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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    77201 3cc9:A (2.3) BS02 GRG ? GO:0004161 ... A5K4U6 N/A
    77202 3cc9:B (2.3) BS01 GRG ? GO:0004161 ... A5K4U6 N/A
    77203 3cc9:B (2.3) BS02 GRG ? GO:0004161 ... A5K4U6 N/A
    77204 3cc9:C (2.3) BS01 GRG ? GO:0004161 ... A5K4U6 N/A
    77205 3cc9:C (2.3) BS02 GRG ? GO:0004161 ... A5K4U6 N/A
    77206 3cc9:D (2.3) BS01 GRG ? GO:0004161 ... A5K4U6 N/A
    77207 3cc9:D (2.3) BS02 GRG ? GO:0004161 ... A5K4U6 N/A
    77208 3ccb:A (2.49) BS01 B2Y 3.4.14.5 GO:0001618 ... P27487 18346892 MOAD: ic50=30uM
    PDBbind: -logKd/Ki=4.52, IC50=30uM
    BindingDB: IC50=30000nM
    77209 3ccb:B (2.49) BS01 B2Y 3.4.14.5 GO:0001618 ... P27487 18346892 MOAD: ic50=30uM
    BindingDB: IC50=30000nM
    77210 3ccb:C (2.49) BS01 B2Y 3.4.14.5 GO:0001618 ... P27487 18346892 MOAD: ic50=30uM
    BindingDB: IC50=30000nM
    77211 3ccb:D (2.49) BS01 B2Y 3.4.14.5 GO:0001618 ... P27487 18346892 MOAD: ic50=30uM
    BindingDB: IC50=30000nM
    77212 3ccc:A (2.71) BS01 7AC 3.4.14.5 GO:0001618 ... P27487 18346892 PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    77213 3ccc:B (2.71) BS01 7AC 3.4.14.5 GO:0001618 ... P27487 18346892 BindingDB: IC50=8nM
    77214 3ccc:C (2.71) BS01 7AC 3.4.14.5 GO:0001618 ... P27487 18346892 BindingDB: IC50=8nM
    77215 3ccc:D (2.71) BS01 7AC 3.4.14.5 GO:0001618 ... P27487 18346892 BindingDB: IC50=8nM
    77216 3cce:1 (2.75) BS01 rna ? GO:0003723 ... P32410 18455733
    77217 3cce:2 (2.75) BS01 rna ? GO:0003735 ... P22452 18455733
    77218 3cce:3 (2.75) BS01 rna ? GO:0000049 ... P32411 18455733
    77219 3cce:A (2.75) BS01 rna ? GO:0002181 ... P20276 18455733
    77220 3cce:A (2.75) BS02 MG ? GO:0002181 ... P20276 18455733
    77221 3cce:A (2.75) BS03 MG ? GO:0002181 ... P20276 18455733
    77222 3cce:B (2.75) BS01 rna ? GO:0003723 ... P20279 18455733
    77223 3cce:C (2.75) BS01 rna ? GO:0003723 ... P12735 18455733
    77224 3cce:D (2.75) BS01 rna ? GO:0000049 ... P14124 18455733
    77225 3cce:D (2.75) BS02 rna ? GO:0000049 ... P14124 18455733
    77226 3cce:E (2.75) BS01 rna ? GO:0002181 ... P14135 18455733
    77227 3cce:F (2.75) BS01 rna ? GO:0001682 ... P12743 18455733
    77228 3cce:H (2.75) BS01 rna ? GO:0000027 ... P60617 18455733
    77229 3cce:I (2.75) BS01 rna ? GO:0003735 ... P14122 18455733
    77230 3cce:J (2.75) BS01 rna ? GO:0003729 ... P29198 18455733
    77231 3cce:K (2.75) BS01 rna ? GO:0003735 ... P22450 18455733
    77232 3cce:L (2.75) BS01 rna ? GO:0003735 ... P12737 18455733
    77233 3cce:M (2.75) BS01 rna ? GO:0002181 ... P60618 18455733
    77234 3cce:N (2.75) BS01 rna ? GO:0000027 ... P14123 18455733
    77235 3cce:N (2.75) BS02 rna ? GO:0000027 ... P14123 18455733
    77236 3cce:O (2.75) BS01 rna ? GO:0003723 ... P12733 18455733
    77237 3cce:P (2.75) BS01 rna ? GO:0003723 ... P14119 18455733
    77238 3cce:Q (2.75) BS01 rna ? GO:0003735 ... P12734 18455733
