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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814201 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    814202 8xt3:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    814203 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    814204 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    814205 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    814206 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    814207 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    814208 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    814209 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814210 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814211 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814212 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814213 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814214 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814215 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814216 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814217 8xus:B (3.18) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    814218 8xuu:A (3.69) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    814219 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814220 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814221 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814222 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814223 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814224 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814225 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814226 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814227 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814228 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814229 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814230 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814231 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814232 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814233 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814234 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814235 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814236 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814237 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814238 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814239 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814240 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814241 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    814242 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    814243 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    814244 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    814245 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    814246 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814247 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814248 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814249 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814250 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814251 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814252 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814253 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    814254 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814255 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814256 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    814257 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814258 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814259 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814260 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814261 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    814262 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    814263 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    814264 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814265 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814266 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    814267 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814268 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814269 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    814270 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    814271 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    814272 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    814273 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    814274 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    814275 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    814276 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    814277 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    814278 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    814279 8xw6:A (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814280 8xw6:A (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814281 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    814282 8xw6:A (1.99) BS04 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814283 8xw6:B (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814284 8xw6:B (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814285 8xw6:B (1.99) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814286 8xw7:A (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814287 8xw7:A (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814288 8xw7:A (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814289 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    814290 8xw7:B (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814291 8xw7:B (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814292 8xw7:B (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814293 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    814294 8xw8:A (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814295 8xw8:A (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814296 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    814297 8xw8:A (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814298 8xw8:B (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814299 8xw8:B (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814300 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    814301 8xw8:B (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814302 8xw8:C (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814303 8xw8:C (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814304 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    814305 8xw8:C (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814306 8xw8:D (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814307 8xw8:D (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814308 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    814309 8xw8:D (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814310 8xw9:A (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814311 8xw9:A (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814312 8xw9:A (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814313 8xw9:A (1.75) BS04 UDP N/A GO:0004743 ... Q8DQ84 39009072
    814314 8xw9:B (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    814315 8xw9:B (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    814316 8xw9:B (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    814317 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814318 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814319 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814320 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814321 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814322 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814323 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814324 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814325 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814326 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814327 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    814328 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    814329 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    814330 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    814331 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    814332 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    814333 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    814334 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    814335 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    814336 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    814337 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    814338 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    814339 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    814340 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    814341 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    814342 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    814343 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    814344 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    814345 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    814346 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    814347 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    814348 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    814349 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    814350 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    814351 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    814352 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    814353 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    814354 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    814355 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    814356 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    814357 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    814358 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    814359 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    814360 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    814361 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    814362 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    814363 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    814364 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    814365 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    814366 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    814367 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    814368 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    814369 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    814370 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    814371 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    814372 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    814373 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    814374 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    814375 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    814376 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    814377 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    814378 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    814379 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    814380 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    814381 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    814382 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    814383 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    814384 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    814385 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    814386 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    814387 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    814388 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    814389 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    814390 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    814391 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    814392 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    814393 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    814394 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    814395 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    814396 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    814397 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    814398 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    814399 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    814400 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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