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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    76601 3bwe:D (2.4) BS01 PO4 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 18922803
    76602 3bwe:E (2.4) BS01 PO4 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 18922803
    76603 3bwe:F (2.4) BS01 PO4 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 18922803
    76604 3bwf:A (2.35) BS01 DWC 2.7.11.1 GO:0004672 ... P11309 18425743 MOAD: ic50=200pM
    PDBbind: -logKd/Ki=9.70, IC50=200pM
    76605 3bwj:A (2.3) BS01 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    76606 3bwj:A (2.3) BS02 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    76607 3bwn:A (2.25) BS01 PMP 2.6.1.27
    2.6.1.99    		 GO:0004021 ... Q9S7N2 18394996
    76608 3bwn:B (2.25) BS01 PMP 2.6.1.27
    2.6.1.99    		 GO:0004021 ... Q9S7N2 18394996
    76609 3bwn:D (2.25) BS01 PMP 2.6.1.27
    2.6.1.99    		 GO:0004021 ... Q9S7N2 18394996
    76610 3bwn:F (2.25) BS01 PMP 2.6.1.27
    2.6.1.99    		 GO:0004021 ... Q9S7N2 18394996
    76611 3bwn:F (2.25) BS02 PHE 2.6.1.27
    2.6.1.99    		 GO:0004021 ... Q9S7N2 18394996
    76612 3bwr:A (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    76613 3bwr:A (2.25) BS02 SIA ? GO:0005198 ... P03087 18353982
    76614 3bwr:C (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    76615 3bwr:C (2.25) BS02 SIA ? GO:0005198 ... P03087 18353982
    76616 3bwr:E (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    76617 3bwr:E (2.25) BS02 SIA ? GO:0005198 ... P03087 18353982
    76618 3bx1:A (1.85) BS01 CA 3.4.21.62 GO:0004252 ... P29600 18556023
    76619 3bx1:B (1.85) BS01 CA 3.4.21.62 GO:0004252 ... P29600 18556023
    76620 3bx5:A (2.4) BS01 304 2.7.11.24 GO:0000077 ... Q16539 18313298 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    BindingDB: IC50=3.5nM
    76621 3bxd:A (2.0) BS01 FE 1.13.99.1 GO:0004033 ... Q9QXN5 18364358
    76622 3bxd:A (2.0) BS02 FE 1.13.99.1 GO:0004033 ... Q9QXN5 18364358
    76623 3bxd:A (2.0) BS03 INS 1.13.99.1 GO:0004033 ... Q9QXN5 18364358 MOAD: Ki=62uM
    76624 3bxk:A (2.55) BS01 peptide ? GO:0000086 ... P0DP29 N/A
    76625 3bxk:A (2.55) BS02 CA ? GO:0000086 ... P0DP29 N/A
    76626 3bxk:A (2.55) BS03 CA ? GO:0000086 ... P0DP29 N/A
    76627 3bxk:A (2.55) BS04 CA ? GO:0000086 ... P0DP29 N/A
    76628 3bxk:A (2.55) BS05 CA ? GO:0000086 ... P0DP29 N/A
    76629 3bxk:C (2.55) BS01 peptide ? GO:0000086 ... P0DP29 N/A
    76630 3bxk:C (2.55) BS02 CA ? GO:0000086 ... P0DP29 N/A
    76631 3bxk:C (2.55) BS03 CA ? GO:0000086 ... P0DP29 N/A
    76632 3bxk:C (2.55) BS04 CA ? GO:0000086 ... P0DP29 N/A
    76633 3bxk:C (2.55) BS05 CA ? GO:0000086 ... P0DP29 N/A
    76634 3bxl:A (2.3) BS01 peptide ? GO:0000086 ... P0DP29 N/A
    76635 3bxl:A (2.3) BS02 CA ? GO:0000086 ... P0DP29 N/A
    76636 3bxl:A (2.3) BS03 CA ? GO:0000086 ... P0DP29 N/A
    76637 3bxl:A (2.3) BS04 CA ? GO:0000086 ... P0DP29 N/A
    76638 3bxl:A (2.3) BS05 CA ? GO:0000086 ... P0DP29 N/A
    76639 3bxm:A (1.71) BS01 peptide 3.4.17.21 GO:0004180 ... Q04609 19301871
    76640 3bxm:A (1.71) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 19301871
    76641 3bxm:A (1.71) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 19301871
    76642 3bxm:A (1.71) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 19301871
    76643 3bxq:B (1.3) BS01 peptide ? GO:0005179 ... P01308 18492668
    76644 3bxq:D (1.3) BS01 peptide ? GO:0005179 ... P01308 18492668
    76645 3bxz:A (3.0) BS01 ADP 7.4.2.8 GO:0005524 ... P10408 18761349 PDBbind: -logKd/Ki=6.72, Kd=0.19uM
    76646 3bxz:B (3.0) BS01 ADP 7.4.2.8 GO:0005524 ... P10408 18761349
    76647 3bya:A (1.85) BS01 peptide ? GO:0000086 ... P0DP23 N/A
    76648 3bya:A (1.85) BS02 CA ? GO:0000086 ... P0DP23 N/A
