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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    817201 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    817202 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    817203 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    817204 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    817205 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    817206 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    817207 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    817208 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    817209 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    817210 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    817211 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    817212 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    817213 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    817214 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    817215 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    817216 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    817217 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    817218 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    817219 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    817220 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    817221 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    817222 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    817223 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    817224 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    817225 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    817226 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    817227 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    817228 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    817229 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    817230 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    817231 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    817232 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    817233 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    817234 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    817235 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    817236 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    817237 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    817238 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    817239 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    817240 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    817241 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    817242 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    817243 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    817244 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817245 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817246 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817247 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817248 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817249 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817250 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817251 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    817252 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    817253 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817254 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817255 9fdj:B (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817256 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    817257 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817258 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817259 9fdj:D (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817260 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    817261 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817262 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817263 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    817264 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817265 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817266 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    817267 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817268 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817269 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    817270 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817271 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817272 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    817273 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817274 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817275 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817276 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    817277 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817278 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817279 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817280 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    817281 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817282 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817283 9fe5:B (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817284 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    817285 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817286 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817287 9fe5:D (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817288 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    817289 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817290 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817291 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    817292 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817293 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817294 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    817295 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817296 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817297 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    817298 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817299 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817300 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    817301 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817302 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817303 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817304 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    817305 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817306 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817307 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817308 9ffb:B (3.59) BS01 dna N/A GO:0005515 ... B0I564 N/A
    817309 9ffb:B (3.59) BS02 dna N/A GO:0005515 ... B0I564 N/A
    817310 9fff:B (3.68) BS01 dna N/A GO:0005515 ... B0I564 N/A
    817311 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    817312 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    817313 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    817314 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    817315 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    817316 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    817317 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    817318 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    817319 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    817320 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    817321 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    817322 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    817323 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    817324 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    817325 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    817326 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    817327 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    817328 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    817329 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    817330 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    817331 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    817332 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    817333 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    817334 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    817335 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    817336 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    817337 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    817338 9fh9:D (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    817339 9fh9:D (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    817340 9fh9:D (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    817341 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    817342 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    817343 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    817344 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    817345 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    817346 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    817347 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    817348 9fh9:H (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    817349 9fh9:H (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    817350 9fh9:H (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    817351 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    817352 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817353 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817354 9fif:B (1.77) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817355 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    817356 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817357 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817358 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    817359 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817360 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817361 9fih:B (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817362 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    817363 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817364 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817365 9fih:D (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    817366 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    817367 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817368 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817369 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    817370 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817371 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    817372 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    817373 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817374 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817375 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    817376 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817377 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817378 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    817379 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817380 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817381 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817382 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    817383 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    817384 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    817385 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    817386 9fmd:1 (3.3) BS01 rna N/A GO:0003014 ... Q9H875 38925148
    817387 9fmd:1 (3.3) BS02 rna N/A GO:0003014 ... Q9H875 38925148
    817388 9fmd:32 (3.3) BS01 rna N/A GO:0003723 ... Q9Y421 38925148
    817389 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    817390 9fmd:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    817391 9fmd:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    817392 9fmd:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    817393 9fmd:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    817394 9fmd:A (3.3) BS05 rna N/A GO:0000244 ... Q6P2Q9 38925148
    817395 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    817396 9fmd:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 38925148
    817397 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    817398 9fmd:E (3.3) BS01 rna N/A GO:0000375 ... Q96DI7 38925148
    817399 9fmd:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 38925148
    817400 9fmd:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 38925148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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