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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56401 2jd8:1 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56402 2jd8:1 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56403 2jd8:2 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56404 2jd8:2 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56405 2jd8:2 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56406 2jd8:3 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56407 2jd8:3 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56408 2jd8:3 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56409 2jd8:4 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56410 2jd8:4 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56411 2jd8:4 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56412 2jd8:5 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56413 2jd8:5 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56414 2jd8:5 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56415 2jd8:6 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56416 2jd8:6 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56417 2jd8:6 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56418 2jd8:7 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56419 2jd8:7 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56420 2jd8:7 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56421 2jd8:8 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56422 2jd8:8 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56423 2jd8:8 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56424 2jd8:9 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56425 2jd8:9 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56426 2jd8:9 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56427 2jd8:A (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56428 2jd8:A (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56429 2jd8:A (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56430 2jd8:B (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56431 2jd8:B (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56432 2jd8:B (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56433 2jd8:C (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56434 2jd8:C (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56435 2jd8:C (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56436 2jd8:D (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56437 2jd8:D (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56438 2jd8:D (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56439 2jd8:E (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56440 2jd8:E (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56441 2jd8:E (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56442 2jd8:F (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56443 2jd8:F (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56444 2jd8:F (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56445 2jd8:G (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56446 2jd8:G (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56447 2jd8:G (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56448 2jd8:H (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56449 2jd8:H (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56450 2jd8:H (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56451 2jd8:I (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56452 2jd8:I (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56453 2jd8:I (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56454 2jd8:J (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56455 2jd8:J (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56456 2jd8:J (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56457 2jd8:K (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56458 2jd8:K (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56459 2jd8:K (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56460 2jd8:L (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56461 2jd8:L (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56462 2jd8:L (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56463 2jd8:M (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56464 2jd8:M (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56465 2jd8:M (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56466 2jd8:N (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56467 2jd8:N (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56468 2jd8:N (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56469 2jd8:O (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56470 2jd8:O (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56471 2jd8:O (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56472 2jd8:P (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56473 2jd8:P (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56474 2jd8:P (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56475 2jd8:Q (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56476 2jd8:Q (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56477 2jd8:Q (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56478 2jd8:R (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56479 2jd8:R (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56480 2jd8:R (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56481 2jd8:S (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56482 2jd8:S (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56483 2jd8:S (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56484 2jd8:T (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56485 2jd8:T (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56486 2jd8:T (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56487 2jd8:U (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56488 2jd8:U (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56489 2jd8:U (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56490 2jd8:V (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56491 2jd8:V (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56492 2jd8:V (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56493 2jd8:W (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56494 2jd8:W (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56495 2jd8:W (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56496 2jd8:X (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56497 2jd8:X (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56498 2jd8:X (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56499 2jd8:Y (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56500 2jd8:Y (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56501 2jd8:Y (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56502 2jd8:Z (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56503 2jd8:Z (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    56504 2jd8:Z (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    56505 2jdi:A (1.9) BS01 ANP 3.6.3.14 GO:0005515 ... P19483 17350959
