Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    75201 3azf:H (2.7) BS01 dna ? GO:0000786 ... P06899 21812398
    75202 3azf:H (2.7) BS02 dna ? GO:0000786 ... P06899 21812398
    75203 3azg:A (2.4) BS01 dna ? GO:0000786 ... P68431 21812398
    75204 3azg:A (2.4) BS02 dna ? GO:0000786 ... P68431 21812398
    75205 3azg:B (2.4) BS01 dna ? GO:0000781 ... P62805 21812398
    75206 3azg:B (2.4) BS02 dna ? GO:0000781 ... P62805 21812398
    75207 3azg:C (2.4) BS01 dna ? GO:0000786 ... P04908 21812398
    75208 3azg:C (2.4) BS02 dna ? GO:0000786 ... P04908 21812398
    75209 3azg:D (2.4) BS01 dna ? GO:0000786 ... P06899 21812398
    75210 3azg:D (2.4) BS02 dna ? GO:0000786 ... P06899 21812398
    75211 3azg:E (2.4) BS01 dna ? GO:0000786 ... P68431 21812398
    75212 3azg:E (2.4) BS02 dna ? GO:0000786 ... P68431 21812398
    75213 3azg:F (2.4) BS01 dna ? GO:0000781 ... P62805 21812398
    75214 3azg:F (2.4) BS02 dna ? GO:0000781 ... P62805 21812398
    75215 3azg:G (2.4) BS01 dna ? GO:0000786 ... P04908 21812398
    75216 3azg:G (2.4) BS02 dna ? GO:0000786 ... P04908 21812398
    75217 3azg:H (2.4) BS01 dna ? GO:0000786 ... P06899 21812398
    75218 3azg:H (2.4) BS02 dna ? GO:0000786 ... P06899 21812398
    75219 3azh:A (3.49) BS01 dna ? GO:0000786 ... P68431 21812398
    75220 3azh:A (3.49) BS02 dna ? GO:0000786 ... P68431 21812398
    75221 3azh:B (3.49) BS01 dna ? GO:0000781 ... P62805 21812398
    75222 3azh:B (3.49) BS02 dna ? GO:0000781 ... P62805 21812398
    75223 3azh:C (3.49) BS01 dna ? GO:0000786 ... P04908 21812398
    75224 3azh:C (3.49) BS02 dna ? GO:0000786 ... P04908 21812398
    75225 3azh:D (3.49) BS01 dna ? GO:0000786 ... P06899 21812398
    75226 3azh:D (3.49) BS02 dna ? GO:0000786 ... P06899 21812398
    75227 3azh:E (3.49) BS01 dna ? GO:0000786 ... P68431 21812398
    75228 3azh:E (3.49) BS02 dna ? GO:0000786 ... P68431 21812398
    75229 3azh:F (3.49) BS01 dna ? GO:0000781 ... P62805 21812398
    75230 3azh:F (3.49) BS02 dna ? GO:0000781 ... P62805 21812398
    75231 3azh:G (3.49) BS01 dna ? GO:0000786 ... P04908 21812398
    75232 3azh:G (3.49) BS02 dna ? GO:0000786 ... P04908 21812398
    75233 3azh:H (3.49) BS01 dna ? GO:0000786 ... P06899 21812398
    75234 3azh:H (3.49) BS02 dna ? GO:0000786 ... P06899 21812398
    75235 3azi:A (2.7) BS01 dna ? GO:0000786 ... P68431 21812398
    75236 3azi:A (2.7) BS02 dna ? GO:0000786 ... P68431 21812398
    75237 3azi:B (2.7) BS01 dna ? GO:0000781 ... P62805 21812398
    75238 3azi:B (2.7) BS02 dna ? GO:0000781 ... P62805 21812398
    75239 3azi:C (2.7) BS01 dna ? GO:0000786 ... P04908 21812398
    75240 3azi:C (2.7) BS02 dna ? GO:0000786 ... P04908 21812398
    75241 3azi:D (2.7) BS01 dna ? GO:0000786 ... P06899 21812398
    75242 3azi:D (2.7) BS02 dna ? GO:0000786 ... P06899 21812398
    75243 3azi:E (2.7) BS01 dna ? GO:0000786 ... P68431 21812398
    75244 3azi:E (2.7) BS02 dna ? GO:0000786 ... P68431 21812398
    75245 3azi:F (2.7) BS01 dna ? GO:0000781 ... P62805 21812398
    75246 3azi:F (2.7) BS02 dna ? GO:0000781 ... P62805 21812398
    75247 3azi:G (2.7) BS01 dna ? GO:0000786 ... P04908 21812398
    75248 3azi:G (2.7) BS02 dna ? GO:0000786 ... P04908 21812398
    75249 3azi:H (2.7) BS01 dna ? GO:0000786 ... P06899 21812398
    75250 3azi:H (2.7) BS02 dna ? GO:0000786 ... P06899 21812398
    75251 3azj:A (2.89) BS01 dna ? GO:0000786 ... P68431 21812398
    75252 3azj:A (2.89) BS02 dna ? GO:0000786 ... P68431 21812398
