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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    202601 5da5:E (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202602 5da5:E (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202603 5da5:E (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202604 5da5:F (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202605 5da5:F (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202606 5da5:F (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202607 5da5:G (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202608 5da5:G (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202609 5da5:G (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202610 5da5:H (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202611 5da5:H (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202612 5da5:H (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202613 5da5:I (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202614 5da5:I (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202615 5da5:J (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202616 5da5:J (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202617 5da5:J (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202618 5da5:K (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202619 5da5:K (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202620 5da5:K (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202621 5da5:L (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202622 5da5:L (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202623 5da5:L (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202624 5da5:L (2.064) BS04 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202625 5da5:M (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202626 5da5:M (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202627 5da5:M (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202628 5da5:M (2.064) BS04 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202629 5da5:N (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202630 5da5:N (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202631 5da5:N (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202632 5da5:O (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202633 5da5:O (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202634 5da5:O (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202635 5da5:P (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202636 5da5:P (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202637 5da5:P (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202638 5da5:Q (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202639 5da5:Q (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202640 5da5:Q (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202641 5da5:R (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202642 5da5:R (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202643 5da5:R (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202644 5da5:S (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202645 5da5:S (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202646 5da5:S (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202647 5da5:T (2.064) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202648 5da5:T (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202649 5da5:T (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202650 5da5:U (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202651 5da5:U (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202652 5da5:U (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202653 5da5:V (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202654 5da5:V (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202655 5da5:V (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202656 5da5:W (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202657 5da5:W (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202658 5da5:W (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202659 5da5:X (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202660 5da5:X (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202661 5da5:X (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202662 5da5:Y (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202663 5da5:Y (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202664 5da5:Y (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202665 5da5:Z (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202666 