    77239 3cce:Q (2.75) BS02 rna ? GO:0003735 ... P12734 18455733
    77240 3cce:R (2.75) BS01 rna ? GO:0002181 ... P10970 18455733
    77241 3cce:S (2.75) BS01 rna ? GO:0000027 ... P12732 18455733
    77242 3cce:T (2.75) BS01 rna ? GO:0002181 ... P10972 18455733
    77243 3cce:T (2.75) BS02 MG ? GO:0002181 ... P10972 18455733
    77244 3cce:U (2.75) BS01 rna ? GO:0003735 ... P14116 18455733
    77245 3cce:V (2.75) BS01 rna ? GO:0003735 ... P10971 18455733
    77246 3cce:W (2.75) BS01 rna ? GO:0000463 ... P14121 18455733
    77247 3cce:W (2.75) BS02 rna ? GO:0000463 ... P14121 18455733
    77248 3cce:X (2.75) BS01 rna ? GO:0002181 ... P18138 18455733
    77249 3cce:Y (2.75) BS01 rna ? GO:0000166 ... P12736 18455733
    77250 3cce:Y (2.75) BS02 MG ? GO:0000166 ... P12736 18455733
    77251 3cce:Z (2.75) BS01 rna ? GO:0003735 ... P60619 18455733
    77252 3ccj:1 (3.3) BS01 rna ? GO:0003723 ... P32410 18455733
    77253 3ccj:2 (3.3) BS01 rna ? GO:0003735 ... P22452 18455733
    77254 3ccj:3 (3.3) BS01 rna ? GO:0000049 ... P32411 18455733
    77255 3ccj:A (3.3) BS01 rna ? GO:0002181 ... P20276 18455733
    77256 3ccj:A (3.3) BS02 MG ? GO:0002181 ... P20276 18455733
    77257 3ccj:A (3.3) BS03 MG ? GO:0002181 ... P20276 18455733
    77258 3ccj:B (3.3) BS01 rna ? GO:0003723 ... P20279 18455733
    77259 3ccj:C (3.3) BS01 rna ? GO:0003723 ... P12735 18455733
    77260 3ccj:D (3.3) BS01 rna ? GO:0000049 ... P14124 18455733
    77261 3ccj:D (3.3) BS02 rna ? GO:0000049 ... P14124 18455733
    77262 3ccj:E (3.3) BS01 rna ? GO:0002181 ... P14135 18455733
    77263 3ccj:F (3.3) BS01 rna ? GO:0001682 ... P12743 18455733
    77264 3ccj:H (3.3) BS01 rna ? GO:0000027 ... P60617 18455733
    77265 3ccj:I (3.3) BS01 rna ? GO:0003735 ... P14122 18455733
    77266 3ccj:J (3.3) BS01 rna ? GO:0003729 ... P29198 18455733
    77267 3ccj:K (3.3) BS01 rna ? GO:0003735 ... P22450 18455733
    77268 3ccj:L (3.3) BS01 rna ? GO:0003735 ... P12737 18455733
    77269 3ccj:M (3.3) BS01 rna ? GO:0002181 ... P60618 18455733
    77270 3ccj:N (3.3) BS01 rna ? GO:0000027 ... P14123 18455733
    77271 3ccj:N (3.3) BS02 rna ? GO:0000027 ... P14123 18455733
    77272 3ccj:O (3.3) BS01 rna ? GO:0003723 ... P12733 18455733
    77273 3ccj:P (3.3) BS01 rna ? GO:0003723 ... P14119 18455733
    77274 3ccj:Q (3.3) BS01 rna ? GO:0003735 ... P12734 18455733
    77275 3ccj:Q (3.3) BS02 rna ? GO:0003735 ... P12734 18455733
    77276 3ccj:R (3.3) BS01 rna ? GO:0002181 ... P10970 18455733
    77277 3ccj:S (3.3) BS01 rna ? GO:0000027 ... P12732 18455733
    77278 3ccj:T (3.3) BS01 rna ? GO:0002181 ... P10972 18455733
    77279 3ccj:T (3.3) BS02 MG ? GO:0002181 ... P10972 18455733
    77280 3ccj:U (3.3) BS01 rna ? GO:0003735 ... P14116 18455733
    77281 3ccj:V (3.3) BS01 rna ? GO:0003735 ... P10971 18455733
    77282 3ccj:W (3.3) BS01 rna ? GO:0000463 ... P14121 18455733
    77283 3ccj:W (3.3) BS02 rna ? GO:0000463 ... P14121 18455733
    77284 3ccj:X (3.3) BS01 rna ? GO:0002181 ... P18138 18455733