    75253 3azj:B (2.89) BS01 dna ? GO:0000781 ... P62805 21812398
    75254 3azj:B (2.89) BS02 dna ? GO:0000781 ... P62805 21812398
    75255 3azj:C (2.89) BS01 dna ? GO:0000786 ... P04908 21812398
    75256 3azj:C (2.89) BS02 dna ? GO:0000786 ... P04908 21812398
    75257 3azj:D (2.89) BS01 dna ? GO:0000786 ... P06899 21812398
    75258 3azj:D (2.89) BS02 dna ? GO:0000786 ... P06899 21812398
    75259 3azj:E (2.89) BS01 dna ? GO:0000786 ... P68431 21812398
    75260 3azj:E (2.89) BS02 dna ? GO:0000786 ... P68431 21812398
    75261 3azj:F (2.89) BS01 dna ? GO:0000781 ... P62805 21812398
    75262 3azj:F (2.89) BS02 dna ? GO:0000781 ... P62805 21812398
    75263 3azj:G (2.89) BS01 dna ? GO:0000786 ... P04908 21812398
    75264 3azj:G (2.89) BS02 dna ? GO:0000786 ... P04908 21812398
    75265 3azj:H (2.89) BS01 dna ? GO:0000786 ... P06899 21812398
    75266 3azj:H (2.89) BS02 dna ? GO:0000786 ... P06899 21812398
    75267 3azk:A (3.2) BS01 dna ? GO:0000786 ... P68431 21812398
    75268 3azk:A (3.2) BS02 dna ? GO:0000786 ... P68431 21812398
    75269 3azk:B (3.2) BS01 dna ? GO:0000781 ... P62805 21812398
    75270 3azk:B (3.2) BS02 dna ? GO:0000781 ... P62805 21812398
    75271 3azk:C (3.2) BS01 dna ? GO:0000786 ... P04908 21812398
    75272 3azk:C (3.2) BS02 dna ? GO:0000786 ... P04908 21812398
    75273 3azk:D (3.2) BS01 dna ? GO:0000786 ... P06899 21812398
    75274 3azk:D (3.2) BS02 dna ? GO:0000786 ... P06899 21812398
    75275 3azk:E (3.2) BS01 dna ? GO:0000786 ... P68431 21812398
    75276 3azk:E (3.2) BS02 dna ? GO:0000786 ... P68431 21812398
    75277 3azk:F (3.2) BS01 dna ? GO:0000781 ... P62805 21812398
    75278 3azk:F (3.2) BS02 dna ? GO:0000781 ... P62805 21812398
    75279 3azk:G (3.2) BS01 dna ? GO:0000786 ... P04908 21812398
    75280 3azk:G (3.2) BS02 dna ? GO:0000786 ... P04908 21812398
    75281 3azk:H (3.2) BS01 dna ? GO:0000786 ... P06899 21812398
    75282 3azk:H (3.2) BS02 dna ? GO:0000786 ... P06899 21812398
    75283 3azl:A (2.7) BS01 dna ? GO:0000786 ... P68431 21812398
    75284 3azl:A (2.7) BS02 dna ? GO:0000786 ... P68431 21812398
    75285 3azl:B (2.7) BS01 dna ? GO:0000781 ... P62805 21812398
    75286 3azl:B (2.7) BS02 dna ? GO:0000781 ... P62805 21812398
    75287 3azl:C (2.7) BS01 dna ? GO:0000786 ... P04908 21812398
    75288 3azl:C (2.7) BS02 dna ? GO:0000786 ... P04908 21812398
    75289 3azl:D (2.7) BS01 dna ? GO:0000786 ... P06899 21812398
    75290 3azl:D (2.7) BS02 dna ? GO:0000786 ... P06899 21812398
    75291 3azl:E (2.7) BS01 dna ? GO:0000786 ... P68431 21812398
    75292 3azl:E (2.7) BS02 dna ? GO:0000786 ... P68431 21812398
    75293 3azl:F (2.7) BS01 dna ? GO:0000781 ... P62805 21812398
    75294 3azl:F (2.7) BS02 dna ? GO:0000781 ... P62805 21812398
    75295 3azl:G (2.7) BS01 dna ? GO:0000786 ... P04908 21812398
    75296 3azl:G (2.7) BS02 dna ? GO:0000786 ... P04908 21812398
    75297 3azl:H (2.7) BS01 dna ? GO:0000786 ... P06899 21812398
    75298 3azl:H (2.7) BS02 dna ? GO:0000786 ... P06899 21812398
    75299 3azm:A (2.89) BS01 dna ? GO:0000786 ... P68431 21812398
    75300 3azm:A (2.89) BS02 dna ? GO:0000786 ... P68431 21812398
    75301 3azm:B (2.89) BS01 dna ? GO:0000781 ... P62805 21812398
    75302 3azm:C (2.89) BS01 dna ? GO:0000786 ... P04908 21812398
    75303 3azm:C (2.89) BS02 dna ? GO:0000786 ... P04908 21812398
    75304 3azm:D (2.89) BS01 dna ? GO:0000786 ... P06899 21812398
    75305 3azm:D (2.89) BS02 dna ? GO:0000786 ... P06899 21812398
    75306 3azm:E (2.89) BS01 dna ? GO:0000786 ... P68431 21812398
