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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1ap5:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1602 1ap6:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1603 1ap6:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1604 1ap8:A (-1.00) BS01 M7G ? GO:0000184 ... P07260 9302999
    1605 1ap9:A (2.35) BS01 RET ? GO:0005216 ... P02945 9287223
    1606 1apb:A (1.76) BS01 FCA ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    1607 1apb:A (1.76) BS02 FCB ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    PDBbind: -logKd/Ki=5.82, Kd=1.51uM
    1608 1aph:B (2.0) BS01 peptide ? GO:0005179 ... P01317 1477273
    1609 1aph:B (2.0) BS02 DCE ? GO:0005179 ... P01317 1477273
    1610 1apl:C (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1611 1apl:C (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1612 1apl:D (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1613 1apl:D (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1614 1apm:E (2.0) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 15299526
    1615 1apt:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 N/A
    1616 1apu:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 N/A
    1617 1apv:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 1567842
    1618 1apv:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    1619 1apw:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 1567842
    1620 1apw:E (1.8) BS02 MAN 3.4.23.20 GO:0004190 ... P00798 1567842
    1621 1apx:A (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1622 1apx:B (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1623 1apx:C (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1624 1apx:D (2.2) BS01 HEM 1.11.1.11 GO:0000302 ... P48534 7703247
    1625 1apz:B (2.3) BS01 ASP 3.5.1.26 GO:0016787 ... P20933 8846222 BindingDB: Ki=600000nM
    1626 1apz:D (2.3) BS01 ASP 3.5.1.26 GO:0016787 ... P20933 8846222 BindingDB: Ki=600000nM
    1627 1aq1:A (2.0) BS01 STU 2.7.11.22 GO:0000082 ... P24941 9334743 PDBbind: -logKd/Ki=8.15, IC50=7nM
    1628 1aq2:A (1.9) BS01 MN 4.1.1.49 GO:0000287 ... P22259 9406547
    1629 1aq2:A (1.9) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 9406547
    1630 1aq2:A (1.9) BS03 PYR 4.1.1.49 GO:0000287 ... P22259 9406547
    1631 1aq3:A (2.8) BS01 rna ? GO:0003723 ... P03612 9469847
    1632 1aq3:C (2.8) BS01 rna ? GO:0003723 ... P03612 9469847
    1633 1aq4:A (3.0) BS01 rna ? GO:0003723 ... P03612 9469847
    1634 1aq4:C (3.0) BS01 rna ? GO:0003723 ... P03612 9469847
    1635 1aq7:A (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 N/A
    1636 1aq8:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1637 1aq8:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1638 1aq8:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1639 1aq8:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1640 1aq8:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1641 1aq8:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1642 1aqa:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9363779
    1643 1aqb:A (1.65) BS01 CD ? GO:0005501 ... P27485 9757135
    1644 1aqb:A (1.65) BS02 RTL ? GO:0005501 ... P27485 9757135
    1645 1aqd:A (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1646 1aqd:B (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1647 1aqd:D (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1648 1aqd:E (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1649 1aqd:G (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1650 1aqd:H (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1651 1aqd:J (2.45) BS01 peptide ? GO:0006955 ... P01903 9351812
    1652 1aqd:K (2.45) BS01 peptide ? GO:0006955 ... P01911 9351812
    1653 1aqe:A (2.2) BS01 HEM ? GO:0009055 ... P38554 9485359
    1654 1aqe:A (2.2) BS02 HEM ? GO:0009055 ... P38554 9485359
    1655 1aqe:A (2.2) BS03 HEM ? GO:0009055 ... P38554 9485359
    1656 1aqe:A (2.2) BS04 HEM ? GO:0009055 ... P38554 9485359
    1657 1aqf:A (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1658 1aqf:A (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1659 1aqf:B (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1660 1aqf:B (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1661 1aqf:C (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1662 1aqf:C (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1663 1aqf:D (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1664 1aqf:D (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1665 1aqf:E (2.7) BS01 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1666 1aqf:F (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1667 1aqf:F (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1668 1aqf:G (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1669 1aqf:G (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1670 1aqf:H (2.7) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1671 1aqf:H (2.7) BS02 PEQ 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P11974 9308890
    1672 1aqh:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    1673 1aqh:A (2.0) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    1674 1aqi:A (2.6) BS01 SAH 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    1675 1aqi:B (2.6) BS01 SAH 2.1.1.72 GO:0003676 ... P14385 8995524
    1676 1aqj:A (2.6) BS01 SFG 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    1677 1aqj:B (2.6) BS01 SFG 2.1.1.72 GO:0003676 ... P14385 8995524
    1678 1aql:A (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1679 1aql:A (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1680 1aql:B (2.8) BS01 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1681 1aql:B (2.8) BS02 TCH 3.1.1.13
    3.1.1.3
    3.1.1.6
    GO:0004771 ... P30122 9331420
    1682 1aqm:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    1683 1aqm:A (1.85) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    1684 1aqn:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1685 1aqn:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    1686 1aqp:A (2.0) BS01 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1687 1aqp:A (2.0) BS02 CU 4.6.1.18 GO:0003676 ... P61823 9275172
    1688 1aqq:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    1689 1aqq:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    1690 1aqq:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    1691 1aqq:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    1692 1aqq:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    1693 1aqq:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    1694 1aqq:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    1695 1aqr:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    1696 1aqr:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    1697 1aqr:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    1698 1aqr:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    1699 1aqr:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    1700 1aqs:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    1701 1aqs:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    1702 1aqs:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    1703 1aqs:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    1704 1aqs:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    1705 1aqs:A (-1.00) BS06 CU1 N/A GO:0005507 ... N/A 8566237
