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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14401 1gji:B (2.85) BS02 dna ? GO:0003677 ... P16236 11587641 PDBbind: Kd=25nM
    14402 1gjm:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    14403 1gjm:A (2.2) BS02 FEM 1.14.15.1 GO:0004497 ... P00183 N/A
    14404 1gjm:A (2.2) BS03 FEM 1.14.15.1 GO:0004497 ... P00183 N/A
    14405 1gjn:A (1.35) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 11935353
    14406 1gjp:A (1.8) BS01 4OX 4.2.1.24 GO:0004655 ... P05373 11513881
    14407 1gjp:A (1.8) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11513881
    14408 1gjq:A (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    14409 1gjq:A (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    14410 1gjq:B (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    14411 1gjq:B (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    14412 1gjr:A (2.1) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 12079352
    14413 1gjr:A (2.1) BS02 NAP 1.18.1.2 GO:0016491 ... P21890 12079352
    14414 1gjv:A (2.7) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    14415 1gjv:A (2.7) BS02 AGS 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    14416 1gjw:A (2.1) BS01 GLC ? GO:0004556 ... O33838 11545590
    14417 1gjw:A (2.1) BS02 GLC ? GO:0004556 ... O33838 11545590
    14418 1gjw:A (2.1) BS03 GLC ? GO:0004556 ... O33838 11545590
    14419 1gk0:B (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    14420 1gk0:B (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    14421 1gk0:D (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    14422 1gk0:D (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    14423 1gk1:B (2.4) BS01 GOL 3.5.1.93 GO:0016787 ... P07662 11742126
    14424 1gk1:D (2.4) BS01 GOL 3.5.1.93 GO:0016787 ... P07662 11742126
    14425 1gk8:A (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    14426 1gk8:A (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    14427 1gk8:C (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    14428 1gk8:C (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    14429 1gk8:E (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    14430 1gk8:E (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    14431 1gk8:G (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    14432 1gk8:G (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    14433 1gk9:B (1.3) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    14434 1gka:A (3.23) BS01 AXT ? GO:0000302 ... P58989 12119396
    14435 1gka:A (3.23) BS02 AXT ? GO:0000302 ... P58989 12119396
    14436 1gka:B (3.23) BS01 AXT ? GO:0000302 ... P80007 12119396
    14437 1gka:B (3.23) BS02 AXT ? GO:0000302 ... P80007 12119396
    14438 1gkb:A (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    14439 1gkb:A (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    14440 1gkb:A (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    14441 1gkb:B (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    14442 1gkb:B (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    14443 1gkb:B (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    14444 1gkc:A (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14445 1gkc:A (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14446 1gkc:A (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14447 1gkc:A (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14448 1gkc:A (2.3) BS05 NFH 3.4.24.35 GO:0004222 ... P14780 12051944
    14449 1gkc:A (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14450 1gkc:A (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14451 1gkc:B (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14452 1gkc:B (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14453 1gkc:B (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14454 1gkc:B (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14455 1gkc:B (2.3) BS05 NFH 3.4.24.35 GO:0004222 ... P14780 12051944
    14456 1gkc:B (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14457 1gkc:B (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14458 1gkd:A (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14459 1gkd:A (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14460 1gkd:A (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14461 1gkd:A (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14462 1gkd:A (2.1) BS05 STN 3.4.24.35 GO:0004222 ... P14780 12051944
    14463 1gkd:A (2.1) BS06 BUM 3.4.24.35 GO:0004222 ... P14780 12051944
    14464 1gkd:A (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14465 1gkd:A (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14466 1gkd:B (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14467 1gkd:B (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14468 1gkd:B (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14469 1gkd:B (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    14470 1gkd:B (2.1) BS05 STN 3.4.24.35 GO:0004222 ... P14780 12051944
    14471 1gkd:B (2.1) BS06 BUM 3.4.24.35 GO:0004222 ... P14780 12051944
    14472 1gkd:B (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14473 1gkd:B (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    14474 1gkf:B (1.41) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14475 1gkf:B (1.41) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14476 1gkf:B (1.41) BS03 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14477 1gkf:B (1.41) BS04 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14478 1gkf:B (1.41) BS05 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14479 1gkf:B (1.41) BS06 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14480 1gkf:B (1.41) BS07 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14481 1gkf:B (1.41) BS08 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14482 1gkf:B (1.41) BS09 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14483 1gkf:B (1.41) BS10 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14484 1gkf:B (1.41) BS11 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14485 1gkf:B (1.41) BS12 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    14486 1gkp:A (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14487 1gkp:A (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14488 1gkp:B (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14489 1gkp:B (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14490 1gkp:C (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14491 1gkp:C (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14492 1gkp:D (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14493 1gkp:D (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14494 1gkp:E (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14495 1gkp:E (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14496 1gkp:F (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14497 1gkp:F (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14498 1gkq:A (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14499 1gkq:A (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14500 1gkq:B (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14501 1gkq:B (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14502 1gkq:C (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14503 1gkq:C (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14504 1gkq:D (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14505 1gkq:D (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    14506 1gkr:A (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14507 1gkr:A (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14508 1gkr:B (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14509 1gkr:B (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14510 1gkr:C (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14511 1gkr:C (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14512 1gkr:D (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14513 1gkr:D (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    14514 1gks:A (-1.00) BS01 HEM ? GO:0005506 ... P00122 8969306