    75307 3azm:E (2.89) BS02 dna ? GO:0000786 ... P68431 21812398
    75308 3azm:F (2.89) BS01 dna ? GO:0000781 ... P62805 21812398
    75309 3azm:F (2.89) BS02 dna ? GO:0000781 ... P62805 21812398
    75310 3azm:G (2.89) BS01 dna ? GO:0000786 ... P04908 21812398
    75311 3azm:G (2.89) BS02 dna ? GO:0000786 ... P04908 21812398
    75312 3azm:H (2.89) BS01 dna ? GO:0000786 ... P06899 21812398
    75313 3azm:H (2.89) BS02 dna ? GO:0000786 ... P06899 21812398
    75314 3azn:A (3.0) BS01 dna ? GO:0000786 ... P68431 21812398
    75315 3azn:A (3.0) BS02 dna ? GO:0000786 ... P68431 21812398
    75316 3azn:B (3.0) BS01 dna ? GO:0000781 ... P62805 21812398
    75317 3azn:B (3.0) BS02 dna ? GO:0000781 ... P62805 21812398
    75318 3azn:C (3.0) BS01 dna ? GO:0000786 ... P04908 21812398
    75319 3azn:C (3.0) BS02 dna ? GO:0000786 ... P04908 21812398
    75320 3azn:D (3.0) BS01 dna ? GO:0000786 ... P06899 21812398
    75321 3azn:D (3.0) BS02 dna ? GO:0000786 ... P06899 21812398
    75322 3azn:E (3.0) BS01 dna ? GO:0000786 ... P68431 21812398
    75323 3azn:E (3.0) BS02 dna ? GO:0000786 ... P68431 21812398
    75324 3azn:F (3.0) BS01 dna ? GO:0000781 ... P62805 21812398
    75325 3azn:F (3.0) BS02 dna ? GO:0000781 ... P62805 21812398
    75326 3azn:G (3.0) BS01 dna ? GO:0000786 ... P04908 21812398
    75327 3azn:G (3.0) BS02 dna ? GO:0000786 ... P04908 21812398
    75328 3azn:H (3.0) BS01 dna ? GO:0000786 ... P06899 21812398
    75329 3azn:H (3.0) BS02 dna ? GO:0000786 ... P06899 21812398
    75330 3azr:A (1.71) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75331 3azr:A (1.71) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75332 3azr:B (1.71) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75333 3azr:B (1.71) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75334 3azr:B (1.71) BS03 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75335 3azs:A (1.69) BS01 MAN 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75336 3azs:A (1.69) BS02 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75337 3azs:A (1.69) BS03 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75338 3azs:B (1.69) BS01 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75339 3azs:B (1.69) BS02 MAN 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75340 3azs:B (1.69) BS03 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75341 3azt:A (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75342 3azt:A (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75343 3azt:D (1.8) BS01 GLC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75344 3azt:D (1.8) BS02 BGC 3.2.1.4 GO:0000272 ... Q9X273 21839861
    75345 3azu:A (2.1) BS01 CU ? GO:0005507 ... P00282 1901363
    75346 3azu:B (2.1) BS01 CU ? GO:0005507 ... P00282 1901363
    75347 3azu:C (2.1) BS01 CU ? GO:0005507 ... P00282 1901363
    75348 3azu:D (2.1) BS01 CU ? GO:0005507 ... P00282 1901363
    75349 3b03:A (2.2) BS01 VNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75350 3b03:B (2.2) BS01 VNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75351 3b03:C (2.2) BS01 VNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75352 3b03:D (2.2) BS01 VNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75353 3b04:A (2.3) BS01 OOP 5.3.3.2 GO:0000287 ... P61615 22158896
    75354 3b04:B (2.3) BS01 OOP 5.3.3.2 GO:0000287 ... P61615 22158896
    75355 3b04:C (2.3) BS01 OOP 5.3.3.2 GO:0000287 ... P61615 22158896
    75356 3b04:D (2.3) BS01 OOP 5.3.3.2 GO:0000287 ... P61615 22158896
