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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    591601 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    591602 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    591603 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    591604 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    591605 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    591606 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    591607 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    591608 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    591609 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    591610 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    591611 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    591612 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    591613 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    591614 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    591615 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    591616 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    591617 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    591618 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    591619 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    591620 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    591621 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    591622 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    591623 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    591624 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    591625 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    591626 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    591627 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    591628 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    591629 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    591630 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    591631 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    591632 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    591633 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    591634 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    591635 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    591636 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    591637 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    591638 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    591639 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    591640 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    591641 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    591642 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    591643 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    591644 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    591645 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    591646 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    591647 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    591648 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    591649 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    591650 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    591651 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    591652 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    591653 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    591654 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    591655 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    591656 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    591657 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    591658 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    591659 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    591660 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    591661 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    591662 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    591663 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    591664 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    591665 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    591666 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    591667 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    591668 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    591669 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    591670 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    591671 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    591672 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    591673 8xxn:3N (3.6) BS01 rna ? GO:0001732 ... O15371 38641729
    591674 8xxn:C1 (3.6) BS01 rna ? GO:0003723 ... P41567 38641729
    591675 8xxn:CD (3.6) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    591676 8xxn:SA (3.6) BS01 rna ? GO:0000028 ... P08865 38641729
    591677 8xxn:SB (3.6) BS01 rna ? GO:0002181 ... P61247 38641729
    591678 8xxn:SC (3.6) BS01 rna ? GO:0002181 ... P15880 38641729
    591679 8xxn:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    591680 8xxn:SE (3.6) BS01 rna ? GO:0002181 ... P62701 38641729
    591681 8xxn:SF (3.6) BS01 rna ? GO:0000028 ... P46782 38641729
    591682 8xxn:SG (3.6) BS01 rna ? GO:0000082 ... P62753 38641729
    591683 8xxn:SH (3.6) BS01 rna ? GO:0001843 ... P62081 38641729
    591684 8xxn:SI (3.6) BS01 rna ? GO:0000462 ... P62241 38641729
    591685 8xxn:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 38641729
    591686 8xxn:SK (3.6) BS01 rna ? GO:0002181 ... P46783 38641729
    591687 8xxn:SL (3.6) BS01 rna ? GO:0002181 ... P62280 38641729
    591688 8xxn:SM (3.6) BS01 rna ? GO:0002181 ... P25398 38641729
    591689 8xxn:SN (3.6) BS01 rna ? GO:0002181 ... P62277 38641729
    591690 8xxn:SO (3.6) BS01 rna ? GO:0000028 ... P62263 38641729
    591691 8xxn:SP (3.6) BS01 rna ? GO:0000028 ... P62841 38641729
    591692 8xxn:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 38641729
    591693 8xxn:SR (3.6) BS01 rna ? GO:0002181 ... P08708 38641729
    591694 8xxn:SS (3.6) BS01 rna ? GO:0002181 ... P62269 38641729
    591695 8xxn:ST (3.6) BS01 rna ? GO:0000028 ... P39019 38641729
    591696 8xxn:SU (3.6) BS01 rna ? GO:0002181 ... P60866 38641729
    591697 8xxn:SW (3.6) BS01 rna ? GO:0002181 ... P62244 38641729
    591698 8xxn:SX (3.6) BS01 rna ? GO:0002181 ... P62266 38641729
    591699 8xxn:SY (3.6) BS01 rna ? GO:0002181 ... P62847 38641729
    591700 8xxn:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 38641729
