1G2 18611383
    77997 3ckb:B (2.3) BS02 GLC ? GO:0005509 ... Q8A1G2 18611383
    77998 3ckb:B (2.3) BS03 CA ? GO:0005509 ... Q8A1G2 18611383
    77999 3ckc:A (1.5) BS01 CA ? GO:0005509 ... Q8A1G2 18611383
    78000 3ckc:B (1.5) BS01 CA ? GO:0005509 ... Q8A1G2 18611383

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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