    75357 3b04:D (2.3) BS02 MG 5.3.3.2 GO:0000287 ... P61615 22158896
    75358 3b05:A (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75359 3b05:A (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    75360 3b05:B (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75361 3b05:B (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    75362 3b05:C (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75363 3b05:C (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    75364 3b05:D (2.2) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75365 3b05:D (2.2) BS02 IPE 5.3.3.2 GO:0000287 ... P61615 22158896
    75366 3b06:A (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75367 3b06:A (2.29) BS02 DMA 5.3.3.2 GO:0000287 ... P61615 22158896
    75368 3b06:B (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75369 3b06:B (2.29) BS02 DMA 5.3.3.2 GO:0000287 ... P61615 22158896
    75370 3b06:C (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75371 3b06:C (2.29) BS02 DMA 5.3.3.2 GO:0000287 ... P61615 22158896
    75372 3b06:D (2.29) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22158896
    75373 3b06:D (2.29) BS02 DMA 5.3.3.2 GO:0000287 ... P61615 22158896
    75374 3b0i:A (1.8) BS01 CA ? GO:0000139 ... P00709 23155056
    75375 3b0k:A (1.6) BS01 CA ? GO:0003796 ... P00712 23155056
    75376 3b0k:B (1.6) BS01 CA ? GO:0003796 ... P00712 23155056
    75377 3b0o:A (1.61) BS01 CA ? GO:0000139 ... P00709 23155056
    75378 3b0o:B (1.61) BS01 CA ? GO:0000139 ... P00709 23155056
    75379 3b0q:A (2.1) BS01 MC5 ? GO:0003677 ... P37231 N/A
    75380 3b0r:A (2.15) BS01 GW9 ? GO:0003677 ... P37231 N/A BindingDB: EC50=2.0nM
    75381 3b0r:B (2.15) BS01 GW9 ? GO:0003677 ... P37231 N/A BindingDB: EC50=2.0nM
    75382 3b0w:A (2.2) BS01 DGX ? GO:0003677 ... P51449 21733845 PDBbind: -logKd/Ki=5.70, IC50=2uM
    BindingDB: IC50=2000nM, Kd=109nM
    75383 3b0w:B (2.2) BS01 DGX ? GO:0003677 ... P51449 21733845 BindingDB: IC50=2000nM, Kd=109nM
    75384 3b0x:A (1.36) BS01 ZN 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75385 3b0x:A (1.36) BS02 ZN 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75386 3b0x:A (1.36) BS03 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75387 3b0x:A (1.36) BS04 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75388 3b0x:A (1.36) BS05 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75389 3b0x:A (1.36) BS06 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75390 3b0x:A (1.36) BS07 DGT 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75391 3b0y:A (1.45) BS01 DGT 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75392 3b0y:A (1.45) BS02 ZN 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75393 3b0y:A (1.45) BS03 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75394 3b0y:A (1.45) BS04 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75395 3b0y:A (1.45) BS05 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75396 3b0y:A (1.45) BS06 CA 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    75397 3b1m:A (1.6) BS01 peptide ? GO:0003677 ... P37231 21720019
    75398 3b1m:A (1.6) BS02 KRC ? GO:0003677 ... P37231 21720019 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    75399 3b1t:A (2.5) BS01 YCL 3.5.3.15 GO:0004668 ... Q9UM07 21882827 PDBbind: -logKd/Ki=5.66, IC50=2.2uM
    75400 3b1t:A (2.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 21882827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417