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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816601 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    816602 9bdp:AL04 (3.7) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816603 9bdp:AL04 (3.7) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816604 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    816605 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    816606 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    816607 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    816608 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    816609 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    816610 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    816611 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    816612 9bdp:AL11 (3.7) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    816613 9bdp:AL11 (3.7) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    816614 9bdp:AL11 (3.7) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    816615 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    816616 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    816617 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    816618 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    816619 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    816620 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    816621 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    816622 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    816623 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    816624 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    816625 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    816626 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    816627 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    816628 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    816629 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    816630 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    816631 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    816632 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    816633 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    816634 9bdp:AL32 (3.7) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    816635 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    816636 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    816637 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    816638 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    816639 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    816640 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    816641 9bdp:AL39 (3.7) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    816642 9bdp:AL39 (3.7) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    816643 9bdp:AL43 (3.7) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    816644 9bdp:ALNW (3.7) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    816645 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    816646 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    816647 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    816648 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    816649 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    816650 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    816651 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    816652 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    816653 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    816654 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    816655 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    816656 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    816657 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    816658 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    816659 9bdp:AS18 (3.7) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    816660 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    816661 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    816662 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    816663 9bdp:AS24 (3.7) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    816664 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    816665 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    816666 9bdp:AS29 (3.7) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    816667 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    816668 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    816669 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    816670 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    816671 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    816672 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    816673 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    816674 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    816675 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    816676 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    816677 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    816678 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    816679 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    816680 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    816681 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    816682 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    816683 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    816684 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    816685 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    816686 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    816687 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    816688 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    816689 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    816690 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    816691 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    816692 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    816693 9bh8:A (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816694 9bh8:B (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816695 9bh9:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816696 9bh9:A (3.5) BS02 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816697 9bh9:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816698 9bha:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816699 9bha:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    816700 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    816701 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    816702 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    816703 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    816704 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    816705 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    816706 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    816707 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    816708 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    816709 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    816710 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    816711 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    816712 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    816713 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    816714 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    816715 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    816716 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    816717 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    816718 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    816719 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    816720 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 N/A
    816721 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    816722 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    816723 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    816724 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    816725 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287
    816726 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    816727 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    816728 9bk3:D (2.4) BS01 A1AR0 N/A GO:0004459 ... P00338 38925013
    816729 9bkj:R (2.59) BS01 peptide ? GO:0001764 ... P32238 39083706
    816730 9bkk:R (2.51) BS01 peptide ? GO:0001764 ... P32238 39083706
    816731 9bkl:A (1.7) BS01 CO ? GO:0009055 ... P24297 N/A
    816732 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    816733 9bkm:A (2.08) BS02 A1AQM N/A GO:0004151 ... Q02127 38889244
    816734 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    816735 9bkn:A (1.3) BS02 A1AQK N/A GO:0004151 ... Q02127 38889244
    816736 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    816737 9bko:A (1.44) BS02 A1AQL N/A GO:0004151 ... Q02127 38889244
    816738 9bkp:A (1.8) BS01 FE ? GO:0009055 ... P24297 N/A
    816739 9bkt:A (1.8) BS01 FE2 ? GO:0009055 ... P24297 N/A
    816740 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    816741 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    816742 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    816743 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    816744 9bn8:A (1.35) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    816745 9bn8:A (1.35) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    816746 9bn9:A (1.23) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    816747 9bn9:A (1.23) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    816748 9bn9:A (1.23) BS03 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    816749 9bnj:A (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    816750 9bnj:A (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    816751 9bnj:A (1.51) BS03 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    816752 9bnj:B (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    816753 9bnj:B (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    816754 9bnj:C (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    816755 9bnj:C (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    816756 9bnj:D (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    816757 9bnj:D (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    816758 9bnq:A (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    816759 9bnq:B (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    816760 9bnq:C (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    816761 9bnr:A (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    816762 9bnr:B (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    816763 9bnr:C (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    816764 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    816765 9bp6:B (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    816766 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    816767 9bp6:Q (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    816768 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    816769 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    816770 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    816771 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    816772 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    816773 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    816774 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    816775 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816776 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816777 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816778 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    816779 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816780 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816781 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816782 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816783 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816784 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816785 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    816786 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816787 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816788 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    816789 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816790 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816791 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    816792 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    816793 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    816794 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    816795 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    816796 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    816797 9bul:A (2.1) BS01 FE2 N/A GO:0003677 ... Q9X1T8 N/A
    816798 9bul:A (2.1) BS02 NIO N/A GO:0003677 ... Q9X1T8 N/A
    816799 9bul:A (2.1) BS03 PRO N/A GO:0003677 ... Q9X1T8 N/A
    816800 9c3d:A (1.85) BS01 ZN N/A GO:0008800 ... C6W709 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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