5da5:Z (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202667 5da5:Z (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202668 5da5:a (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202669 5da5:a (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202670 5da5:a (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202671 5da5:b (2.064) BS01 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202672 5da5:b (2.064) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202673 5da5:b (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202674 5da5:c (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202675 5da5:c (2.064) BS02 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202676 5da5:c (2.064) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202677 5da5:d (2.064) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202678 5da5:d (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202679 5da5:d (2.064) BS03 GOA 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    202680 5da8:M (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    202681 5da8:Q (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    202682 5da8:V (3.0) BS01 MG 5.6.1.7 GO:0005524 ... Q8KF02 N/A
    202683 5dab:A (2.1) BS01 FE2 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 N/A
    202684 5dab:A (2.1) BS02 AKG 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 N/A
    202685 5dab:A (2.1) BS03 58W 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 N/A BindingDB: Kd=13000nM, IC50=4950nM
    202686 5dal:A (1.5) BS01 5AU 2.5.1.18 GO:0000302 ... P09211 N/A
    202687 5dal:A (1.5) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    202688 5dal:B (1.5) BS01 5AU 2.5.1.18 GO:0000302 ... P09211 N/A
    202689 5dal:B (1.5) BS02 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    202690 5dar:C (2.9) BS01 rna ? GO:0003735 ... P54030 N/A
    202691 5dar:F (2.9) BS01 rna ? GO:0003735 ... P54030 N/A
    202692 5dat:C0 (3.15) BS01 rna ? GO:0000054 ... Q08745 N/A
    202693 5dat:C1 (3.15) BS01 rna ? GO:0000028 ... P0CX47 N/A
    202694 5dat:C2 (3.15) BS01 rna ? GO:0003735 ... P48589 N/A
    202695 5dat:C3 (3.15) BS01 rna ? GO:0000462 ... P05756 N/A
    202696 5dat:C3 (3.15) BS02 rna ? GO:0000462 ... P05756 N/A
    202697 5dat:C3 (3.15) BS03 OHX ? GO:0000462 ... P05756 N/A
    202698 5dat:C4 (3.15) BS01 rna ? GO:0000028 ... P06367 N/A
    202699 5dat:C5 (3.15) BS01 rna ? GO:0000028 ... Q01855 N/A
    202700 5dat:C5 (3.15) BS02 OHX ? GO:0000028 ... Q01855 N/A
    202701 5dat:C6 (3.15) BS01 rna ? GO:0000462 ... P0CX51 N/A
    202702 5dat:C7 (3.15) BS01 rna ? GO:0000028 ... P02407 N/A
    202703 5dat:C8 (3.15) BS01 rna ? GO:0000054 ... P0CX55 N/A
    202704 5dat:C8 (3.15) BS02 MG ? GO:0000054 ... P0CX55 N/A
    202705 5dat:C9 (3.15) BS01 rna ? GO:0000028 ... P07280 N/A
    202706 5dat:D0 (3.15) BS01 rna ? GO:0000462 ... P38701 N/A
    202707 5dat:D2 (3.15) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    202708 5dat:D3 (3.15) BS01 rna ? GO:0000462 ... P0CX29 N/A
    202709 5dat:D4 (3.15) BS01 rna ? GO:0000462 ... P0CX31 N/A
    202710 5dat:D5 (3.15) BS01 rna ? GO:0002181 ... Q3E792 N/A
    202711 5dat:D6 (3.15) BS01 rna ? GO:0003735 ... P39939 N/A
    202712 5dat:D6 (3.15) BS02 ZN ? GO:0003735 ... P39939 N/A
    202713 5dat:D7 (3.15) BS01 rna ? GO:0000028 ... P35997 N/A
    202714 5dat:D8 (3.15) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    202715 5dat:D9 (3.15) BS01 rna ? GO:0002181 ... P41057 N/A
    202716 5dat:D9 (3.15) BS02 MG ? GO:0002181 ... P41057 N/A
    202717 5dat:D9 (3.15) BS03 ZN ? GO:0002181 ... P41057 N/A
    202718 5dat:D9 (3.15) BS04 MG ? GO:0002181 ... P41057 N/A
    202719 5dat:D9 (3.15) BS05 OHX ? GO:0002181 ... P41057 N/A
    202720 5dat:E0 (3.15) BS01 rna ? GO:0002181 ... P0CX33 N/A
    202721 5dat:E1 (3.15) BS01 rna ? GO:0003735 ... P05759 N/A
    202722 5dat:E1 (3.15) BS02 ZN ? GO:0003735 ... P05759 N/A
    202723 5dat:L2 (3.15) BS01 rna ? GO:0002181 ... P0CX45 N/A
    202724 5dat:L2 (3.15) BS02 rna ? GO:0002181 ... P0CX45 N/A
    202725 5dat:L2 (3.15) BS03 MG ? GO:0002181 ... P0CX45 N/A
    202726 5dat:L3 (3.15) BS01 rna ? GO:0000027 ... P14126 N/A
    202727 5dat:L3 (3.15) BS02 OHX ? GO:0000027 ... P14126 N/A
    202728 5dat:L4 (3.15) BS01 rna ? GO:0002181 ... P10664 N/A
    202729 5dat:L4 (3.15) BS02 rna ? GO:0002181 ... P10664 N/A
    202730 5dat:L4 (3.15) BS03 OHX ? GO:0002181 ... P10664 N/A
    202731 5dat:L5 (3.15) BS01 rna ? GO:0000027 ... P26321 N/A
    202732 5dat:L5 (3.15) BS02 rna ? GO:0000027 ... P26321 N/A
