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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    73201 2zz4:B (1.67) BS02 6CN 4.1.1.23 GO:0004590 ... O26232 19236876 BindingDB: Ki=29000nM
    73202 2zz5:A (1.56) BS01 6CN 4.1.1.23 GO:0004590 ... O26232 19236876 BindingDB: Ki=29000nM
    73203 2zz5:A (1.56) BS02 6CN 4.1.1.23 GO:0004590 ... O26232 19236876 BindingDB: Ki=29000nM
    73204 2zz5:B (1.56) BS01 6CN 4.1.1.23 GO:0004590 ... O26232 19236876 BindingDB: Ki=29000nM
    73205 2zz5:B (1.56) BS02 6CN 4.1.1.23 GO:0004590 ... O26232 19236876 BindingDB: Ki=29000nM
    73206 2zz6:A (1.66) BS01 6AZ 4.1.1.23 GO:0004590 ... O26232 19236876 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    BindingDB: Ki=190nM
    73207 2zz6:A (1.66) BS02 6AZ 4.1.1.23 GO:0004590 ... O26232 19236876 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    BindingDB: Ki=190nM
    73208 2zz6:B (1.66) BS01 6AZ 4.1.1.23 GO:0004590 ... O26232 19236876 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    BindingDB: Ki=190nM
    73209 2zz6:B (1.66) BS02 6AZ 4.1.1.23 GO:0004590 ... O26232 19236876 PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    BindingDB: Ki=190nM
    73210 2zz7:A (1.58) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 19236876
    73211 2zza:A (2.0) BS01 NAP 1.5.1.3 GO:0000166 ... Q70YQ6 N/A
    73212 2zza:B (2.0) BS01 NAP 1.5.1.3 GO:0000166 ... Q70YQ6 N/A
    73213 2zze:A (2.16) BS01 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73214 2zze:B (2.16) BS01 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73215 2zzf:A (2.7) BS01 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73216 2zzf:A (2.7) BS02 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73217 2zzg:A (3.1) BS01 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73218 2zzg:A (3.1) BS02 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73219 2zzg:A (3.1) BS03 A5A 6.1.1.7 GO:0000166 ... O58035 19549823
    73220 2zzg:B (3.1) BS01 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73221 2zzg:B (3.1) BS02 ZN 6.1.1.7 GO:0000166 ... O58035 19549823
    73222 2zzg:B (3.1) BS03 A5A 6.1.1.7 GO:0000166 ... O58035 19549823
    73223 2zzl:A (2.03) BS01 GLC ? GO:0005216 ... P02945 19712684
    73224 2zzl:A (2.03) BS02 RET ? GO:0005216 ... P02945 19712684
    73225 2zzm:A (2.65) BS01 rna 2.1.1.228 GO:0002939 ... Q58293 19749755
    73226 2zzm:A (2.65) BS02 SAM 2.1.1.228 GO:0002939 ... Q58293 19749755
    73227 2zzn:A (2.95) BS01 rna 2.1.1.228 GO:0002939 ... Q58293 19749755
    73228 2zzn:A (2.95) BS02 rna 2.1.1.228 GO:0002939 ... Q58293 19749755
    73229 2zzn:A (2.95) BS03 SAM 2.1.1.228 GO:0002939 ... Q58293 19749755
    73230 2zzn:B (2.95) BS01 rna 2.1.1.228 GO:0002939 ... Q58293 19749755
    73231 2zzn:B (2.95) BS02 rna 2.1.1.228 GO:0002939 ... Q58293 19749755
    73232 2zzn:B (2.95) BS03 SAM 2.1.1.228 GO:0002939 ... Q58293 19749755
    73233 2zzu:L (2.5) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 20045964
    73234 2zzu:L (2.5) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 20045964
    73235 2zzu:L (2.5) BS03 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73236 2zzu:L (2.5) BS04 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73237 2zzu:L (2.5) BS05 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73238 2zzu:L (2.5) BS06 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73239 2zzu:L (2.5) BS07 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73240 2zzu:L (2.5) BS08 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73241 2zzu:L (2.5) BS09 CA 3.4.21.21 GO:0005509 ... P08709 20045964
    73242 2zzv:A (1.4) BS01 CA ? GO:0015727 ... Q5SK82 19631222
    73243 2zzv:B (1.4) BS01 CA ? GO:0015727 ... Q5SK82 19631222
    73244 2zzw:A (1.95) BS01 ZN ? GO:0015727 ... Q5SK82 19631222
    73245 2zzw:B (1.95) BS01 ZN ? GO:0015727 ... Q5SK82 19631222
    73246 2zzx:C (1.75) BS01 CA ? GO:0015727 ... Q5SK82 19631222
    73247 351c:A (1.6) BS01 HEM ? GO:0005506 ... P00099 6283101
    73248 35c8:L (2.0) BS01 NOX ? GO:0005576 ... P01837 10353817
    73249 3a04:A (1.97) BS01 SF4 6.1.1.2 GO:0000166 ... Q9Y924 N/A
    73250 3a05:A (2.2) BS01 TRP 6.1.1.2 GO:0000166 ... Q9Y924 N/A
    73251 3a05:A (2.2) BS02 SF4 6.1.1.2 GO:0000166 ... Q9Y924 N/A
    73252 3a0b:A (3.7) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    73253 3a0b:A (3.7) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    73254 3a0b:A (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73255 3a0b:A (3.7) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73256 3a0b:A (3.7) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73257 3a0b:A (3.7) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73258 3a0b:A (3.7) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73259 3a0b:A (3.7) BS08 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    73260 3a0b:A (3.7) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73261 3a0b:A (3.7) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73262 3a0b:B (3.7) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    73263 3a0b:B (3.7) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    73264 3a0b:B (3.7) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    73265 3a0b:B (3.7) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    73266 3a0b:B (3.7) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    73267 3a0b:B (3.7) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    73268 3a0b:B (3.7) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    73269 3a0b:B (3.7) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    73270 3a0b:B (3.7) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    73271 3a0b:B (3.7) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    73272 3a0b:B (3.7) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    73273 3a0b:B (3.7) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    73274 3a0b:B (3.7) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    73275 3a0b:B (3.7) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    73276 3a0b:B (3.7) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    73277 3a0b:B (3.7) BS16 CLA ? GO:0009521 ... D0VWR1 19433803
    73278 3a0b:C (3.7) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    73279 3a0b:C (3.7) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    73280 3a0b:C (3.7) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    73281 3a0b:C (3.7) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    73282 3a0b:C (3.7) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    73283 3a0b:C (3.7) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    73284 3a0b:C (3.7) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    73285 3a0b:C (3.7) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    73286 3a0b:C (3.7) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    73287 3a0b:C (3.7) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    73288 3a0b:C (3.7) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    73289 3a0b:C (3.7) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    73290 3a0b:C (3.7) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    73291 3a0b:C (3.7) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    73292 3a0b:D (3.7) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73293 3a0b:D (3.7) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73294 3a0b:D (3.7) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73295 3a0b:D (3.7) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73296 3a0b:D (3.7) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73297 3a0b:D (3.7) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73298 3a0b:D (3.7) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73299 3a0b:D (3.7) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73300 3a0b:E (3.7) BS01 peptide ? GO:0005506 ... P12238 19433803
    73301 3a0b:E (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    73302 3a0b:F (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    73303 3a0b:H (3.7) BS01 CLA ? GO:0009523 ... P19052 19433803
    73304 3a0b:H (3.7) BS02 CLA ? GO:0009523 ... P19052 19433803
    73305 3a0b:H (3.7) BS03 CLA ? GO:0009523 ... P19052 19433803
    73306 3a0b:I (3.7) BS01 CLA ? GO:0005737 ... P12240 19433803
    73307 3a0b:I (3.7) BS02 CLA ? GO:0005737 ... P12240 19433803
    73308 3a0b:J (3.7) BS01 peptide ? GO:0009523 ... Q7DGD4 19433803
    73309 3a0b:K (3.7) BS01 peptide ? GO:0005737 ... P19054 19433803
    73310 3a0b:K (3.7) BS02 CLA ? GO:0005737 ... P19054 19433803
    73311 3a0b:K (3.7) BS03 CLA ? GO:0005737 ... P19054 19433803
    73312 3a0b:K (3.7) BS04 CLA ? GO:0005737 ... P19054 19433803
    73313 3a0b:L (3.7) BS01 CLA ? GO:0005737 ... P12241 19433803
    73314 3a0b:M (3.7) BS01 CLA ? GO:0005737 ... P12312 19433803
    73315 3a0b:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    73316 3a0b:X (3.7) BS01 CLA ? GO:0009523 ... D0VWR4 19433803
    73317 3a0b:Z (3.7) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    73318 3a0b:Z (3.7) BS02 CLA ? GO:0009523 ... D0VWR5 19433803
    73319 3a0b:a (3.7) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    73320 3a0b:a (3.7) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    73321 3a0b:a (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73322 3a0b:a (3.7) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73323 3a0b:a (3.7) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73324 3a0b:a (3.7) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73325 3a0b:a (3.7) BS07 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    73326 3a0b:a (3.7) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73327 3a0b:a (3.7) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73328 3a0b:a (3.7) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73329 3a0b:a (3.7) BS11 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73330 3a0b:b (3.7) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    73331 3a0b:b (3.7) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    