    76649 3bya:A (1.85) BS03 CA ? GO:0000086 ... P0DP23 N/A
    76650 3bya:A (1.85) BS04 CA ? GO:0000086 ... P0DP23 N/A
    76651 3bya:A (1.85) BS05 CA ? GO:0000086 ... P0DP23 N/A
    76652 3byx:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 21696158
    76653 3byx:A (2.4) BS02 C00 2.1.1.45 GO:0004799 ... P00469 21696158 BindingDB: Ki=3000nM
    76654 3byz:A (2.69) BS01 NDP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108
    76655 3byz:A (2.69) BS02 H11 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108 BindingDB: Ki=28nM
    76656 3byz:B (2.69) BS01 NDP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108
    76657 3byz:B (2.69) BS02 H11 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108 BindingDB: Ki=28nM
    76658 3byz:C (2.69) BS01 NDP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108
    76659 3byz:C (2.69) BS02 H11 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108 BindingDB: Ki=28nM
    76660 3byz:D (2.69) BS01 NDP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108
    76661 3byz:D (2.69) BS02 H11 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18419108 BindingDB: Ki=28nM
    76662 3bz0:A (2.7) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 21696158
    76663 3bz0:A (2.7) BS02 C00 2.1.1.45 GO:0004799 ... P00469 21696158 BindingDB: Ki=3000nM
    76664 3bz7:A (2.0) BS01 MG ? GO:0003774 ... P08799 18528569
    76665 3bz7:A (2.0) BS02 BL4 ? GO:0003774 ... P08799 18528569
    76666 3bz7:A (2.0) BS03 ADP ? GO:0003774 ... P08799 18528569
    76667 3bz8:A (2.2) BS01 MG ? GO:0003774 ... P08799 18528569
    76668 3bz8:A (2.2) BS02 ADP ? GO:0003774 ... P08799 18528569
    76669 3bz8:A (2.2) BS03 BL6 ? GO:0003774 ... P08799 18528569
    76670 3bz9:A (2.1) BS01 MG ? GO:0003774 ... P08799 18528569
    76671 3bz9:A (2.1) BS02 ADP ? GO:0003774 ... P08799 18528569
    76672 3bz9:A (2.1) BS03 BL7 ? GO:0003774 ... P08799 18528569
    76673 3bzl:C (1.71) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76674 3bzo:B (1.5) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76675 3bzu:A (2.25) BS01 NAP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989
    76676 3bzu:A (2.25) BS02 A21 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989 MOAD: ic50=14nM
    BindingDB: Ki=22nM
    76677 3bzu:B (2.25) BS01 NAP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989
    76678 3bzu:B (2.25) BS02 A21 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989 MOAD: ic50=14nM
    BindingDB: Ki=22nM
    76679 3bzu:C (2.25) BS01 NAP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989
    76680 3bzu:C (2.25) BS02 A21 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989 MOAD: ic50=14nM
    BindingDB: Ki=22nM
    76681 3bzu:D (2.25) BS01 NAP 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989
    76682 3bzu:D (2.25) BS02 A21 1.1.1.146
    1.1.1.201    		 GO:0005496 ... P28845 18069989 MOAD: ic50=14nM
    BindingDB: Ki=22nM
    76683 3bzv:B (1.94) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76684 3bzx:B (1.6) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76685 3bzy:B (1.2) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76686 3bzz:B (1.407) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76687 3c00:B (1.41) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76688 3c01:E (2.6) BS01 peptide ? GO:0009306 ... P40702 18451864
    76689 3c01:E (2.6) BS02 peptide ? GO:0009306 ... P40702 18451864
    76690 3c01:E (2.6) BS03 CYS ? GO:0009306 ... P40702 18451864
    76691 3c01:F (2.6) BS01 peptide ? GO:0009306 ... P40702 18451864
    76692 3c01:F (2.6) BS02 CYS ? GO:0009306 ... P40702 18451864
    76693 3c01:F (2.6) BS03 CYS ? GO:0009306 ... P40702 18451864
    76694 3c01:G (2.6) BS01 peptide ? GO:0009306 ... P40702 18451864
    76695 3c01:G (2.6) BS02 peptide ? GO:0009306 ... P40702 18451864