    202733 5dat:L5 (3.15) BS03 OHX ? GO:0000027 ... P26321 N/A
    202734 5dat:L6 (3.15) BS01 rna ? GO:0000027 ... Q02326 N/A
    202735 5dat:L7 (3.15) BS01 rna ? GO:0000463 ... P05737 N/A
    202736 5dat:L7 (3.15) BS02 rna ? GO:0000463 ... P05737 N/A
    202737 5dat:L7 (3.15) BS03 MG ? GO:0000463 ... P05737 N/A
    202738 5dat:L8 (3.15) BS01 rna ? GO:0000470 ... P17076 N/A
    202739 5dat:L8 (3.15) BS02 rna ? GO:0000470 ... P17076 N/A
    202740 5dat:L9 (3.15) BS01 rna ? GO:0002181 ... P05738 N/A
    202741 5dat:M0 (3.15) BS01 rna ? GO:0000027 ... P41805 N/A
    202742 5dat:M0 (3.15) BS02 rna ? GO:0000027 ... P41805 N/A
    202743 5dat:M0 (3.15) BS03 OHX ? GO:0000027 ... P41805 N/A
    202744 5dat:M1 (3.15) BS01 rna ? GO:0000027 ... Q3E757 N/A
    202745 5dat:M1 (3.15) BS02 rna ? GO:0000027 ... Q3E757 N/A
    202746 5dat:M3 (3.15) BS01 rna ? GO:0002181 ... Q12690 N/A
    202747 5dat:M3 (3.15) BS02 rna ? GO:0002181 ... Q12690 N/A
    202748 5dat:M4 (3.15) BS01 rna ? GO:0000027 ... P36105 N/A
    202749 5dat:M5 (3.15) BS01 rna ? GO:0003735 ... P05748 N/A
    202750 5dat:M5 (3.15) BS02 rna ? GO:0003735 ... P05748 N/A
    202751 5dat:M5 (3.15) BS03 OHX ? GO:0003735 ... P05748 N/A
    202752 5dat:M6 (3.15) BS01 rna ? GO:0000470 ... P26784 N/A
    202753 5dat:M6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    202754 5dat:M7 (3.15) BS01 rna ? GO:0000448 ... P05740 N/A
    202755 5dat:M7 (3.15) BS02 rna ? GO:0000448 ... P05740 N/A
    202756 5dat:M7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    202757 5dat:M7 (3.15) BS04 MG ? GO:0000448 ... P05740 N/A
    202758 5dat:M7 (3.15) BS05 OHX ? GO:0000448 ... P05740 N/A
    202759 5dat:M8 (3.15) BS01 rna ? GO:0002181 ... P0CX49 N/A
    202760 5dat:M9 (3.15) BS01 rna ? GO:0002181 ... P0CX82 N/A
    202761 5dat:M9 (3.15) BS02 rna ? GO:0002181 ... P0CX82 N/A
    202762 5dat:M9 (3.15) BS03 MG ? GO:0002181 ... P0CX82 N/A
    202763 5dat:M9 (3.15) BS04 OHX ? GO:0002181 ... P0CX82 N/A
    202764 5dat:N0 (3.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    202765 5dat:N0 (3.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    202766 5dat:N1 (3.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    202767 5dat:N1 (3.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    202768 5dat:N1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    202769 5dat:N1 (3.15) BS04 OHX ? GO:0002181 ... Q02753 N/A
    202770 5dat:N2 (3.15) BS01 rna ? GO:0002181 ... P05749 N/A
    202771 5dat:N3 (3.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    202772 5dat:N3 (3.15) BS02 rna ? GO:0002181 ... P0CX41 N/A
    202773 5dat:N4 (3.15) BS01 rna ? GO:0002181 ... P04449 N/A
    202774 5dat:N4 (3.15) BS02 rna ? GO:0002181 ... P04449 N/A
    202775 5dat:N5 (3.15) BS01 rna ? GO:0000027 ... P04456 N/A
    202776 5dat:N5 (3.15) BS02 rna ? GO:0000027 ... P04456 N/A
    202777 5dat:N5 (3.15) BS03 MG ? GO:0000027 ... P04456 N/A
    202778 5dat:N6 (3.15) BS01 rna ? GO:0002181 ... P05743 N/A
    202779 5dat:N6 (3.15) BS02 rna ? GO:0002181 ... P05743 N/A
    202780 5dat:N6 (3.15) BS03 MG ? GO:0002181 ... P05743 N/A
    202781 5dat:N7 (3.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    202782 5dat:N8 (3.15) BS01 rna ? GO:0002181 ... P02406 N/A
    202783 5dat:N8 (3.15) BS02 MG ? GO:0002181 ... P02406 N/A
    202784 5dat:N8 (3.15) BS03 MG ? GO:0002181 ... P02406 N/A
    202785 5dat:N9 (3.15) BS01 rna ? GO:0002181 ... P05747 N/A
    202786 5dat:N9 (3.15) BS02 OHX ? GO:0002181 ... P05747 N/A
    202787 5dat:O0 (3.15) BS01 rna ? GO:0002181 ... P14120 N/A
    202788 5dat:O1 (3.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    202789 5dat:O1 (3.15) BS02 OHX ? GO:0002181 ... P0C2H8 N/A
    202790 5dat:O2 (3.15) BS01 rna ? GO:0002181 ... P38061 N/A
    202791 5dat:O2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    202792 5dat:O3 (3.15) BS01 rna ? GO:0000027 ... P05744 N/A
    202793 5dat:O3 (3.15) BS02 OHX ? GO:0000027 ... P05744 N/A
    202794 5dat:O4 (3.15) BS01 rna ? GO:0002181 ... P87262 N/A
    202795 5dat:O4 (3.15) BS02 MG ? GO:0002181 ... P87262 N/A
    202796 5dat:O5 (3.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    202797 5dat:O5 (3.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    202798 5dat:O5 (3.15) BS03 MG ? GO:0000463 ... P0CX84 N/A
    202799 5dat:O6 (3.15) BS01 rna ? GO:0002181 ... P05745 N/A
    202800 5dat:O7 (3.15) BS01 rna ? GO:0000448 ... P49166 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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