73332 3a0b:b (3.7) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    73333 3a0b:b (3.7) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    73334 3a0b:b (3.7) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    73335 3a0b:b (3.7) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    73336 3a0b:b (3.7) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    73337 3a0b:b (3.7) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    73338 3a0b:b (3.7) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    73339 3a0b:b (3.7) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    73340 3a0b:b (3.7) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    73341 3a0b:b (3.7) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    73342 3a0b:b (3.7) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    73343 3a0b:b (3.7) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    73344 3a0b:b (3.7) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    73345 3a0b:c (3.7) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    73346 3a0b:c (3.7) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    73347 3a0b:c (3.7) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    73348 3a0b:c (3.7) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    73349 3a0b:c (3.7) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    73350 3a0b:c (3.7) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    73351 3a0b:c (3.7) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    73352 3a0b:c (3.7) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    73353 3a0b:c (3.7) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    73354 3a0b:c (3.7) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    73355 3a0b:c (3.7) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    73356 3a0b:c (3.7) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    73357 3a0b:c (3.7) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    73358 3a0b:c (3.7) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    73359 3a0b:d (3.7) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73360 3a0b:d (3.7) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73361 3a0b:d (3.7) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73362 3a0b:d (3.7) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73363 3a0b:d (3.7) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73364 3a0b:d (3.7) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73365 3a0b:d (3.7) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73366 3a0b:d (3.7) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    73367 3a0b:e (3.7) BS01 peptide ? GO:0005506 ... P12238 19433803
    73368 3a0b:e (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    73369 3a0b:f (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    73370 3a0b:h (3.7) BS01 CLA ? GO:0009523 ... P19052 19433803
    73371 3a0b:h (3.7) BS02 CLA ? GO:0009523 ... P19052 19433803
    73372 3a0b:h (3.7) BS03 CLA ? GO:0009523 ... P19052 19433803
    73373 3a0b:i (3.7) BS01 CLA ? GO:0005737 ... P12240 19433803
    73374 3a0b:i (3.7) BS02 CLA ? GO:0005737 ... P12240 19433803
    73375 3a0b:k (3.7) BS01 peptide ? GO:0005737 ... P19054 19433803
    73376 3a0b:k (3.7) BS02 CLA ? GO:0005737 ... P19054 19433803
    73377 3a0b:l (3.7) BS01 CLA ? GO:0005737 ... P12241 19433803
    73378 3a0b:m (3.7) BS01 CLA ? GO:0005737 ... P12312 19433803
    73379 3a0b:v (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    73380 3a0b:x (3.7) BS01 CLA ? GO:0009523 ... D0VWR4 19433803
    73381 3a0b:z (3.7) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    73382 3a0b:z (3.7) BS02 CLA ? GO:0009523 ... D0VWR5 19433803
    73383 3a0g:A (2.5) BS01 HEM ? GO:0004601 ... P01947 N/A
    73384 3a0g:A (2.5) BS02 OXY ? GO:0004601 ... P01947 N/A
    73385 3a0g:B (2.5) BS01 HEM ? GO:0004601 ... P02095 N/A
    73386 3a0g:B (2.5) BS02 OXY ? GO:0004601 ... P02095 N/A
    73387 3a0h:A (4.0) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    73388 3a0h:A (4.0) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73389 3a0h:A (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73390 3a0h:A (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73391 3a0h:A (4.0) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73392 3a0h:A (4.0) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73393 3a0h:A (4.0) BS07 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    73394 3a0h:A (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73395 3a0h:A (4.0) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    73396 3a0h:A (4.0) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73397 3a0h:B (4.0) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    73398 3a0h:B (4.0) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    73399 3a0h:B (4.0) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    73400 3a0h:B (4.0) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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