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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    200601 5cnb:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200602 5cnc:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200603 5cnd:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200604 5cne:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200605 5cnf:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200606 5cng:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26359336
    200607 5cni:A (2.69) BS01 GLU ? GO:0004930 ... Q14416 26313429
    200608 5cni:B (2.69) BS01 GLU ? GO:0004930 ... Q14416 26313429
    200609 5cnj:A (2.65) BS01 52Q ? GO:0004930 ... Q14416 26313429 PDBbind: -logKd/Ki=6.84, Ki=144nM
    200610 5cnj:B (2.65) BS01 52Q ? GO:0004930 ... Q14416 26313429
    200611 5cnk:A (3.15) BS01 GLU ? GO:0004930 ... Q14832 26313429
    200612 5cnm:A (2.84) BS01 52Q ? GO:0004930 ... Q14832 26313429 PDBbind: -logKd/Ki=6.81, Ki=156nM
    200613 5cnm:A (2.84) BS02 MG ? GO:0004930 ... Q14832 26313429
    200614 5cnp:B (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    200615 5cnp:D (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    200616 5cnp:F (2.38) BS01 MG 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    200617 5cns:A (2.975) BS01 CDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200618 5cns:A (2.975) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200619 5cns:A (2.975) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200620 5cns:A (2.975) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200621 5cns:B (2.975) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200622 5cns:B (2.975) BS02 CDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200623 5cns:B (2.975) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200624 5cns:B (2.975) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200625 5cns:C (2.975) BS01 CDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200626 5cns:C (2.975) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200627 5cns:C (2.975) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200628 5cns:C (2.975) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200629 5cns:D (2.975) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200630 5cns:D (2.975) BS02 CDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200631 5cns:D (2.975) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200632 5cns:D (2.975) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200633 5cns:E (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200634 5cns:F (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200635 5cns:G (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200636 5cns:H (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200637 5cnt:A (3.25) BS01 UDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200638 5cnt:A (3.25) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200639 5cnt:A (3.25) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200640 5cnt:A (3.25) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200641 5cnt:A (3.25) BS05 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200642 5cnt:B (3.25) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200643 5cnt:B (3.25) BS02 UDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200644 5cnt:B (3.25) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200645 5cnt:B (3.25) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200646 5cnt:B (3.25) BS05 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200647 5cnt:C (3.25) BS01 UDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200648 5cnt:C (3.25) BS02 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200649 5cnt:C (3.25) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200650 5cnt:C (3.25) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200651 5cnt:C (3.25) BS05 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200652 5cnt:D (3.25) BS01 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200653 5cnt:D (3.25) BS02 UDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200654 5cnt:D (3.25) BS03 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200655 5cnt:D (3.25) BS04 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200656 5cnt:D (3.25) BS05 DTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200657 5cnt:E (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200658 5cnt:F (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200659 5cnt:G (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200660 5cnt:H (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200661 5cnu:A (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200662 5cnu:A (3.4) BS02 ADP 1.17.4.1 GO:0004748 ... P00452 26754917
    200663 5cnu:A (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200664 5cnu:A (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200665 5cnu:B (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200666 5cnu:B (3.4) BS02 ADP 1.17.4.1 GO:0004748 ... P00452 26754917
