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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    588601 8wh5:D (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    588602 8wh5:E (3.58) BS01 dna ? GO:0000786 ... P59226 38413824
    588603 8wh5:F (3.58) BS01 dna ? GO:0000325 ... P59259 38413824
    588604 8wh5:F (3.58) BS02 dna ? GO:0000325 ... P59259 38413824
    588605 8wh5:G (3.58) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588606 8wh5:G (3.58) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588607 8wh5:H (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    588608 8wh5:K (3.58) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588609 8wh5:K (3.58) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588610 8wh8:A (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    588611 8wh8:A (3.6) BS02 dna ? GO:0000786 ... P59226 38413824
    588612 8wh8:B (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    588613 8wh8:B (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    588614 8wh8:C (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588615 8wh8:C (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588616 8wh8:D (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    588617 8wh8:D (3.6) BS02 dna ? GO:0000786 ... O23629 38413824
    588618 8wh8:E (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    588619 8wh8:F (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    588620 8wh8:F (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    588621 8wh8:G (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588622 8wh8:G (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588623 8wh8:H (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    588624 8wh8:K (3.6) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588625 8wh8:K (3.6) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588626 8wh8:K (3.6) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588627 8wh9:A (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    588628 8wh9:A (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    588629 8wh9:B (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    588630 8wh9:B (3.31) BS02 dna ? GO:0000325 ... P59259 38413824
    588631 8wh9:C (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588632 8wh9:C (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588633 8wh9:D (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    588634 8wh9:D (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    588635 8wh9:E (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    588636 8wh9:E (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    588637 8wh9:F (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    588638 8wh9:G (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588639 8wh9:G (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588640 8wh9:H (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    588641 8wh9:H (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    588642 8wh9:K (3.31) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588643 8wh9:K (3.31) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588644 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588645 8wha:A (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    588646 8wha:A (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    588647 8wha:B (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    588648 8wha:B (4.05) BS02 dna ? GO:0000325 ... P59259 38413824
    588649 8wha:C (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588650 8wha:C (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588651 8wha:D (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    588652 8wha:D (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    588653 8wha:E (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    588654 8wha:E (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    588655 8wha:F (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    588656 8wha:G (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588657 8wha:G (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588658 8wha:H (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    588659 8wha:H (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    588660 8wha:K (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588661 8wha:K (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588662 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588663 8wha:L (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588664 8wha:L (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588665 8wha:L (4.05) BS03 BEF 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588666 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    588667 8whb:A (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    588668 8whb:A (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    588669 8whb:B (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    588670 8whb:C (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588671 8whb:C (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588672 8whb:D (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    588673 8whb:D (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    588674 8whb:E (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    588675 8whb:E (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    588676 8whb:F (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    588677 8whb:F (3.17) BS02 dna ? GO:0000325 ... P59259 38413824
    588678 8whb:G (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    588679 8whb:G (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    588680 8whb:H (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    588681 8whb:H (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    588682 8whx:1 (2.8) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588683 8whx:2 (2.8) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588684 8whx:3 (2.8) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588685 8whx:3 (2.8) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    588686 8whx:4 (2.8) BS01 rna ? GO:0003735 ... A0R215 38245551
    588687 8whx:5 (2.8) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588688 8whx:6 (2.8) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588689 8whx:7 (2.8) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588690 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588691 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588692 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588693 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588694 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588695 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588696 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588697 8whx:J (2.8) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    588698 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588699 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588700 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    588701 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588702 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588703 8whx:R (2.8) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588704 8whx:R (2.8) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588705 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588706 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    588707 8whx:T (2.8) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588708 8whx:U (2.8) BS01 rna ? GO:0003723 ... A0R151 38245551
    588709 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588710 8whx:W (2.8) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588711 8whx:X (2.8) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588712 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    588713 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    588714 8whx:d (2.8) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588715 8whx:e (2.8) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    588716 8whx:f (2.8) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    588717 8whx:g (2.8) BS01 rna ? GO:0003735 ... N/A 38245551
    588718 8whx:g (2.8) BS02 rna ? GO:0003735 ... N/A 38245551
    588719 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    588720 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    588721 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    588722 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    588723 8whx:l (2.8) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    588724 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    588725 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    588726 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    588727 8whx:p (2.8) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    588728 8whx:p (2.8) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    588729 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    588730 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    588731 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    588732 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    588733 8whx:u (2.8) BS01 rna ? GO:0003723 ... A0R102 38245551
    588734 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    588735 8why:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588736 8why:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588737 8why:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588738 8why:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    588739 8why:4 (2.7) BS01 rna ? GO:0003735 ... A0R215 38245551
    588740 8why:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588741 8why:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588742 8why:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588743 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588744 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588745 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588746 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588747 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588748 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588749 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588750 8why:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    588751 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588752 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588753 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588754 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588755 8why:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588756 8why:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588757 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588758 8why:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588759 8why:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    588760 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588761 8why:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588762 8why:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588763 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    588764 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    588765 8wi0:A (2.93) BS01 peptide N/A GO:0005524 ... O15440 38844452
    588766 8wi2:A (4.06) BS01 peptide N/A GO:0005524 ... O15440 38844452
    588767 8wi5:A (3.46) BS01 peptide N/A GO:0005524 ... O15440 38844452
    588768 8wi7:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    588769 8wi7:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    588770 8wi7:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    588771 8wi7:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    588772 8wi7:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    588773 8wi7:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    588774 8wi7:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    588775 8wi7:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    588776 8wi7:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    588777 8wi7:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    588778 8wi7:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    588779 8wi7:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    588780 8wi7:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    588781 8wi7:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    588782 8wi7:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    588783 8wi7:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    588784 8wi7:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    588785 8wi7:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    588786 8wi7:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    588787 8wi7:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    588788 8wi7:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    588789 8wi7:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    588790 8wi7:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    588791 8wi7:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    588792 8wi7:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    588793 8wi7:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    588794 8wi7:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    588795 8wi7:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    588796 8wi7:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    588797 8wi7:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    588798 8wi7:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    588799 8wi7:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    588800 8wi7:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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