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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19401 1i7a:D (2.24) BS01 PHE ? GO:0007216 ... Q9QWW1 11491285
    19402 1i7b:A (1.9) BS01 SMM 4.1.1.50 GO:0004014 ... P17707 11583147
    19403 1i7b:A (1.9) BS02 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    19404 1i7b:B (1.9) BS01 SMM 4.1.1.50 GO:0004014 ... P17707 11583147
    19405 1i7c:A (2.4) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    19406 1i7c:A (2.4) BS02 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    19407 1i7c:B (2.4) BS01 MGB 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    19408 1i7d:A (2.05) BS01 dna 5.6.2.1 GO:0000287 ... P14294 11429611
    19409 1i7g:A (2.2) BS01 AZ2 ? GO:0003677 ... Q07869 11587644 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: EC50=820nM, Ki=1000nM
    19410 1i7g:A (2.2) BS02 CPQ ? GO:0003677 ... Q07869 11587644
    19411 1i7h:A (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    19412 1i7h:B (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    19413 1i7h:C (1.7) BS01 FES ? GO:0005515 ... P0A9R4 11551196
    19414 1i7i:A (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    BindingDB: EC50=704nM, Ki=18nM
    19415 1i7i:B (2.35) BS01 AZ2 ? GO:0003677 ... P37231 11587644 BindingDB: EC50=704nM, Ki=18nM
    19416 1i7l:A (2.35) BS01 ATP ? GO:0005524 ... Q63537 N/A
    19417 1i7l:B (2.35) BS01 ATP ? GO:0005524 ... Q63537 N/A
    19418 1i7m:A (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    19419 1i7m:A (2.24) BS02 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    19420 1i7m:B (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 PDBbind: -logKd/Ki=9.64, IC50=0.23nM
    19421 1i7m:C (2.24) BS01 PUT 4.1.1.50 GO:0004014 ... P17707 11583147
    19422 1i7m:C (2.24) BS02 CG 4.1.1.50 GO:0004014 ... P17707 11583147
    19423 1i7m:D (2.24) BS01 CG 4.1.1.50 GO:0004014 ... P17707 11583147 MOAD: ic50=0.23nM
    19424 1i7o:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    19425 1i7o:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    19426 1i7o:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    19427 1i7o:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 N/A
    19428 1i7p:A (2.0) BS01 FAD 1.6.2.2 GO:0016491 ... P20070 11695905
    19429 1i7q:A (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    19430 1i7q:A (1.95) BS02 PYR 4.1.3.27 GO:0000162 ... P00897 11371633
    19431 1i7q:B (1.95) BS01 GLU 4.1.3.27 GO:0000162 ... P00900 11371633
    19432 1i7q:C (1.95) BS01 MG 4.1.3.27 GO:0000162 ... P00897 11371633
    19433 1i7q:C (1.95) BS02 PYR 4.1.3.27 GO:0000162 ... P00897 11371633
    19434 1i7q:D (1.95) BS01 GLU 4.1.3.27 GO:0000162 ... P00900 11371633
    19435 1i7s:A (2.4) BS01 TRP 4.1.3.27 GO:0000162 ... P00897 11371633
    19436 1i7s:C (2.4) BS01 TRP 4.1.3.27 GO:0000162 ... P00897 11371633
    19437 1i7w:A (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    19438 1i7w:C (2.0) BS01 ZN ? GO:0007155 ... Q02248 11348595
    19439 1i7y:A (2.5) BS01 CYC ? GO:0009579 ... Q9AM02 11601847
    19440 1i7y:B (2.5) BS01 CYC ? GO:0009579 ... Q71RW8 11601847
    19441 1i7y:B (2.5) BS02 CYC ? GO:0009579 ... Q71RW8 11601847
    19442 1i7z:A (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    19443 1i7z:C (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    19444 1i80:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 11444966
    19445 1i80:A (2.0) BS02 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    19446 1i80:A (2.0) BS03 IMR 2.4.2.1 GO:0003824 ... P9WP01 11444966
    19447 1i80:B (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    19448 1i80:C (2.0) BS01 9HX 2.4.2.1 GO:0003824 ... P9WP01 11444966 MOAD: Kd=0.39uM