    56506 2jdi:B (1.9) BS01 ANP 3.6.3.14 GO:0005515 ... P19483 17350959
    56507 2jdi:C (1.9) BS01 ANP 3.6.3.14 GO:0005515 ... P19483 17350959
    56508 2jdi:C (1.9) BS02 ANP 3.6.3.14 GO:0005515 ... P19483 17350959
    56509 2jdi:D (1.9) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 17350959
    56510 2jdi:F (1.9) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 17350959
    56511 2jdi:G (1.9) BS01 peptide 3.6.1.34 GO:0005515 ... P05631 17350959
    56512 2jdi:H (1.9) BS01 peptide 3.6.1.34 GO:0015986 ... P05630 17350959
    56513 2jds:A (2.0) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 17275837
    56514 2jds:A (2.0) BS02 L20 2.7.11.11 GO:0001669 ... P00517 17275837 MOAD: Ki=6.3nM
    PDBbind: -logKd/Ki=8.20, Ki=6.3nM
    BindingDB: IC50=6nM
    56515 2jdt:A (2.15) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 17275837
    56516 2jdt:A (2.15) BS02 I5S 2.7.11.11 GO:0001669 ... P00517 17275837 PDBbind: -logKd/Ki=6.77, IC50=0.17uM
    BindingDB: IC50=170nM
    56517 2jdv:A (2.08) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 17275837
    56518 2jdv:A (2.08) BS02 L20 2.7.11.11 GO:0001669 ... P00517 17275837 PDBbind: -logKd/Ki=8.20, Ki=6.3nM
    BindingDB: IC50=6nM
    56519 2jdz:A (2.1) BS01 MN ? GO:0005537 ... P81637 17937659
    56520 2jdz:A (2.1) BS02 CA ? GO:0005537 ... P81637 17937659
    56521 2jdz:A (2.1) BS03 MN ? GO:0005537 ... P81637 17937659
    56522 2jdz:A (2.1) BS04 XMM ? GO:0005537 ... P81637 17937659
    56523 2je7:A (1.65) BS01 MN ? GO:0005537 ... P81637 17937659
    56524 2je7:A (1.65) BS02 CA ? GO:0005537 ... P81637 17937659
    56525 2je7:A (1.65) BS03 XMM ? GO:0005537 ... P81637 17937659
    56526 2je9:A (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    56527 2je9:A (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    56528 2je9:A (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    56529 2je9:B (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    56530 2je9:B (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    56531 2je9:B (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    56532 2je9:C (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    56533 2je9:C (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    56534 2je9:C (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    56535 2je9:D (2.1) BS01 CA ? GO:0005537 ... P08902 17937659
    56536 2je9:D (2.1) BS02 MN ? GO:0005537 ... P08902 17937659
    56537 2je9:D (2.1) BS03 XMM ? GO:0005537 ... P08902 17937659
    56538 2jea:A (2.33) BS01 rna 3.1.13.- GO:0000177 ... Q9UXC0 17380186
    56539 2jea:B (2.33) BS01 rna 3.1.13.- GO:0000175 ... Q9UXC2 17380186
    56540 2jec:A (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    56541 2jec:A (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    56542 2jec:A (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    56543 2jec:B (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    56544 2jec:B (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    56545 2jec:B (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    56546 2jec:C (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    56547 2jec:C (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    56548 2jec:C (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    56549 2jec:C (2.0) BS04 MN ? GO:0005537 ... P08902 17937659
    56550 2jec:D (2.0) BS01 CA ? GO:0005537 ... P08902 17937659
    56551 2jec:D (2.0) BS02 MN ? GO:0005537 ... P08902 17937659
    56552 2jec:D (2.0) BS03 XMM ? GO:0005537 ... P08902 17937659
    56553 2jef:A (2.17) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56554 2jef:A (2.17) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56555 2jef:A (2.17) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56556 2jef:A (2.17) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56557 2jef:A (2.17) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56558 2jef:A (2.17) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56559 2jeg:A (2.38) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56560 2jeg:A (2.38) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56561 2jeg:A (2.38) BS03 DGT 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56562 2jeg:A (2.38) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56563 2jeg:A (2.38) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56564 2jeg:A (2.38) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56565 2jei:A (2.39) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56566 2jei:A (2.39) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56567 2jei:A (2.39) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56568 2jei:A (2.39) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56569 2jei:A (2.39) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56570 2jei:A (2.39) BS06 DGT 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56571 2jej:A (1.86) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56572 2jej:A (1.86) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56573 2jej:A (1.86) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56574 2jej:A (1.86) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56575 2jej:A (1.86) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56576 2jej:A (1.86) BS06 DGT 2.7.7.7 GO:0000287 ... Q97W02 17337730
    56577 2jes:A (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56578 2jes:C (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56579 2jes:E (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56580 2jes:G (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56581 2jes:I (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56582 2jes:K (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56583 2jes:M (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56584 2jes:O (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56585 2jes:Q (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56586 2jes:S (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56587 2jes:U (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56588 2jes:W (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56589 2jes:Y (3.4) BS01 CA ? GO:0019028 ... P54309 17363899
    56590 2jev:A (2.3) BS01 NHQ 2.3.1.57 GO:0001525 ... P21673 17516632 MOAD: Ki=6nM
    56591 2jev:A (2.3) BS02 NHQ 2.3.1.57 GO:0001525 ... P21673 17516632 MOAD: Ki=6nM
    56592 2jev:B (2.3) BS01 NHQ 2.3.1.57 GO:0001525 ... P21673 17516632 MOAD: Ki=6nM
    56593 2jev:B (2.3) BS02 NHQ 2.3.1.57 GO:0001525 ... P21673 17516632 MOAD: Ki=6nM
    56594 2jey:A (2.7) BS01 HLO 3.1.1.7 GO:0001919 ... P21836 17443135
    56595 2jey:B (2.7) BS01 HLO 3.1.1.7 GO:0001919 ... P21836 17443135
    56596 2jez:A (2.6) BS01 HLO 3.1.1.7 GO:0001919 ... P21836 17443135
    56597 2jez:B (2.6) BS01 HLO 3.1.1.7 GO:0001919 ... P21836 17443135
    56598 2jez:B (2.6) BS02 HLO 3.1.1.7 GO:0001919 ... P21836 17443135
    56599 2jf0:A (2.5) BS01 HBP 3.1.1.7 GO:0001919 ... P21836 17443135
    56600 2jf0:B (2.5) BS01 HBP 3.1.1.7 GO:0001919 ... P21836 17443135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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