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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    200801 5cpi:G (2.902) BS01 dna ? GO:0000786 ... P04908 26446621
    200802 5cpi:G (2.902) BS02 dna ? GO:0000786 ... P04908 26446621
    200803 5cpi:H (2.902) BS01 dna ? GO:0000786 ... P06899 26446621
    200804 5cpi:H (2.902) BS02 dna ? GO:0000786 ... P06899 26446621
    200805 5cpj:A (3.15) BS01 dna ? GO:0000786 ... P68431 26446621
    200806 5cpj:A (3.15) BS02 dna ? GO:0000786 ... P68431 26446621
    200807 5cpj:B (3.15) BS01 dna ? GO:0000781 ... P62805 26446621
    200808 5cpj:B (3.15) BS02 dna ? GO:0000781 ... P62805 26446621
    200809 5cpj:C (3.15) BS01 dna ? GO:0000786 ... P04908 26446621
    200810 5cpj:C (3.15) BS02 dna ? GO:0000786 ... P04908 26446621
    200811 5cpj:D (3.15) BS01 dna ? GO:0000786 ... P06899 26446621
    200812 5cpj:D (3.15) BS02 dna ? GO:0000786 ... P06899 26446621
    200813 5cpj:E (3.15) BS01 dna ? GO:0000786 ... P68431 26446621
    200814 5cpj:E (3.15) BS02 dna ? GO:0000786 ... P68431 26446621
    200815 5cpj:F (3.15) BS01 dna ? GO:0000781 ... P62805 26446621
    200816 5cpj:F (3.15) BS02 dna ? GO:0000781 ... P62805 26446621
    200817 5cpj:G (3.15) BS01 dna ? GO:0000786 ... P04908 26446621
    200818 5cpj:G (3.15) BS02 dna ? GO:0000786 ... P04908 26446621
    200819 5cpj:H (3.15) BS01 dna ? GO:0000786 ... P06899 26446621
    200820 5cpj:H (3.15) BS02 dna ? GO:0000786 ... P06899 26446621
    200821 5cpk:A (2.632) BS01 dna ? GO:0000786 ... P68431 26446621
    200822 5cpk:A (2.632) BS02 dna ? GO:0000786 ... P68431 26446621
    200823 5cpk:B (2.632) BS01 dna ? GO:0000781 ... P62805 26446621
    200824 5cpk:B (2.632) BS02 dna ? GO:0000781 ... P62805 26446621
    200825 5cpk:C (2.632) BS01 dna ? GO:0000786 ... P04908 26446621
    200826 5cpk:C (2.632) BS02 dna ? GO:0000786 ... P04908 26446621
    200827 5cpk:D (2.632) BS01 dna ? GO:0000786 ... P06899 26446621
    200828 5cpk:D (2.632) BS02 dna ? GO:0000786 ... P06899 26446621
    200829 5cpk:E (2.632) BS01 dna ? GO:0000786 ... P68431 26446621
    200830 5cpk:E (2.632) BS02 dna ? GO:0000786 ... P68431 26446621
    200831 5cpk:F (2.632) BS01 dna ? GO:0000781 ... P62805 26446621
    200832 5cpk:F (2.632) BS02 dna ? GO:0000781 ... P62805 26446621
    200833 5cpk:G (2.632) BS01 dna ? GO:0000786 ... P04908 26446621
    200834 5cpk:G (2.632) BS02 dna ? GO:0000786 ... P04908 26446621
    200835 5cpk:H (2.632) BS01 dna ? GO:0000786 ... P06899 26446621
    200836 5cpk:H (2.632) BS02 dna ? GO:0000786 ... P06899 26446621
    200837 5cpp:A (2.08) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2713354
    200838 5cpp:A (2.08) BS02 ADO 1.14.15.1 GO:0004497 ... P00183 2713354
    200839 5cps:A (1.8) BS01 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200840 5cps:A (1.8) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200841 5cps:A (1.8) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200842 5cps:A (1.8) BS04 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200843 5cps:A (1.8) BS05 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200844 5cps:B (1.8) BS01 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200845 5cps:B (1.8) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200846 5cps:B (1.8) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200847 5cps:B (1.8) BS04 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200848 5cps:B (1.8) BS05 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200849 5cpt:A (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200850 5cpt:A (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200851 5cpt:B (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200852 5cpt:B (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200853 5cpv:A (1.6) BS01 CA ? GO:0005509 ... P02618 2777802
    200854 5cpv:A (1.6) BS02 CA ? GO:0005509 ... P02618 2777802
    200855 5cpw:A (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    200856 5cpw:A (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    200857 5cpw:A (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    200858 5cpw:B (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    200859 5cpw:B (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    200860 5cpw:B (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    200861 5cpw:C (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    200862 5cpw:C (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    200863 5cpw:C (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    200864 5cpw:D (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    200865 5cpw:D (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    200866 5cpw:D (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    200867 5cpw:E (1.75) BS01 GAL ? GO:0005198 ... P49302 26474293