    591701 8xxn:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 38641729
    591702 8xxn:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 38641729
    591703 8xxn:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 38641729
    591704 8xxn:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 38641729
    591705 8xxn:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 38641729
    591706 8xxn:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 38641729
    591707 8xxn:Se (3.6) BS01 rna ? GO:0003735 ... P62861 38641729
    591708 8xxn:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 38641729
    591709 8xxn:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 38641729
    591710 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    591711 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    591712 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    591713 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    591714 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    591715 8xz3:C (3.6) BS01 rna N/A GO:0002181 ... A0QSD4 39029461
    591716 8xz3:D (3.6) BS01 rna N/A GO:0003735 ... A0QSD1 39029461
    591717 8xz3:E (3.6) BS01 rna N/A GO:0003735 ... A0QSD2 39029461
    591718 8xz3:F (3.6) BS01 rna N/A GO:0000049 ... A0QSG1 39029461
    591719 8xz3:F (3.6) BS02 rna N/A GO:0000049 ... A0QSG1 39029461
    591720 8xz3:G (3.6) BS01 rna N/A GO:0002181 ... A0QSG4 39029461
    591721 8xz3:H (3.6) BS01 rna N/A GO:0005840 ... A0R7F6 39029461
    591722 8xz3:J (3.6) BS01 rna N/A GO:0003735 ... A0QS45 39029461
    591723 8xz3:K (3.6) BS01 rna N/A GO:0003729 ... A0QSP8 39029461
    591724 8xz3:L (3.6) BS01 rna N/A GO:0003735 ... A0QSF9 39029461
    591725 8xz3:M (3.6) BS01 rna N/A GO:0003735 ... I7G436 39029461
    591726 8xz3:N (3.6) BS01 rna N/A GO:0000049 ... A0QSD8 39029461
    591727 8xz3:P (3.6) BS01 rna N/A GO:0005737 ... I7FGD9 39029461
    591728 8xz3:P (3.6) BS02 rna N/A GO:0005737 ... I7FGD9 39029461
    591729 8xz3:Q (3.6) BS01 rna N/A GO:0003735 ... A0QV42 39029461
    591730 8xz3:R (3.6) BS01 rna N/A GO:0000027 ... A0QYU6 39029461
    591731 8xz3:S (3.6) BS01 rna N/A GO:0003735 ... A0R151 39029461
    591732 8xz3:U (3.6) BS01 rna N/A GO:0000027 ... A0QSD3 39029461
    591733 8xz3:V (3.6) BS01 rna N/A GO:0005840 ... A0QSG0 39029461
    591734 8xz3:X (3.6) BS01 rna N/A GO:0003735 ... A0R150 39029461
    591735 8xz3:Y (3.6) BS01 rna N/A GO:0005840 ... I7FJ52 39029461
    591736 8xz3:a (3.6) BS01 rna N/A GO:0005840 ... A0QSG7 39029461
    591737 8xz3:a (3.6) BS02 rna N/A GO:0005840 ... A0QSG7 39029461
    591738 8xz3:b (3.6) BS01 rna N/A GO:0005840 ... A0R3I9 39029461
    591739 8xz3:d (3.6) BS01 rna N/A GO:0005840 ... A0R7K0 39029461
    591740 8xz3:e (3.6) BS01 rna N/A GO:0003735 ... A0QYU7 39029461
    591741 8xz3:f (3.6) BS01 rna N/A GO:0005737 ... A0QSL4 39029461
    591742 8xzf:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    591743 8xzg:R (3.2) BS01 peptide ? GO:0001525 ... P35414 38428423
    591744 8xzh:R (2.6) BS01 peptide ? GO:0001525 ... P35414 38428423
    591745 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    591746 8xzj:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    591747 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    591748 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    591749 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    591750 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    591751 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    591752 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    591753 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    591754 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    591755 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    591756 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    591757 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    591758 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    591759 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    591760 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    591761 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    591762 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    591763 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    591764 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    591765 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    591766 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    591767 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    591768 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    591769 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    591770 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    591771 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    591772 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    591773 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    591774 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    591775 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    591776 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    591777 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    591778 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    591779 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    591780 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    591781 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    591782 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    591783 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    591784 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    591785 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    591786 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    591787 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    591788 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    591789 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    591790 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    591791 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    591792 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    591793 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    591794 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    591795 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    591796 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    591797 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    591798 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    591799 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    591800 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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