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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814001 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    814002 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    814003 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    814004 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    814005 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    814006 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    814007 8xt0:SJ (3.2) BS01 rna N/A GO:0003674 ... P82664 38942792
    814008 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    814009 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    814010 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    814011 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    814012 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    814013 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    814014 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    814015 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    814016 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    814017 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    814018 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    814019 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    814020 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    814021 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    814022 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    814023 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    814024 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    814025 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    814026 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    814027 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    814028 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    814029 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    814030 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    814031 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    814032 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    814033 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    814034 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    814035 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    814036 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    814037 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    814038 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    814039 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    814040 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    814041 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    814042 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    814043 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    814044 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    814045 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    814046 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    814047 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    814048 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    814049 8xt1:LR (3.1) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    814050 8xt1:LR (3.1) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    814051 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    814052 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    814053 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    814054 8xt1:LV (3.1) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    814055 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    814056 8xt1:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    814057 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    814058 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    814059 8xt1:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    814060 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    814061 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    814062 8xt1:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    814063 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    814064 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    814065 8xt1:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    814066 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    814067 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    814068 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    814069 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    814070 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    814071 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    814072 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    814073 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    814074 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    814075 8xt1:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    814076 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    814077 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    814078 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    814079 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    814080 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    814081 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    814082 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    814083 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    814084 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    814085 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    814086 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    814087 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    814088 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    814089 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    814090 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    814091 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    814092 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    814093 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    814094 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    814095 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    814096 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    814097 8xt2:LR (3.3) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    814098 8xt2:LR (3.3) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    814099 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    814100 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    814101 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    814102 8xt2:LV (3.3) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    814103 8xt2:LW (3.3) BS01 rna N/A GO:0001650 ... Q16540 38942792
    814104 8xt2:LX (3.3) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    814105 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    814106 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    814107 8xt2:Ld (3.3) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    814108 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    814109 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    814110 8xt2:Lg (3.3) BS01 rna N/A GO:0005739 ... O75394 38942792
    814111 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    814112 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    814113 8xt2:Lj (3.3) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    814114 8xt2:Lj (3.3) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    814115 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    814116 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    814117 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    814118 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    814119 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    814120 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    814121 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    814122 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    814123 8xt2:Lu (3.3) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    814124 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    814125 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    814126 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    814127 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    814128 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    814129 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    814130 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    814131 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    814132 8xt2:SG (3.3) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    814133 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    814134 8xt2:SJ (3.3) BS01 rna N/A GO:0003674 ... P82664 38942792
    814135 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    814136 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    814137 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    814138 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    814139 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    814140 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    814141 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    814142 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    814143 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    814144 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    814145 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    814146 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    814147 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    814148 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    814149 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    814150 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    814151 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    814152 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    814153 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    814154 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    814155 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    814156 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    814157 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    814158 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    814159 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    814160 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    814161 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    814162 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    814163 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    814164 8xt3:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    814165 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    814166 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    814167 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    814168 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    814169 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    814170 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    814171 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    814172 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    814173 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    814174 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    814175 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    814176 8xt3:LR (3.1) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    814177 8xt3:LR (3.1) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    814178 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    814179 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    814180 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    814181 8xt3:LV (3.1) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    814182 8xt3:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    814183 8xt3:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    814184 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    814185 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    814186 8xt3:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    814187 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    814188 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    814189 8xt3:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    814190 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    814191 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    814192 8xt3:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    814193 8xt3:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    814194 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    814195 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    814196 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    814197 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    814198 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    814199 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    814200 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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