    76696 3c01:G (2.6) BS03 CYS ? GO:0009306 ... P40702 18451864
    76697 3c01:H (2.6) BS01 peptide ? GO:0009306 ... P40702 18451864
    76698 3c01:H (2.6) BS02 CYS ? GO:0009306 ... P40702 18451864
    76699 3c02:A (2.05) BS01 GOL ? GO:0005886 ... Q8II36 18500352
    76700 3c03:A (1.9) BS01 PRO ? GO:0009306 ... Q9AJ26 18451864
    76701 3c03:C (1.9) BS01 peptide ? GO:0009306 ... Q9AJ26 18451864
    76702 3c06:A (2.6) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 21696158
    76703 3c06:A (2.6) BS02 14C 2.1.1.45 GO:0004799 ... P00469 21696158 BindingDB: Ki=23000nM
    76704 3c0a:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 21696158
    76705 3c0a:A (2.4) BS02 14C 2.1.1.45 GO:0004799 ... P00469 21696158 BindingDB: Ki=23000nM
    76706 3c0o:A (2.5) BS01 M6P ? GO:0005576 ... P09167 23912165
    76707 3c0o:B (2.5) BS01 M6P ? GO:0005576 ... P09167 23912165
    76708 3c0p:A (1.95) BS01 FAD 1.5.99.12 GO:0003824 ... Q9T0N8 18571199
    76709 3c0p:A (1.95) BS02 HA8 1.5.99.12 GO:0003824 ... Q9T0N8 18571199
    76710 3c0t:A (2.4) BS01 peptide ? GO:0003712 ... O14198 18381891
    76711 3c0v:A (1.8) BS01 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76712 3c0v:A (1.8) BS02 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76713 3c0v:A (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    76714 3c0v:B (1.8) BS01 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76715 3c0v:B (1.8) BS02 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76716 3c0v:B (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    76717 3c0v:C (1.8) BS01 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    76718 3c0v:C (1.8) BS02 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    76719 3c0v:D (1.8) BS01 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76720 3c0v:D (1.8) BS02 ZEA ? GO:0004864 ... A0A1S3THR8 18453695
    76721 3c0v:D (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    76722 3c0w:A (2.2) BS01 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76723 3c0w:A (2.2) BS02 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76724 3c0w:A (2.2) BS03 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76725 3c0w:A (2.2) BS04 CA 3.1.-.- GO:0004519 ... P03882 18424798
    76726 3c0w:A (2.2) BS05 CA 3.1.-.- GO:0004519 ... P03882 18424798
    76727 3c0x:A (2.3) BS01 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76728 3c0x:A (2.3) BS02 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76729 3c0x:A (2.3) BS03 dna 3.1.-.- GO:0004519 ... P03882 18424798
    76730 3c0x:A (2.3) BS04 CA 3.1.-.- GO:0004519 ... P03882 18424798
    76731 3c0x:A (2.3) BS05 CA 3.1.-.- GO:0004519 ... P03882 18424798
    76732 3c14:C (2.68) BS01 MG ? GO:0003924 ... P04896 19243146
    76733 3c14:C (2.68) BS02 GSP ? GO:0003924 ... P04896 19243146
    76734 3c15:C (2.78) BS01 GSP ? GO:0003924 ... P04896 19243146
    76735 3c16:C (2.87) BS01 MG ? GO:0003924 ... P04896 19243146
    76736 3c16:C (2.87) BS02 GSP ? GO:0003924 ... P04896 19243146
    76737 3c1b:A (2.2) BS01 dna ? GO:0000786 ... P84233 18794842
    76738 3c1b:A (2.2) BS02 dna ? GO:0000786 ... P84233 18794842
    76739 3c1b:B (2.2) BS01 dna ? GO:0000786 ... P62799 18794842
    76740 3c1b:B (2.2) BS02 dna ? GO:0000786 ... P62799 18794842
    76741 3c1b:C (2.2) BS01 dna ? GO:0000786 ... P06897 18794842
    76742 3c1b:C (2.2) BS02 dna ? GO:0000786 ... P06897 18794842
    76743 3c1b:D (2.2) BS01 dna ? GO:0000786 ... Q28D68 18794842
    76744 3c1b:D (2.2) BS02 dna ? GO:0000786 ... Q28D68 18794842
    76745 3c1b:E (2.2) BS01 dna ? GO:0000786 ... P84233 18794842
    76746 3c1b:E (2.2) BS02 dna ? GO:0000786 ... P84233 18794842
    76747 3c1b:F (2.2) BS01 dna ? GO:0000786 ... P62799 18794842
    76748 3c1b:F (2.2) BS02 dna ? GO:0000786 ... P62799 18794842