    77285 3ccj:Y (3.3) BS01 rna ? GO:0000166 ... P12736 18455733
    77286 3ccj:Z (3.3) BS01 rna ? GO:0003735 ... P60619 18455733
    77287 3ccl:1 (2.9) BS01 rna ? GO:0003723 ... P32410 18455733
    77288 3ccl:2 (2.9) BS01 rna ? GO:0003735 ... P22452 18455733
    77289 3ccl:3 (2.9) BS01 rna ? GO:0000049 ... P32411 18455733
    77290 3ccl:A (2.9) BS01 rna ? GO:0002181 ... P20276 18455733
    77291 3ccl:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    77292 3ccl:B (2.9) BS01 rna ? GO:0003723 ... P20279 18455733
    77293 3ccl:C (2.9) BS01 rna ? GO:0003723 ... P12735 18455733
    77294 3ccl:D (2.9) BS01 rna ? GO:0000049 ... P14124 18455733
    77295 3ccl:D (2.9) BS02 rna ? GO:0000049 ... P14124 18455733
    77296 3ccl:E (2.9) BS01 rna ? GO:0002181 ... P14135 18455733
    77297 3ccl:F (2.9) BS01 rna ? GO:0001682 ... P12743 18455733
    77298 3ccl:H (2.9) BS01 rna ? GO:0000027 ... P60617 18455733
    77299 3ccl:I (2.9) BS01 rna ? GO:0003735 ... P14122 18455733
    77300 3ccl:J (2.9) BS01 rna ? GO:0003729 ... P29198 18455733
    77301 3ccl:K (2.9) BS01 rna ? GO:0003735 ... P22450 18455733
    77302 3ccl:L (2.9) BS01 rna ? GO:0003735 ... P12737 18455733
    77303 3ccl:M (2.9) BS01 rna ? GO:0002181 ... P60618 18455733
    77304 3ccl:N (2.9) BS01 rna ? GO:0000027 ... P14123 18455733
    77305 3ccl:N (2.9) BS02 rna ? GO:0000027 ... P14123 18455733
    77306 3ccl:O (2.9) BS01 rna ? GO:0003723 ... P12733 18455733
    77307 3ccl:P (2.9) BS01 rna ? GO:0003723 ... P14119 18455733
    77308 3ccl:Q (2.9) BS01 rna ? GO:0003735 ... P12734 18455733
    77309 3ccl:Q (2.9) BS02 rna ? GO:0003735 ... P12734 18455733
    77310 3ccl:R (2.9) BS01 rna ? GO:0002181 ... P10970 18455733
    77311 3ccl:S (2.9) BS01 rna ? GO:0000027 ... P12732 18455733
    77312 3ccl:T (2.9) BS01 rna ? GO:0002181 ... P10972 18455733
    77313 3ccl:T (2.9) BS02 MG ? GO:0002181 ... P10972 18455733
    77314 3ccl:U (2.9) BS01 rna ? GO:0003735 ... P14116 18455733
    77315 3ccl:V (2.9) BS01 rna ? GO:0003735 ... P10971 18455733
    77316 3ccl:W (2.9) BS01 rna ? GO:0000463 ... P14121 18455733
    77317 3ccl:W (2.9) BS02 rna ? GO:0000463 ... P14121 18455733
    77318 3ccl:X (2.9) BS01 rna ? GO:0002181 ... P18138 18455733
    77319 3ccl:Y (2.9) BS01 rna ? GO:0000166 ... P12736 18455733
    77320 3ccl:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    77321 3ccl:Z (2.9) BS01 rna ? GO:0003735 ... P60619 18455733
    77322 3ccm:1 (2.55) BS01 rna ? GO:0003723 ... P32410 18455733 PDBbind: Kd=100uM
    77323 3ccm:2 (2.55) BS01 rna ? GO:0003735 ... P22452 18455733 PDBbind: Kd=100uM
    77324 3ccm:3 (2.55) BS01 rna ? GO:0000049 ... P32411 18455733 PDBbind: Kd=100uM
    77325 3ccm:A (2.55) BS01 rna ? GO:0002181 ... P20276 18455733 PDBbind: Kd=100uM
    77326 3ccm:A (2.55) BS02 MG ? GO:0002181 ... P20276 18455733
    77327 3ccm:B (2.55) BS01 rna ? GO:0003723 ... P20279 18455733 PDBbind: Kd=100uM
    77328 3ccm:C (2.55) BS01 rna ? GO:0003723 ... P12735 18455733 PDBbind: Kd=100uM
