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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    73401 3a0h:B (4.0) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    73402 3a0h:B (4.0) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    73403 3a0h:B (4.0) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    73404 3a0h:B (4.0) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    73405 3a0h:B (4.0) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    73406 3a0h:B (4.0) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    73407 3a0h:B (4.0) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    73408 3a0h:B (4.0) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    73409 3a0h:B (4.0) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    73410 3a0h:B (4.0) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    73411 3a0h:B (4.0) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    73412 3a0h:C (4.0) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    73413 3a0h:C (4.0) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    73414 3a0h:C (4.0) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    73415 3a0h:C (4.0) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    73416 3a0h:C (4.0) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    73417 3a0h:C (4.0) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    73418 3a0h:C (4.0) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    73419 3a0h:C (4.0) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    73420 3a0h:C (4.0) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    73421 3a0h:C (4.0) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    73422 3a0h:C (4.0) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    73423 3a0h:C (4.0) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    73424 3a0h:C (4.0) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    73425 3a0h:C (4.0) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    73426 3a0h:D (4.0) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73427 3a0h:D (4.0) BS02 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73428 3a0h:D (4.0) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73429 3a0h:D (4.0) BS04 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73430 3a0h:D (4.0) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73431 3a0h:D (4.0) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73432 3a0h:D (4.0) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73433 3a0h:D (4.0) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73434 3a0h:D (4.0) BS09 IOD 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73435 3a0h:E (4.0) BS01 peptide ? GO:0005506 ... P12238 19433803
    73436 3a0h:E (4.0) BS02 HEM ? GO:0005506 ... P12238 19433803
    73437 3a0h:F (4.0) BS01 HEM ? GO:0005506 ... P12239 19433803
    73438 3a0h:H (4.0) BS01 CLA ? GO:0009523 ... P19052 19433803
    73439 3a0h:H (4.0) BS02 CLA ? GO:0009523 ... P19052 19433803
    73440 3a0h:H (4.0) BS03 CLA ? GO:0009523 ... P19052 19433803
    73441 3a0h:I (4.0) BS01 CLA ? GO:0005737 ... P12240 19433803
    73442 3a0h:K (4.0) BS01 peptide ? GO:0005737 ... P19054 19433803
    73443 3a0h:K (4.0) BS02 CLA ? GO:0005737 ... P19054 19433803
    73444 3a0h:K (4.0) BS03 CLA ? GO:0005737 ... P19054 19433803
    73445 3a0h:M (4.0) BS01 CLA ? GO:0005737 ... P12312 19433803
    73446 3a0h:T (4.0) BS01 IOD ? GO:0009523 ... P12313 19433803
    73447 3a0h:V (4.0) BS01 HEM ? GO:0005506 ... P0A387 19433803
    73448 3a0h:Z (4.0) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    73449 3a0h:a (4.0) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    73450 3a0h:a (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    73451 3a0h:a (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73452 3a0h:a (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73453 3a0h:a (4.0) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73454 3a0h:a (4.0) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73455 3a0h:a (4.0) BS07 IOD 1.10.3.9 GO:0005506 ... P51765 19433803
    73456 3a0h:a (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73457 3a0h:a (4.0) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73458 3a0h:a (4.0) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73459 3a0h:a (4.0) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73460 3a0h:b (4.0) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    73461 3a0h:b (4.0) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    73462 3a0h:b (4.0) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    73463 3a0h:b (4.0) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    73464 3a0h:b (4.0) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    73465 3a0h:b (4.0) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    73466 3a0h:b (4.0) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    73467 3a0h:b (4.0) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    73468 3a0h:b (4.0) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    73469 3a0h:b (4.0) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    73470 3a0h:b (4.0) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    73471 3a0h:b (4.0) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    73472 3a0h:b (4.0) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    73473 3a0h:b (4.0) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    73474 3a0h:b (4.0) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    73475 3a0h:c (4.0) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    73476 3a0h:c (4.0) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    73477 3a0h:c (4.0) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    73478 3a0h:c (4.0) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    73479 3a0h:c (4.0) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    73480 3a0h:c (4.0) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    73481 3a0h:c (4.0) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    73482 3a0h:c (4.0) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    73483 3a0h:c (4.0) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    73484 3a0h:c (4.0) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    73485 3a0h:c (4.0) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    73486 3a0h:c (4.0) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    73487 3a0h:c (4.0) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    73488 3a0h:c (4.0) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    73489 3a0h:d (4.0) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73490 3a0h:d (4.0) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73491 3a0h:d (4.0) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73492 3a0h:d (4.0) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73493 3a0h:d (4.0) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73494 3a0h:d (4.0) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73495 3a0h:d (4.0) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73496 3a0h:d (4.0) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73497 3a0h:d (4.0) BS09 IOD 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73498 3a0h:e (4.0) BS01 peptide ? GO:0005506 ... P12238 19433803
    73499 3a0h:e (4.0) BS02 HEM ? GO:0005506 ... P12238 19433803
    73500 3a0h:f (4.0) BS01 HEM ? GO:0005506 ... P12239 19433803
    73501 3a0h:h (4.0) BS01 CLA ? GO:0009523 ... P19052 19433803
    73502 3a0h:h (4.0) BS02 CLA ? GO:0009523 ... P19052 19433803
    73503 3a0h:h (4.0) BS03 CLA ? GO:0009523 ... P19052 19433803
    73504 3a0h:i (4.0) BS01 CLA ? GO:0005737 ... P12240 19433803
    73505 3a0h:k (4.0) BS01 peptide ? GO:0005737 ... P19054 19433803
    73506 3a0h:k (4.0) BS02 CLA ? GO:0005737 ... P19054 19433803
    73507 3a0h:k (4.0) BS03 CLA ? GO:0005737 ... P19054 19433803
    73508 3a0h:m (4.0) BS01 CLA ? GO:0005737 ... P12312 19433803
    73509 3a0h:v (4.0) BS01 HEM ? GO:0005506 ... P0A387 19433803
    73510 3a0h:z (4.0) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    73511 3a0i:X (2.2) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 19362831
    73512 3a0i:X (2.2) BS02 AJI 2.7.1.1 GO:0001678 ... P35557 19362831 BindingDB: EC50=250nM
    73513 3a1b:A (2.292) BS01 ZN 2.1.1.-
    2.1.1.37    		 GO:0000786 ... P68431
    Q9Y6K1    		 19834512
    73514 3a1b:A (2.292) BS02 ZN 2.1.1.-
    2.1.1.37    		 GO:0000786 ... P68431
    Q9Y6K1    		 19834512
    73515 3a1b:A (2.292) BS03 ZN 2.1.1.-
    2.1.1.37    		 GO:0000786 ... P68431
    Q9Y6K1    		 19834512
    73516 3a1c:A (1.85) BS01 ACP 7.2.2.8 GO:0000166 ... O29777 19478797 MOAD: Kd~0.1mM
    PDBbind: -logKd/Ki=4.00, Kd=0.1mM
    73517 3a1c:B (1.85) BS01 ACP 7.2.2.8 GO:0000166 ... O29777 19478797 MOAD: Kd~0.1mM
    73518 3a1d:A (1.85) BS01 ADP 7.2.2.8 GO:0000166 ... O29777 19478797 PDBbind: -logKd/Ki=4.12, Kd=75uM
    73519 3a1d:B (1.85) BS01 ADP 7.2.2.8 GO:0000166 ... O29777 19478797
    73520 3a1e:A (1.95) BS01 ACP 7.2.2.8 GO:0000166 ... O29777 19478797 MOAD: Kd~2.2mM
    PDBbind: -logKd/Ki=2.66, Kd=2.2mM
    73521 3a1e:B (1.95) BS01 ACP 7.2.2.8 GO:0000166 ... O29777 19478797 MOAD: Kd~2.2mM
    73522 3a20:A (1.6) BS01 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    73523 3a20:A (1.6) BS02 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    73524 3a20:B (1.6) BS01 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    73525 3a20:B (1.6) BS02 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    73526 3a25:A (2.3) BS01 SAM 2.5.1.114 GO:0005737 ... O58523 19717466
    73527 3a26:A (2.5) BS01 MTA 2.5.1.114 GO:0005737 ... O58523 19717466
    73528 3a27:A (2.005) BS01 SAM 2.5.1.114 GO:0005737 ... Q58952 19717466
    73529 3a29:A (2.6) BS01 2T0 3.1.3.11 GO:0000122 ... P09467 19762234 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    73530 3a29:B (2.6) BS01 2T0 3.1.3.11 GO:0000122 ... P09467 19762234 BindingDB: IC50=13nM
    73531 3a29:C (2.6) BS01 2T0 3.1.3.11 GO:0000122 ... P09467 19762234 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    73532 3a29:D (2.6) BS01 2T0 3.1.3.11 GO:0000122 ... P09467 19762234 BindingDB: IC50=13nM