    76749 3c1b:G (2.2) BS01 dna ? GO:0000786 ... P06897 18794842
    76750 3c1b:G (2.2) BS02 dna ? GO:0000786 ... P06897 18794842
    76751 3c1b:H (2.2) BS01 dna ? GO:0000786 ... Q28D68 18794842
    76752 3c1b:H (2.2) BS02 dna ? GO:0000786 ... Q28D68 18794842
    76753 3c1c:A (3.15) BS01 dna ? GO:0000786 ... P84233 18794842
    76754 3c1c:A (3.15) BS02 dna ? GO:0000786 ... P84233 18794842
    76755 3c1c:B (3.15) BS01 dna ? GO:0000786 ... P62799 18794842
    76756 3c1c:B (3.15) BS02 dna ? GO:0000786 ... P62799 18794842
    76757 3c1c:C (3.15) BS01 dna ? GO:0000786 ... P06897 18794842
    76758 3c1c:C (3.15) BS02 dna ? GO:0000786 ... P06897 18794842
    76759 3c1c:D (3.15) BS01 dna ? GO:0000786 ... Q28D68 18794842
    76760 3c1c:E (3.15) BS01 dna ? GO:0000786 ... P84233 18794842
    76761 3c1c:E (3.15) BS02 dna ? GO:0000786 ... P84233 18794842
    76762 3c1c:F (3.15) BS01 dna ? GO:0000786 ... P62799 18794842
    76763 3c1c:F (3.15) BS02 dna ? GO:0000786 ... P62799 18794842
    76764 3c1c:G (3.15) BS01 dna ? GO:0000786 ... P06897 18794842
    76765 3c1c:G (3.15) BS02 dna ? GO:0000786 ... P06897 18794842
    76766 3c1c:H (3.15) BS01 dna ? GO:0000786 ... Q28D68 18794842
    76767 3c1c:H (3.15) BS02 dna ? GO:0000786 ... Q28D68 18794842
    76768 3c1k:A (1.84) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 18291642
    76769 3c1k:A (1.84) BS02 T15 3.4.21.5 GO:0004252 ... P00734 18291642 MOAD: Ki=0.36nM
    PDBbind: -logKd/Ki=9.44, Ki=0.36nM
    76770 3c1m:A (2.3) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76771 3c1m:A (2.3) BS02 ANP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76772 3c1m:B (2.3) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76773 3c1m:B (2.3) BS02 ANP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76774 3c1m:C (2.3) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76775 3c1m:C (2.3) BS02 ANP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76776 3c1m:D (2.3) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76777 3c1m:D (2.3) BS02 ANP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76778 3c1n:A (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76779 3c1n:A (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76780 3c1n:A (2.72) BS03 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76781 3c1n:B (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76782 3c1n:B (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76783 3c1n:B (2.72) BS03 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76784 3c1n:C (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76785 3c1n:C (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76786 3c1n:D (2.72) BS01 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76787 3c1n:D (2.72) BS02 THR 2.7.2.4 GO:0003824 ... Q57991 18334478
    76788 3c1s:A (2.5) BS01 GSH 1.11.1.9
    2.5.1.18    		 GO:0004364 ... P25373 18473363
    76789 3c1v:A (1.5) BS01 CA ? GO:0001837 ... P26447 18435928
    76790 3c1v:A (1.5) BS02 CA ? GO:0001837 ... P26447 18435928
    76791 3c1v:B (1.5) BS01 CA ? GO:0001837 ... P26447 18435928
    76792 3c1v:B (1.5) BS02 CA ? GO:0001837 ... P26447 18435928
    76793 3c1v:C (1.5) BS01 CA ? GO:0001837 ... P26447 18435928
    76794 3c1v:C (1.5) BS02 CA ? GO:0001837 ... P26447 18435928
    76795 3c1v:D (1.5) BS01 CA ? GO:0001837 ... P26447 18435928
    76796 3c1v:D (1.5) BS02 CA ? GO:0001837 ... P26447 18435928
    76797 3c20:A (2.7) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76798 3c20:B (2.7) BS01 ASP 2.7.2.4 GO:0003824 ... Q57991 18334478
    76799 3c2a:L (2.1) BS01 peptide ? GO:0002250 ... P0DOY2 18566514
    76800 3c2a:M (2.1) BS01 peptide ? GO:0002250 ... P0DOY2 18566514
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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