    77329 3ccm:D (2.55) BS01 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=100uM
    77330 3ccm:D (2.55) BS02 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=100uM
    77331 3ccm:E (2.55) BS01 rna ? GO:0002181 ... P14135 18455733 PDBbind: Kd=100uM
    77332 3ccm:F (2.55) BS01 rna ? GO:0001682 ... P12743 18455733 PDBbind: Kd=100uM
    77333 3ccm:H (2.55) BS01 rna ? GO:0000027 ... P60617 18455733 PDBbind: Kd=100uM
    77334 3ccm:I (2.55) BS01 rna ? GO:0003735 ... P14122 18455733 PDBbind: Kd=100uM
    77335 3ccm:J (2.55) BS01 rna ? GO:0003729 ... P29198 18455733 PDBbind: Kd=100uM
    77336 3ccm:K (2.55) BS01 rna ? GO:0003735 ... P22450 18455733 PDBbind: Kd=100uM
    77337 3ccm:L (2.55) BS01 rna ? GO:0003735 ... P12737 18455733 PDBbind: Kd=100uM
    77338 3ccm:M (2.55) BS01 rna ? GO:0002181 ... P60618 18455733 PDBbind: Kd=100uM
    77339 3ccm:N (2.55) BS01 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=100uM
    77340 3ccm:N (2.55) BS02 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=100uM
    77341 3ccm:O (2.55) BS01 rna ? GO:0003723 ... P12733 18455733 PDBbind: Kd=100uM
    77342 3ccm:P (2.55) BS01 rna ? GO:0003723 ... P14119 18455733 PDBbind: Kd=100uM
    77343 3ccm:Q (2.55) BS01 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=100uM
    77344 3ccm:Q (2.55) BS02 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=100uM
    77345 3ccm:R (2.55) BS01 rna ? GO:0002181 ... P10970 18455733 PDBbind: Kd=100uM
    77346 3ccm:S (2.55) BS01 rna ? GO:0000027 ... P12732 18455733 PDBbind: Kd=100uM
    77347 3ccm:T (2.55) BS01 rna ? GO:0002181 ... P10972 18455733 PDBbind: Kd=100uM
    77348 3ccm:T (2.55) BS02 MG ? GO:0002181 ... P10972 18455733
    77349 3ccm:U (2.55) BS01 rna ? GO:0003735 ... P14116 18455733 PDBbind: Kd=100uM
    77350 3ccm:V (2.55) BS01 rna ? GO:0003735 ... P10971 18455733 PDBbind: Kd=100uM
    77351 3ccm:W (2.55) BS01 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=100uM
    77352 3ccm:W (2.55) BS02 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=100uM
    77353 3ccm:X (2.55) BS01 rna ? GO:0002181 ... P18138 18455733 PDBbind: Kd=100uM
    77354 3ccm:Y (2.55) BS01 rna ? GO:0000166 ... P12736 18455733 PDBbind: Kd=100uM
    77355 3ccm:Y (2.55) BS02 MG ? GO:0000166 ... P12736 18455733
    77356 3ccm:Z (2.55) BS01 rna ? GO:0003735 ... P60619 18455733 PDBbind: Kd=100uM
    77357 3ccq:1 (2.9) BS01 rna ? GO:0003723 ... P32410 18455733 PDBbind: Kd=1mM
    77358 3ccq:2 (2.9) BS01 rna ? GO:0003735 ... P22452 18455733 PDBbind: Kd=1mM
    77359 3ccq:3 (2.9) BS01 rna ? GO:0000049 ... P32411 18455733 PDBbind: Kd=1mM
    77360 3ccq:A (2.9) BS01 rna ? GO:0002181 ... P20276 18455733 PDBbind: Kd=1mM
    77361 3ccq:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    77362 3ccq:B (2.9) BS01 rna ? GO:0003723 ... P20279 18455733 PDBbind: Kd=1mM
    77363 3ccq:C (2.9) BS01 rna ? GO:0003723 ... P12735 18455733 PDBbind: Kd=1mM
    77364 3ccq:D (2.9) BS01 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=1mM