    PDBbind: -logKd/Ki=6.41, Kd=0.39uM
    19449 1i82:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    19450 1i82:A (1.9) BS02 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    19451 1i82:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19452 1i82:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19453 1i82:A (1.9) BS05 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19454 1i83:A (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    19455 1i83:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    19456 1i83:A (2.0) BS03 NTU 1.14.13.39 GO:0004517 ... P29473 11331290
    19457 1i83:B (2.0) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11331290
    19458 1i83:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    19459 1i83:B (2.0) BS03 NTU 1.14.13.39 GO:0004517 ... P29473 11331290
    19460 1i8a:A (1.9) BS01 BGC 3.2.1.8 GO:0004553 ... Q60037 11371186
    19461 1i8a:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19462 1i8a:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19463 1i8a:A (1.9) BS04 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19464 1i8i:A (2.4) BS01 peptide ? GO:0002250 ... P01660 11352579
    19465 1i8i:B (2.4) BS01 peptide ? GO:0002250 ... P18529 11352579
    19466 1i8j:A (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    19467 1i8j:A (1.9) BS02 DSB 4.2.1.24 GO:0000287 ... P0ACB2 11444968 PDBbind: -logKd/Ki=4.41, IC50=39uM
    19468 1i8j:B (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    19469 1i8j:B (1.9) BS02 DSB 4.2.1.24 GO:0000287 ... P0ACB2 11444968
    19470 1i8k:A (1.8) BS01 peptide ? GO:0002250 ... P01660 11352579
    19471 1i8k:B (1.8) BS01 peptide ? GO:0002250 ... P18529 11352579
    19472 1i8n:A (2.2) BS01 ROP ? GO:0005576 ... Q01747 11468390
    19473 1i8n:B (2.2) BS01 ROP ? GO:0005576 ... Q01747 11468390
    19474 1i8o:A (1.15) BS01 HEC ? GO:0009055 ... P00091 11742117
    19475 1i8p:A (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    19476 1i8p:B (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    19477 1i8p:C (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    19478 1i8p:D (1.95) BS01 HEC ? GO:0009055 ... P00091 11742117
    19479 1i8q:A (2.2) BS01 GC4 4.2.2.1 GO:0003824 ... Q53591 11527972
    19480 1i8q:A (2.2) BS02 GC4 4.2.2.1 GO:0003824 ... Q53591 11527972
    19481 1i8t:A (2.4) BS01 FAD 5.4.99.9 GO:0005515 ... P37747 11573090
    19482 1i8t:B (2.4) BS01 FAD 5.4.99.9 GO:0005515 ... P37747 11573090
    19483 1i8u:A (1.9) BS01 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19484 1i8u:A (1.9) BS02 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19485 1i8u:A (1.9) BS03 CA 3.2.1.8 GO:0004553 ... Q60037 11371186
    19486 1i8z:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    19487 1i8z:A (1.93) BS02 INL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.27nM
    PDBbind: -logKd/Ki=8.90, IC50=1.27nM
    BindingDB: Ki=0.15nM, IC50=1.3nM
    19488 1i90:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    19489 1i90:A (2.0) BS02 INM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.28nM
    PDBbind: -logKd/Ki=8.89, IC50=1.28nM
    19490 1i91:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900
    19491 1i91:A (2.0) BS02 INQ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11831900 MOAD: ic50=1.15nM
    PDBbind: -logKd/Ki=8.94, IC50=1.15nM
    BindingDB: Ki=0.15nM, IC50=1.2nM
    19492 1i94:B (3.2) BS01 rna ? GO:0003735 ... P80371 11296217
    19493 1i94:B (3.2) BS02 WO2 ? GO:0003735 ... P80371 11296217
    19494 1i94:B (3.2) BS03 WO2 ? GO:0003735 ... P80371 11296217
    19495 1i94:C (3.2) BS01 rna ? GO:0003676 ... P80372 11296217
    19496 1i94:C (3.2) BS02 WO2 ? GO:0003676 ... P80372 11296217