    1706 1aqs:A (-1.00) BS07 CU1 N/A GO:0005507 ... N/A 8566237
    1707 1aqu:A (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1708 1aqu:A (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1709 1aqu:B (1.6) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1710 1aqu:B (1.6) BS02 EST 2.8.2.4 GO:0004304 ... P49891 9360604
    1711 1aqv:A (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1712 1aqv:B (1.94) BS01 0HG 2.5.1.18 GO:0000302 ... P09211 9351803
    1713 1aqw:A (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1714 1aqw:B (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1715 1aqw:C (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1716 1aqw:D (1.8) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9351803
    1717 1aqx:A (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1718 1aqx:B (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1719 1aqx:C (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1720 1aqx:D (2.0) BS01 GTD 2.5.1.18 GO:0000302 ... P09211 9351803
    1721 1aqy:A (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1722 1aqy:B (1.75) BS01 A3P 2.8.2.4 GO:0004304 ... P49891 9360604
    1723 1ar1:A (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P98002 9380672
    1724 1ar1:A (2.7) BS02 MG 7.1.1.9 GO:0004129 ... P98002 9380672
    1725 1ar1:A (2.7) BS03 CA 7.1.1.9 GO:0004129 ... P98002 9380672
    1726 1ar1:A (2.7) BS04 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1727 1ar1:A (2.7) BS05 HEA 7.1.1.9 GO:0004129 ... P98002 9380672
    1728 1ar1:B (2.7) BS01 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1729 1ar1:B (2.7) BS02 CU 7.1.1.9 GO:0004129 ... P08306 9380672
    1730 1ar4:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1731 1ar4:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P80293 N/A
    1732 1ar5:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1733 1ar5:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1734 1ar6:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1735 1ar7:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1736 1ar8:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1737 1ar9:4 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03300 9253417
    1738 1arc:A (2.0) BS01 TCK 3.4.21.50 GO:0004252 ... P15636 2492988
    1739 1arg:A (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1740 1arg:A (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1741 1arg:B (2.2) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1742 1arg:B (2.2) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1743 1arh:A (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1744 1arh:A (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1745 1arh:B (2.3) BS01 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1746 1arh:B (2.3) BS02 PPD 2.6.1.1 GO:0003824 ... P00509 7556224
    1747 1ari:A (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1748 1ari:B (2.3) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7851426
    1749 1arm:A (1.76) BS01 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1750 1arm:A (1.76) BS02 HG 3.4.17.1 GO:0004181 ... P00730 9867434
    1751 1arp:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1752 1arp:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    1753 1arp:A (1.9) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 8289254
    1754 1ars:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1755 1art:A (1.8) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 7798192
    1756 1art:A (1.8) BS02 0A0 2.6.1.1 GO:0003824 ... P00509 7798192
    1757 1aru:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1758 1aru:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1759 1aru:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1760 1arv:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1761 1arv:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1762 1arv:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1763 1arw:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1764 1arw:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1765 1arw:A (1.6) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1766 1arx:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1767 1arx:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1768 1arx:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1769 1arx:A (1.9) BS04 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1770 1arx:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1771 1ary:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1772 1ary:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    1773 1ary:A (1.9) BS03 IOD 1.11.1.7 GO:0000302 ... P28313 7665612
    1774 1ary:A (1.9) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 7665612
    1775 1arz:A (2.6) BS01 PO4 1.17.1.8 GO:0005737 ... P04036 9398235
    1776 1arz:B (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1777 1arz:B (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1778 1arz:C (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1779 1arz:C (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1780 1arz:D (2.6) BS01 NAI 1.17.1.8 GO:0005737 ... P04036 9398235
    1781 1arz:D (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    1782 1as0:A (2.0) BS01 MG ? GO:0000287 ... P10824 9398294
    1783 1as0:A (2.0) BS02 GSP ? GO:0000287 ... P10824 9398294
    1784 1as2:A (2.8) BS01 GDP ? GO:0000287 ... P10824 9398294
    1785 1as3:A (2.4) BS01 GDP ? GO:0000287 ... P10824 9398294
    1786 1as6:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1787 1as6:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1788 1as6:A (1.8) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1789 1as6:B (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1790 1as6:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1791 1as6:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1792 1as6:B (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1793 1as6:C (1.8) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1794 1as6:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1795 1as6:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1796 1as6:C (1.8) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 9353305
    1797 1as7:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1798 1as7:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1799 1as7:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 9353305
    1800 1as7:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 9353305

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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