    200667 5cnu:B (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200668 5cnu:B (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200669 5cnu:C (3.4) BS01 ADP 1.17.4.1 GO:0004748 ... P00452 26754917
    200670 5cnu:C (3.4) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200671 5cnu:C (3.4) BS03 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200672 5cnu:C (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200673 5cnu:D (3.4) BS01 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200674 5cnu:D (3.4) BS02 ADP 1.17.4.1 GO:0004748 ... P00452 26754917
    200675 5cnu:D (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200676 5cnu:D (3.4) BS04 DGT 1.17.4.1 GO:0004748 ... P00452 26754917
    200677 5cnu:E (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200678 5cnu:F (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200679 5cnu:G (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200680 5cnu:H (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200681 5cnv:A (3.2) BS01 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200682 5cnv:A (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200683 5cnv:A (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200684 5cnv:A (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200685 5cnv:A (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200686 5cnv:B (3.2) BS01 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200687 5cnv:B (3.2) BS02 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200688 5cnv:B (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200689 5cnv:B (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200690 5cnv:B (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200691 5cnv:C (3.2) BS01 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200692 5cnv:C (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200693 5cnv:C (3.2) BS03 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200694 5cnv:C (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200695 5cnv:C (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200696 5cnv:D (3.2) BS01 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200697 5cnv:D (3.2) BS02 GDP 1.17.4.1 GO:0004748 ... P00452 26754917
    200698 5cnv:D (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    200699 5cnv:D (3.2) BS04 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200700 5cnv:D (3.2) BS05 TTP 1.17.4.1 GO:0004748 ... P00452 26754917
    200701 5cnv:E (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200702 5cnv:F (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200703 5cnv:G (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200704 5cnv:H (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    200705 5cny:B (1.7) BS01 peptide ? GO:0005179 ... P01308 N/A
    200706 5cny:D (1.7) BS01 peptide ? GO:0005179 ... P01308 N/A
    200707 5co1:A (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    200708 5co1:A (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    200709 5co1:A (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    200710 5co1:A (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    200711 5co1:B (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    200712 5co1:B (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    200713 5co1:B (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    200714 5co1:B (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    200715 5co1:C (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    200716 5co1:C (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    200717 5co1:C (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    200718 5co1:C (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    200719 5co1:D (2.51) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    200720 5co1:D (2.51) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    200721 5co1:D (2.51) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    200722 5co1:D (2.51) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    200723 5co2:B (1.7) BS01 peptide ? GO:0005179 ... P01308 N/A
    200724 5co2:D (1.7) BS01 peptide ? GO:0005179 ... P01308 N/A
    200725 5co4:A (1.7) BS01 MTA 2.1.1.207 GO:0001510 ... Q72G96 N/A
    200726 5co4:B (1.7) BS01 MTA 2.1.1.207 GO:0001510 ... Q72G96 N/A
    200727 5co5:A (2.1) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    200728 5co5:A (2.1) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    200729 5co5:B (2.1) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    200730 5co5:B (2.1) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    200731 5co5:D (2.1) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    200732 5co5:D (2.1) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    200733 5co5:G (2.1) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    200734 5co5:G (2.1) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    200735 5co5:I (2.1) BS01 peptide ? GO:0004888 ... Q8WSF8 N/A