    19497 1i94:D (3.2) BS01 rna ? GO:0003723 ... P80373 11296217
    19498 1i94:D (3.2) BS02 MG ? GO:0003723 ... P80373 11296217
    19499 1i94:D (3.2) BS03 MG ? GO:0003723 ... P80373 11296217
    19500 1i94:E (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 11296217
    19501 1i94:E (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 11296217
    19502 1i94:E (3.2) BS03 WO2 ? GO:0003723 ... Q5SHQ5 11296217
    19503 1i94:F (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 11296217
    19504 1i94:G (3.2) BS01 rna ? GO:0000028 ... P17291 11296217
    19505 1i94:G (3.2) BS02 WO2 ? GO:0000028 ... P17291 11296217
    19506 1i94:H (3.2) BS01 rna ? GO:0003735 ... P0DOY9 11296217
    19507 1i94:H (3.2) BS02 WO2 ? GO:0003735 ... P0DOY9 11296217
    19508 1i94:I (3.2) BS01 rna ? GO:0000049 ... P80374 11296217
    19509 1i94:J (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    19510 1i94:J (3.2) BS02 WO2 ? GO:0000049 ... Q5SHN7 11296217
    19511 1i94:K (3.2) BS01 rna ? GO:0003735 ... P80376 11296217
    19512 1i94:K (3.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    19513 1i94:L (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    19514 1i94:L (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 11296217
    19515 1i94:L (3.2) BS03 MG ? GO:0000049 ... Q5SHN3 11296217
    19516 1i94:L (3.2) BS04 MG ? GO:0000049 ... Q5SHN3 11296217
    19517 1i94:M (3.2) BS01 rna ? GO:0000049 ... P80377 11296217
    19518 1i94:N (3.2) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    19519 1i94:N (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 11296217
    19520 1i94:O (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 11296217
    19521 1i94:P (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    19522 1i94:P (3.2) BS02 MG ? GO:0003735 ... Q5SJH3 11296217
    19523 1i94:Q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    19524 1i94:Q (3.2) BS02 MG ? GO:0003735 ... P0DOY7 11296217
    19525 1i94:Q (3.2) BS03 MG ? GO:0003735 ... P0DOY7 11296217
    19526 1i94:R (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 11296217
    19527 1i94:R (3.2) BS02 WO2 ? GO:0003735 ... Q5SLQ0 11296217
    19528 1i94:S (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    19529 1i94:T (3.2) BS01 rna ? GO:0003723 ... P80380 11296217
    19530 1i94:T (3.2) BS02 MG ? GO:0003723 ... P80380 11296217
    19531 1i94:T (3.2) BS03 MG ? GO:0003723 ... P80380 11296217
    19532 1i94:T (3.2) BS04 MG ? GO:0003723 ... P80380 11296217
    19533 1i95:C (4.5) BS01 rna ? GO:0003676 ... P80372 11296217
    19534 1i95:D (4.5) BS01 rna ? GO:0003723 ... P80373 11296217
    19535 1i95:G (4.5) BS01 WO2 ? GO:0000028 ... P17291 11296217
    19536 1i95:I (4.5) BS01 rna ? GO:0000049 ... P80374 11296217
    19537 1i95:J (4.5) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    19538 1i95:K (4.5) BS01 rna ? GO:0003735 ... P80376 11296217
    19539 1i95:K (4.5) BS02 WO2 ? GO:0003735 ... P80376 11296217
    19540 1i95:L (4.5) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    19541 1i95:N (4.5) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    19542 1i95:P (4.5) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    19543 1i95:Q (4.5) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    19544 1i95:S (4.5) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    19545 1i95:T (4.5) BS01 rna ? GO:0003723 ... P80380 11296217
    19546 1i96:B (4.2) BS01 rna ? GO:0003735 ... P80371 11296217
    19547 1i96:C (4.2) BS01 rna ? GO:0003676 ... P80372 11296217
    19548 1i96:D (4.2) BS01 rna ? GO:0003723 ... P80373 11296217
    19549 1i96:I (4.2) BS01 rna ? GO:0000049 ... P62669 11296217
    19550 1i96:J (4.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    19551 1i96:K (4.2) BS01 rna ? GO:0003735 ... P80376 11296217