    14515 1gky:A (2.0) BS01 SO4 2.7.4.8 GO:0004385 ... P15454 1314905
    14516 1gky:A (2.0) BS02 5GP 2.7.4.8 GO:0004385 ... P15454 1314905
    14517 1gkz:A (2.2) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    14518 1gkz:A (2.2) BS02 ADP 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    14519 1gl3:A (2.6) BS01 CYS 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    14520 1gl3:A (2.6) BS02 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    14521 1gl3:B (2.6) BS01 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    14522 1gl9:B (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    14523 1gl9:C (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    14524 1gla:G (2.6) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    14525 1glb:G (2.6) BS01 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    14526 1glb:G (2.6) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    14527 1glc:F (2.65) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    14528 1glc:G (2.65) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14529 1glc:G (2.65) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14530 1gld:G (2.93) BS01 MN 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14531 1gld:G (2.93) BS02 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14532 1gld:G (2.93) BS03 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14533 1gle:F (2.94) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    14534 1gle:G (2.94) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14535 1gle:G (2.94) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    14536 1glf:O (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14537 1glf:O (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14538 1glf:O (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14539 1glf:X (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14540 1glf:X (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14541 1glf:X (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14542 1glf:Y (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14543 1glf:Y (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14544 1glf:Y (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14545 1glf:Z (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14546 1glf:Z (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14547 1glf:Z (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    14548 1glg:A (2.0) BS01 GAL ? GO:0005509 ... P0AEE5 8161535
    14549 1glg:A (2.0) BS02 CA ? GO:0005509 ... P0AEE5 8161535
    14550 1glh:A (2.0) BS01 NA 3.2.1.73 GO:0004553 ... P23904 8200344
    14551 1gli:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    14552 1gli:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    14553 1gli:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    14554 1gli:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    14555 1glj:O (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14556 1glj:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14557 1glj:Y (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14558 1glj:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14559 1gll:O (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14560 1gll:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14561 1gll:Y (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14562 1gll:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    14563 1glm:A (2.4) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14564 1glm:A (2.4) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14565 1glm:A (2.4) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14566 1glm:A (2.4) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14567 1glm:A (2.4) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14568 1glm:A (2.4) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14569 1glm:A (2.4) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14570 1glm:A (2.4) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14571 1glm:A (2.4) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    14572 1glp:A (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    14573 1glp:B (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    14574 1glq:A (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    14575 1glq:B (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    14576 1glu:A (2.9) BS01 dna ? GO:0003700 ... P06536 1865905
    14577 1glu:A (2.9) BS02 dna ? GO:0003700 ... P06536 1865905
    14578 1glu:A (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    14579 1glu:A (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    14580 1glu:B (2.9) BS01 dna ? GO:0003700 ... P06536 1865905
    14581 1glu:B (2.9) BS02 dna ? GO:0003700 ... P06536 1865905
    14582 1glu:B (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    14583 1glu:B (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    14584 1gm4:A (2.05) BS01 HEC ? GO:0009055 ... Q9L915 11551953
    14585 1gm4:A (2.05) BS02 HEC ? GO:0009055 ... Q9L915 11551953
    14586 1gm4:A (2.05) BS03 HEC ? GO:0009055 ... Q9L915 11551953
    14587 1gm4:A (2.05) BS04 HEC ? GO:0009055 ... Q9L915 11551953
    14588 1gm4:A (2.05) BS05 SO4 ? GO:0009055 ... Q9L915 11551953
    14589 1gm5:A (3.24) BS01 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    14590 1gm5:A (3.24) BS02 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    14591 1gm5:A (3.24) BS03 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    14592 1gm5:A (3.24) BS04 ADP 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    14593 1gm6:A (2.13) BS01 GOL ? GO:0005549 ... P81608 12027882
    14594 1gm7:B (1.45) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    14595 1gm7:B (1.45) BS02 PNN 3.5.1.11 GO:0016787 ... P06875 11601852
    14596 1gm8:B (2.0) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    14597 1gm8:B (2.0) BS02 SOX 3.5.1.11 GO:0016787 ... P06875 11601852
    14598 1gm9:A (1.8) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14599 1gm9:A (1.8) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14600 1gm9:A (1.8) BS03 SOX 3.5.1.11 GO:0016787 ... P06875 11601852
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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