    200736 5co5:I (2.1) BS02 peptide ? GO:0004888 ... Q8WSF8 N/A
    200737 5co6:B (1.8) BS01 peptide ? GO:0005179 ... P01308 N/A
    200738 5co6:D (1.8) BS01 peptide ? GO:0005179 ... P01308 N/A
    200739 5co9:B (1.92) BS01 peptide ? GO:0005179 ... P01308 N/A
    200740 5co9:D (1.92) BS01 peptide ? GO:0005179 ... P01308 N/A
    200741 5cob:A (2.65) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200742 5cob:A (2.65) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200743 5cob:B (2.65) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200744 5cob:B (2.65) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200745 5cob:C (2.65) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200746 5cob:C (2.65) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200747 5cob:D (2.65) BS01 NAP 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200748 5cob:D (2.65) BS02 XOG 1.3.1.122 GO:0005737 ... K7WDL7 26868105
    200749 5coq:A (2.3) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200750 5coq:A (2.3) BS02 TCU 1.3.1.9 GO:0004318 ... P9WGR1 26147157 MOAD: Ki=427.5nM
    BindingDB: Ki=913nM, IC50=51nM
    200751 5coq:B (2.3) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200752 5coq:B (2.3) BS02 TCU 1.3.1.9 GO:0004318 ... P9WGR1 26147157 MOAD: Ki=427.5nM
    BindingDB: Ki=913nM, IC50=51nM
    200753 5coq:C (2.3) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200754 5coq:C (2.3) BS02 TCU 1.3.1.9 GO:0004318 ... P9WGR1 26147157 MOAD: Ki=427.5nM
    BindingDB: Ki=913nM, IC50=51nM
    200755 5coq:D (2.3) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200756 5coq:D (2.3) BS02 TCU 1.3.1.9 GO:0004318 ... P9WGR1 26147157 MOAD: Ki=427.5nM
    BindingDB: Ki=913nM, IC50=51nM
    200757 5cox:A (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    200758 5cox:B (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    200759 5cox:C (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    200760 5cox:D (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    200761 5coy:A (1.443) BS01 GLC ? GO:0002407 ... P13501 27091995
    200762 5coy:A (1.443) BS02 Z9N ? GO:0002407 ... P13501 27091995
    200763 5cp4:A (1.75) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 9649301
    200764 5cp4:A (1.75) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 9649301
    200765 5cp6:A (2.6) BS01 dna ? GO:0000786 ... P84233 27184539
    200766 5cp6:A (2.6) BS02 dna ? GO:0000786 ... P84233 27184539
    200767 5cp6:B (2.6) BS01 dna ? GO:0000786 ... P62799 27184539
    200768 5cp6:B (2.6) BS02 dna ? GO:0000786 ... P62799 27184539
    200769 5cp6:C (2.6) BS01 dna ? GO:0000786 ... P06897 27184539
    200770 5cp6:C (2.6) BS02 dna ? GO:0000786 ... P06897 27184539
    200771 5cp6:D (2.6) BS01 dna ? GO:0000786 ... P02281 27184539
    200772 5cp6:D (2.6) BS02 dna ? GO:0000786 ... P02281 27184539
    200773 5cp6:E (2.6) BS01 dna ? GO:0000786 ... P84233 27184539
    200774 5cp6:E (2.6) BS02 dna ? GO:0000786 ... P84233 27184539
    200775 5cp6:F (2.6) BS01 dna ? GO:0000786 ... P62799 27184539
    200776 5cp6:F (2.6) BS02 dna ? GO:0000786 ... P62799 27184539
    200777 5cp6:G (2.6) BS01 dna ? GO:0000786 ... P06897 27184539
    200778 5cp6:G (2.6) BS02 dna ? GO:0000786 ... P06897 27184539
    200779 5cp6:H (2.6) BS01 dna ? GO:0000786 ... P02281 27184539
    200780 5cp6:H (2.6) BS02 dna ? GO:0000786 ... P02281 27184539
    200781 5cp8:A (2.4) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200782 5cp8:A (2.4) BS02 TCU 1.3.1.9 GO:0004318 ... P9WGR1 26147157 MOAD: Ki=1570.6nM
    BindingDB: Ki=913nM, IC50=51nM
    200783 5cpb:A (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200784 5cpb:B (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200785 5cpb:C (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200786 5cpb:D (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200787 5cpb:E (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200788 5cpb:F (1.997) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 26147157
    200789 5cpi:A (2.902) BS01 dna ? GO:0000786 ... P68431 26446621
    200790 5cpi:A (2.902) BS02 dna ? GO:0000786 ... P68431 26446621
    200791 5cpi:B (2.902) BS01 dna ? GO:0000781 ... P62805 26446621
    200792 5cpi:B (2.902) BS02 dna ? GO:0000781 ... P62805 26446621
    200793 5cpi:C (2.902) BS01 dna ? GO:0000786 ... P04908 26446621
    200794 5cpi:C (2.902) BS02 dna ? GO:0000786 ... P04908 26446621
    200795 5cpi:D (2.902) BS01 dna ? GO:0000786 ... P06899 26446621
    200796 5cpi:D (2.902) BS02 dna ? GO:0000786 ... P06899 26446621
    200797 5cpi:E (2.902) BS01 dna ? GO:0000786 ... P68431 26446621
    200798 5cpi:E (2.902) BS02 dna ? GO:0000786 ... P68431 26446621
    200799 5cpi:F (2.902) BS01 dna ? GO:0000781 ... P62805 26446621
    200800 5cpi:F (2.902) BS02 dna ? GO:0000781 ... P62805 26446621
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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