    200868 5cpw:E (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    200869 5cpw:E (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    200870 5cpx:A (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    200871 5cpx:A (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    200872 5cpx:B (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    200873 5cpx:B (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    200874 5cpx:C (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    200875 5cpx:C (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    200876 5cpx:D (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    200877 5cpx:D (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    200878 5cpx:E (1.87) BS01 GAL ? GO:0005198 ... P49302 26474293
    200879 5cpx:E (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    200880 5cpy:A (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    200881 5cpy:A (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    200882 5cpy:B (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    200883 5cpy:B (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    200884 5cpy:C (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    200885 5cpy:C (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    200886 5cpy:D (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    200887 5cpy:D (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    200888 5cpy:E (1.93) BS01 GAL ? GO:0005198 ... P49302 26474293
    200889 5cpy:E (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    200890 5cpz:A (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    200891 5cpz:A (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    200892 5cpz:A (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    200893 5cpz:B (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    200894 5cpz:B (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    200895 5cpz:B (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    200896 5cpz:C (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    200897 5cpz:C (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    200898 5cpz:C (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    200899 5cpz:D (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    200900 5cpz:D (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    200901 5cpz:D (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    200902 5cpz:E (1.71) BS01 GAL ? GO:0005198 ... P49302 26474293
    200903 5cpz:E (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    200904 5cpz:E (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    200905 5cq0:A (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    200906 5cq0:A (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    200907 5cq0:B (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    200908 5cq0:B (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    200909 5cq0:C (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    200910 5cq0:C (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    200911 5cq0:D (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    200912 5cq0:D (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    200913 5cq0:E (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    200914 5cq0:E (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    200915 5cq1:A (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200916 5cq1:A (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200917 5cq1:B (2.3) BS01 BGC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200918 5cq1:B (2.3) BS02 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200919 5cq1:B (2.3) BS03 GLC 2.4.1.25 GO:0000025 ... Q9LV91 26504082
    200920 5cq9:B (3.0) BS01 peptide ? GO:0005576 ... Q8ZQC8 26299973
    200921 5cqg:A (2.3) BS01 55C 2.7.7.49 GO:0000781 ... Q0QHL8 26365799
    200922 5cqg:B (2.3) BS01 55C 2.7.7.49 GO:0000781 ... Q0QHL8 26365799
    200923 5cqj:A (2.15) BS01 53Q 2.5.1.31 GO:0000287 ... P60472 26283394 MOAD: ic50=15.4uM
    PDBbind: -logKd/Ki=4.81, IC50=15.4uM
    200924 5cqx:A (1.63) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    200925 5cqx:B (1.63) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    200926 5cqy:A (2.481) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    200927 5cqy:B (2.481) BS01 peptide 3.1.27.- GO:0003677 ... P0AE70 27026704
    200928 5cqz:A (2.9) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200929 5cqz:A (2.9) BS02 53O 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200930 5cqz:A (2.9) BS03 53O 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200931 5cqz:B (2.9) BS01 53O 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200932 5cqz:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200933 5cqz:B (2.9) BS03 53O 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200934 5cr1:A (1.545) BS01 T44 ? GO:0005179 ... P02766 26468275 BindingDB: IC50=10500nM
    200935 5cr1:B (1.545) BS01 STL ? GO:0005179 ... P02766 26468275 BindingDB: Kd=470nM