    19552 1i96:K (4.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    19553 1i96:L (4.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    19554 1i96:P (4.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    19555 1i96:Q (4.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    19556 1i96:S (4.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    19557 1i96:T (4.2) BS01 rna ? GO:0003723 ... P80380 11296217
    19558 1i97:C (4.5) BS01 rna ? GO:0003676 ... P80372 11296217
    19559 1i97:D (4.5) BS01 rna ? GO:0003723 ... P80373 11296217
    19560 1i97:D (4.5) BS02 TAC ? GO:0003723 ... P80373 11296217
    19561 1i97:E (4.5) BS01 rna ? GO:0003723 ... Q5SHQ5 11296217
    19562 1i97:H (4.5) BS01 rna ? GO:0003735 ... P0DOY9 11296217
    19563 1i97:I (4.5) BS01 rna ? GO:0000049 ... P80374 11296217
    19564 1i97:I (4.5) BS02 TAC ? GO:0000049 ... P80374 11296217
    19565 1i97:J (4.5) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    19566 1i97:K (4.5) BS01 rna ? GO:0003735 ... P80376 11296217
    19567 1i97:K (4.5) BS02 WO2 ? GO:0003735 ... P80376 11296217
    19568 1i97:L (4.5) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    19569 1i97:M (4.5) BS01 rna ? GO:0000049 ... P80377 11296217
    19570 1i97:N (4.5) BS01 rna ? GO:0003735 ... P0DOY6 11296217
    19571 1i97:O (4.5) BS01 rna ? GO:0003735 ... Q5SJ76 11296217
    19572 1i97:P (4.5) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    19573 1i97:Q (4.5) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    19574 1i97:R (4.5) BS01 WO2 ? GO:0003735 ... Q5SLQ0 11296217
    19575 1i97:T (4.5) BS01 rna ? GO:0003723 ... P80380 11296217
    19576 1i9a:A (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    19577 1i9a:B (2.5) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 11698677
    19578 1i9b:A (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    19579 1i9b:A (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    19580 1i9b:B (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    19581 1i9b:C (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    19582 1i9b:D (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    19583 1i9b:E (2.7) BS01 CA ? GO:0004888 ... P58154 11357122
    19584 1i9b:E (2.7) BS02 CA ? GO:0004888 ... P58154 11357122
    19585 1i9c:A (1.9) BS01 B12 5.4.99.1 GO:0005515 ... P80078 11592143
    19586 1i9c:B (1.9) BS01 B12 5.4.99.1 GO:0003824 ... P80077 11592143
    19587 1i9c:B (1.9) BS02 GLU 5.4.99.1 GO:0003824 ... P80077 11592143
    19588 1i9c:B (1.9) BS03 2AS 5.4.99.1 GO:0003824 ... P80077 11592143
    19589 1i9c:C (1.9) BS01 B12 5.4.99.1 GO:0005515 ... P80078 11592143
    19590 1i9c:D (1.9) BS01 B12 5.4.99.1 GO:0003824 ... P80077 11592143
    19591 1i9c:D (1.9) BS02 GLU 5.4.99.1 GO:0003824 ... P80077 11592143
    19592 1i9c:D (1.9) BS03 2AS 5.4.99.1 GO:0003824 ... P80077 11592143
    19593 1i9d:A (1.65) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    19594 1i9g:A (1.98) BS01 SAM 2.1.1.220 GO:0005886 ... P9WFZ1 11554794
    19595 1i9h:A (2.4) BS01 BNI ? GO:0009374 ... P22629 11395489
    19596 1i9h:B (2.4) BS01 BNI ? GO:0009374 ... P22629 11395489
    19597 1i9l:A (1.93) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683
    19598 1i9l:A (1.93) BS02 INV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    19599 1i9l:A (1.93) BS03 INV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683 MOAD: Kd=3.3nM
    PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    19600 1i9m:A (1.84) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11572683
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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