    73533 3a2b:A (2.3) BS01 SER 2.3.1.50 GO:0004758 ... A7BFV6 19564159
    73534 3a2b:A (2.3) BS02 PLP 2.3.1.50 GO:0004758 ... A7BFV6 19564159
    73535 3a2g:A (1.75) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 20099839
    73536 3a2g:A (1.75) BS02 LCY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 20099839
    73537 3a2k:A (3.65) BS01 rna 6.3.4.19 GO:0000166 ... Q5L3T3 19847269
    73538 3a2k:A (3.65) BS02 rna 6.3.4.19 GO:0000166 ... Q5L3T3 19847269
    73539 3a2k:B (3.65) BS01 rna 6.3.4.19 GO:0000166 ... Q5L3T3 19847269
    73540 3a2k:B (3.65) BS02 rna 6.3.4.19 GO:0000166 ... Q5L3T3 19847269
    73541 3a2s:X (2.2) BS01 GLC ? GO:0006811 ... Q5RT80 20351243
    73542 3a2s:X (2.2) BS02 FRU ? GO:0006811 ... Q5RT80 20351243
    73543 3a31:A (2.5) BS01 ZN 6.1.1.3 GO:0000049 ... Q9YDW0 19761773
    73544 3a32:A (2.3) BS01 ZN 6.1.1.3 GO:0000049 ... Q9YDW0 19761773
    73545 3a34:A (1.65) BS01 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    73546 3a34:A (1.65) BS02 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    73547 3a34:A (1.65) BS03 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    73548 3a34:A (1.65) BS04 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    73549 3a36:A (2.8) BS01 ZN 3.6.-.- GO:0000750 ... Q12154 20015340
    73550 3a36:B (2.8) BS01 ZN 3.6.-.- GO:0000750 ... Q12154 20015340
    73551 3a37:A (3.0) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 20015340
    73552 3a37:A (3.0) BS02 ZN 3.6.-.- GO:0000750 ... Q12154 20015340
    73553 3a37:B (3.0) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 20015340
    73554 3a3c:A (2.5) BS01 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    73555 3a3c:A (2.5) BS02 GLC ? GO:0005515 ... P0AEX9
    P36046    		 19667201
    73556 3a3k:A (2.5) BS01 BR 4.6.1.2 GO:0016020 ... P18910 20066666
    73557 3a3k:B (2.5) BS01 BR 4.6.1.2 GO:0016020 ... P18910 20066666
    73558 3a3y:A (2.8) BS01 MF4 ? GO:0000166 ... Q4H132 19666591
    73559 3a3y:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 19666591
    73560 3a3y:A (2.8) BS03 K ? GO:0000166 ... Q4H132 19666591
    73561 3a3y:A (2.8) BS04 K ? GO:0000166 ... Q4H132 19666591
    73562 3a3y:A (2.8) BS05 K ? GO:0000166 ... Q4H132 19666591
    73563 3a3y:A (2.8) BS06 OBN ? GO:0000166 ... Q4H132 19666591 PDBbind: -logKd/Ki=9.15, Kd=0.7nM
    73564 3a3y:A (2.8) BS07 CLR ? GO:0000166 ... Q4H132 19666591
    73565 3a47:A (1.59) BS01 CA 3.2.1.10 GO:0000023 ... P53051 N/A
    73566 3a4a:A (1.6) BS01 GLC 3.2.1.10 GO:0000023 ... P53051 20812985
    73567 3a4a:A (1.6) BS02 CA 3.2.1.10 GO:0000023 ... P53051 20812985
    73568 3a4g:A (1.75) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73569 3a4h:A (3.06) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73570 3a4t:A (2.3) BS01 SFG 2.1.1.- GO:0001510 ... Q60343 20600111
    73571 3a4t:B (2.3) BS01 SFG 2.1.1.- GO:0001510 ... Q60343 20600111
    73572 3a4u:A (1.84) BS01 CA ? GO:0016020 ... P49257 20142513
    73573 3a4u:A (1.84) BS02 CA ? GO:0016020 ... P49257 20142513
    73574 3a4u:B (1.84) BS01 CA ? GO:0005509 ... Q8NI22 20142513
    73575 3a4u:B (1.84) BS02 CA ? GO:0005509 ... Q8NI22 20142513
    73576 3a4y:A (2.5) BS01 ZN 3.1.-.- GO:0003723 ... Q5SLP1 N/A
    73577 3a4y:B (2.5) BS01 ZN 3.1.-.- GO:0003723 ... Q5SLP1 N/A
    73578 3a4y:C (2.5) BS01 ZN 3.1.-.- GO:0003723 ... Q5SLP1 N/A
    73579 3a4y:D (2.5) BS01 ZN 3.1.-.- GO:0003723 ... Q5SLP1 N/A
    73580 3a4z:A (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73581 3a4z:B (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73582 3a4z:C (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73583 3a4z:D (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73584 3a4z:E (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73585 3a50:A (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73586 3a50:A (2.05) BS02 VD3 1.14.15.15 GO:0004497 ... C4B644 20667833
    73587 3a50:B (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73588 3a50:B (2.05) BS02 VD3 1.14.15.15 GO:0004497 ... C4B644 20667833
    73589 3a50:C (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73590 3a50:C (2.05) BS02 VD3 1.14.15.15 GO:0004497 ... C4B644 20667833
    73591 3a50:D (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73592 3a50:D (2.05) BS02 VD3 1.14.15.15 GO:0004497 ... C4B644 20667833
    73593 3a50:E (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73594 3a50:E (2.05) BS02 VD3 1.14.15.15 GO:0004497 ... C4B644 20667833
    73595 3a51:A (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73596 3a51:A (2.0) BS02 VDY 1.14.15.15 GO:0004497 ... C4B644 20667833
    73597 3a51:B (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73598 3a51:B (2.0) BS02 VDY 1.14.15.15 GO:0004497 ... C4B644 20667833
    73599 3a51:C (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    73600 3a51:C (2.0) BS02 VDY 1.14.15.15 GO:0004497 ... C4B644 20667833
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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