    77365 3ccq:D (2.9) BS02 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=1mM
    77366 3ccq:E (2.9) BS01 rna ? GO:0002181 ... P14135 18455733 PDBbind: Kd=1mM
    77367 3ccq:F (2.9) BS01 rna ? GO:0001682 ... P12743 18455733 PDBbind: Kd=1mM
    77368 3ccq:H (2.9) BS01 rna ? GO:0000027 ... P60617 18455733 PDBbind: Kd=1mM
    77369 3ccq:I (2.9) BS01 rna ? GO:0003735 ... P14122 18455733 PDBbind: Kd=1mM
    77370 3ccq:J (2.9) BS01 rna ? GO:0003729 ... P29198 18455733 PDBbind: Kd=1mM
    77371 3ccq:K (2.9) BS01 rna ? GO:0003735 ... P22450 18455733 PDBbind: Kd=1mM
    77372 3ccq:L (2.9) BS01 rna ? GO:0003735 ... P12737 18455733 PDBbind: Kd=1mM
    77373 3ccq:M (2.9) BS01 rna ? GO:0002181 ... P60618 18455733 PDBbind: Kd=1mM
    77374 3ccq:N (2.9) BS01 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=1mM
    77375 3ccq:N (2.9) BS02 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=1mM
    77376 3ccq:O (2.9) BS01 rna ? GO:0003723 ... P12733 18455733 PDBbind: Kd=1mM
    77377 3ccq:P (2.9) BS01 rna ? GO:0003723 ... P14119 18455733 PDBbind: Kd=1mM
    77378 3ccq:Q (2.9) BS01 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=1mM
    77379 3ccq:Q (2.9) BS02 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=1mM
    77380 3ccq:R (2.9) BS01 rna ? GO:0002181 ... P10970 18455733 PDBbind: Kd=1mM
    77381 3ccq:S (2.9) BS01 rna ? GO:0000027 ... P12732 18455733 PDBbind: Kd=1mM
    77382 3ccq:T (2.9) BS01 rna ? GO:0002181 ... P10972 18455733 PDBbind: Kd=1mM
    77383 3ccq:T (2.9) BS02 MG ? GO:0002181 ... P10972 18455733
    77384 3ccq:U (2.9) BS01 rna ? GO:0003735 ... P14116 18455733 PDBbind: Kd=1mM
    77385 3ccq:V (2.9) BS01 rna ? GO:0003735 ... P10971 18455733 PDBbind: Kd=1mM
    77386 3ccq:W (2.9) BS01 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=1mM
    77387 3ccq:W (2.9) BS02 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=1mM
    77388 3ccq:X (2.9) BS01 rna ? GO:0002181 ... P18138 18455733 PDBbind: Kd=1mM
    77389 3ccq:Y (2.9) BS01 rna ? GO:0000166 ... P12736 18455733 PDBbind: Kd=1mM
    77390 3ccq:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    77391 3ccq:Z (2.9) BS01 rna ? GO:0003735 ... P60619 18455733 PDBbind: Kd=1mM
    77392 3ccr:1 (3.0) BS01 rna ? GO:0003723 ... P32410 18455733 PDBbind: Kd=100uM
    77393 3ccr:2 (3.0) BS01 rna ? GO:0003735 ... P22452 18455733 PDBbind: Kd=100uM
    77394 3ccr:3 (3.0) BS01 rna ? GO:0000049 ... P32411 18455733 PDBbind: Kd=100uM
    77395 3ccr:A (3.0) BS01 rna ? GO:0002181 ... P20276 18455733 PDBbind: Kd=100uM
    77396 3ccr:A (3.0) BS02 MG ? GO:0002181 ... P20276 18455733
    77397 3ccr:B (3.0) BS01 rna ? GO:0003723 ... P20279 18455733 PDBbind: Kd=100uM
    77398 3ccr:B (3.0) BS02 MG ? GO:0003723 ... P20279 18455733
    77399 3ccr:C (3.0) BS01 rna ? GO:0003723 ... P12735 18455733 PDBbind: Kd=100uM
    77400 3ccr:D (3.0) BS01 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=100uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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