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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    817601 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    817602 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    817603 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    817604 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    817605 9ij9:R (2.7) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    817606 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    817607 9ija:R (3.05) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    817608 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    817609 9ijp:C (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    817610 9ijp:L (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    817611 9ild:A (2.179) BS01 peptide N/A GO:0006508 ... A0A3J1GR98 N/A
    817612 9ild:A (2.179) BS02 ZN N/A GO:0006508 ... A0A3J1GR98 N/A
    817613 9ins:B (1.7) BS01 peptide ? GO:0005179 ... P01315 1504238
    817614 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    817615 9int:A (1.56) BS02 9RN N/A GO:0004553 ... A0A1B1Y771 39214858
    817616 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    817617 9iq9:A (1.58) BS01 MN N/A GO:0004053 ... D2Z025 N/A
    817618 9iq9:A (1.58) BS02 MN N/A GO:0004053 ... D2Z025 N/A
    817619 9iq9:B (1.58) BS01 CU1 N/A GO:0004053 ... D2Z025 N/A
    817620 9iq9:B (1.58) BS02 CU1 N/A GO:0004053 ... D2Z025 N/A
    817621 9iq9:B (1.58) BS03 CU1 N/A GO:0004053 ... D2Z025 N/A
    817622 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    817623 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    817624 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    817625 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    817626 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    817627 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    817628 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    817629 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    817630 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    817631 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    817632 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    817633 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    817634 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    817635 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    817636 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    817637 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    817638 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    817639 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    817640 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    817641 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    817642 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    817643 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    817644 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    817645 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    817646 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    817647 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    817648 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    817649 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    817650 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    817651 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    817652 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817653 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817654 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    817655 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817656 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817657 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    817658 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817659 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817660 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    817661 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    817662 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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