    200936 5cr2:A (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704 PDBbind: Kd=0.52uM
    200937 5cr2:B (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704 PDBbind: Kd=0.52uM
    200938 5cr2:C (2.9) BS01 dna 3.1.27.- GO:0003677 ... P0AE70 27026704 PDBbind: Kd=0.52uM
    200939 5cr5:A (1.61) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 26288694
    200940 5cr5:A (1.61) BS02 EL1 2.6.1.42 GO:0003824 ... O15382 26288694 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    200941 5cr5:B (1.61) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 26288694
    200942 5cr5:B (1.61) BS02 EL1 2.6.1.42 GO:0003824 ... O15382 26288694 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    200943 5cr7:A (2.9) BS01 5WO 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519 PDBbind: -logKd/Ki=3.10, Ki=0.79mM
    200944 5cr7:A (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200945 5cr7:B (2.9) BS01 5WO 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200946 5cr7:B (2.9) BS02 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 26599519
    200947 5crd:A (2.08) BS01 CA ? GO:0005509 ... P31415 26416891
    200948 5crd:A (2.08) BS02 CA ? GO:0005509 ... P31415 26416891
    200949 5crd:A (2.08) BS03 CA ? GO:0005509 ... P31415 26416891
    200950 5cre:A (3.315) BS01 CA ? GO:0005509 ... P31415 26416891
    200951 5cre:A (3.315) BS02 CA ? GO:0005509 ... P31415 26416891
    200952 5crg:A (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    200953 5crg:A (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    200954 5crg:A (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    200955 5crg:A (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    200956 5crg:A (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    200957 5crg:A (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    200958 5crg:A (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    200959 5crg:A (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    200960 5crg:A (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    200961 5crg:A (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    200962 5crg:A (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    200963 5crg:A (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    200964 5crg:A (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    200965 5crg:B (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    200966 5crg:B (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    200967 5crg:B (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    200968 5crg:B (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    200969 5crg:B (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    200970 5crg:B (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    200971 5crg:B (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    200972 5crg:B (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    200973 5crg:B (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    200974 5crg:B (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    200975 5crg:B (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    200976 5crg:B (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    200977 5crg:B (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    200978 5crg:B (1.97) BS14 CA ? GO:0005509 ... P31415 26416891
    200979 5crg:C (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    200980 5crg:C (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    200981 5crg:C (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    200982 5crg:C (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    200983 5crg:C (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    200984 5crg:C (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    200985 5crg:C (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    200986 5crg:C (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    200987 5crg:C (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    200988 5crg:C (1.97) BS10 CA ? GO:0005509 ... P31415 26416891
    200989 5crg:C (1.97) BS11 CA ? GO:0005509 ... P31415 26416891
    200990 5crg:C (1.97) BS12 CA ? GO:0005509 ... P31415 26416891
    200991 5crg:C (1.97) BS13 CA ? GO:0005509 ... P31415 26416891
    200992 5crg:D (1.97) BS01 CA ? GO:0005509 ... P31415 26416891
    200993 5crg:D (1.97) BS02 CA ? GO:0005509 ... P31415 26416891
    200994 5crg:D (1.97) BS03 CA ? GO:0005509 ... P31415 26416891
    200995 5crg:D (1.97) BS04 CA ? GO:0005509 ... P31415 26416891
    200996 5crg:D (1.97) BS05 CA ? GO:0005509 ... P31415 26416891
    200997 5crg:D (1.97) BS06 CA ? GO:0005509 ... P31415 26416891
    200998 5crg:D (1.97) BS07 CA ? GO:0005509 ... P31415 26416891
    200999 5crg:D (1.97) BS08 CA ? GO:0005509 ... P31415 26416891
    201000 5crg:D (1.97) BS09 CA ? GO:0005509 ... P31415 26416891
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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