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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809401 8wal:6 (8.52) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809402 8wal:7 (8.52) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809403 8wal:P (8.52) BS01 dna ? GO:0000785 ... P20226 38127763
    809404 8wal:P (8.52) BS02 dna ? GO:0000785 ... P20226 38127763
    809405 8wal:Q (8.52) BS01 dna ? GO:0000979 ... P52655 38127763
    809406 8wal:R (8.52) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809407 8wal:R (8.52) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809408 8wal:R (8.52) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809409 8wal:T (8.52) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809410 8wal:U (8.52) BS01 ZN ? GO:0001113 ... P29083 38127763
    809411 8wal:o (8.52) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809412 8wal:o (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809413 8wal:o (8.52) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809414 8wal:o (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809415 8wal:o (8.52) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809416 8wal:o (8.52) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809417 8wal:p (8.52) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809418 8wal:p (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809419 8wal:p (8.52) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809420 8wal:p (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809421 8wal:q (8.52) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809422 8wal:s (8.52) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809423 8wal:w (8.52) BS01 ZN ? GO:0000428 ... P60899 38127763
    809424 8wal:w (8.52) BS02 ZN ? GO:0000428 ... P60899 38127763
    809425 8wal:x (8.52) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809426 8wal:z (8.52) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809427 8wam:A (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    809428 8wam:A (3.23) BS02 MG ? GO:0005524 ... Q84TH5 38050355
    809429 8wam:A (3.23) BS03 ATP ? GO:0005524 ... Q84TH5 38050355
    809430 8wam:B (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    809431 8wam:B (3.23) BS02 ATP ? GO:0005524 ... Q84TH5 38050355
    809432 8wam:B (3.23) BS03 MG ? GO:0005524 ... Q84TH5 38050355
    809433 8wan:0 (6.07) BS01 ZN ? GO:0000082 ... P51948 38127763
    809434 8wan:2 (6.07) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809435 8wan:2 (6.07) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809436 8wan:2 (6.07) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809437 8wan:3 (6.07) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809438 8wan:3 (6.07) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809439 8wan:6 (6.07) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809440 8wan:6 (6.07) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809441 8wan:7 (6.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809442 8wan:P (6.07) BS01 dna ? GO:0000785 ... P20226 38127763
    809443 8wan:P (6.07) BS02 dna ? GO:0000785 ... P20226 38127763
    809444 8wan:Q (6.07) BS01 dna ? GO:0000979 ... P52655 38127763
    809445 8wan:R (6.07) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809446 8wan:R (6.07) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809447 8wan:R (6.07) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809448 8wan:T (6.07) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809449 8wan:U (6.07) BS01 ZN ? GO:0001113 ... P29083 38127763
    809450 8wan:o (6.07) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809451 8wan:o (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809452 8wan:o (6.07) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809453 8wan:o (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809454 8wan:o (6.07) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809455 8wan:o (6.07) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809456 8wan:p (6.07) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809457 8wan:p (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809458 8wan:p (6.07) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809459 8wan:p (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809460 8wan:q (6.07) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809461 8wan:s (6.07) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809462 8wan:w (6.07) BS01 ZN ? GO:0000428 ... P60899 38127763
    809463 8wan:w (6.07) BS02 ZN ? GO:0000428 ... P60899 38127763
    809464 8wan:x (6.07) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809465 8wan:z (6.07) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809466 8wao:0 (6.4) BS01 ZN ? GO:0000082 ... P51948 38127763
    809467 8wao:2 (6.4) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809468 8wao:2 (6.4) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809469 8wao:2 (6.4) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809470 8wao:3 (6.4) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809471 8wao:3 (6.4) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809472 8wao:6 (6.4) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809473 8wao:6 (6.4) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809474 8wao:7 (6.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809475 8wao:P (6.4) BS01 dna ? GO:0000785 ... P20226 38127763
    809476 8wao:P (6.4) BS02 dna ? GO:0000785 ... P20226 38127763
    809477 8wao:Q (6.4) BS01 dna ? GO:0000979 ... P52655 38127763
    809478 8wao:R (6.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809479 8wao:R (6.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809480 8wao:R (6.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809481 8wao:T (6.4) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809482 8wao:U (6.4) BS01 ZN ? GO:0001113 ... P29083 38127763
    809483 8wao:o (6.4) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809484 8wao:o (6.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809485 8wao:o (6.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809486 8wao:o (6.4) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809487 8wao:o (6.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809488 8wao:o (6.4) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809489 8wao:o (6.4) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809490 8wao:p (6.4) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809491 8wao:p (6.4) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809492 8wao:p (6.4) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809493 8wao:p (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809494 8wao:q (6.4) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809495 8wao:s (6.4) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809496 8wao:w (6.4) BS01 ZN ? GO:0000428 ... P60899 38127763
    809497 8wao:w (6.4) BS02 ZN ? GO:0000428 ... P60899 38127763
    809498 8wao:x (6.4) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809499 8wao:z (6.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809500 8wap:0 (5.85) BS01 ZN ? GO:0000082 ... P51948 38127763
    809501 8wap:2 (5.85) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809502 8wap:2 (5.85) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809503 8wap:2 (5.85) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809504 8wap:3 (5.85) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809505 8wap:3 (5.85) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809506 8wap:6 (5.85) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809507 8wap:6 (5.85) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809508 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809509 8wap:P (5.85) BS01 dna ? GO:0000785 ... P20226 38127763
    809510 8wap:P (5.85) BS02 dna ? GO:0000785 ... P20226 38127763
    809511 8wap:Q (5.85) BS01 dna ? GO:0000979 ... P52655 38127763
    809512 8wap:R (5.85) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809513 8wap:R (5.85) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809514 8wap:R (5.85) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809515 8wap:T (5.85) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809516 8wap:U (5.85) BS01 ZN ? GO:0001113 ... P29083 38127763
    809517 8wap:o (5.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809518 8wap:o (5.85) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809519 8wap:o (5.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809520 8wap:o (5.85) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809521 8wap:o (5.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809522 8wap:o (5.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809523 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809524 8wap:p (5.85) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809525 8wap:p (5.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809526 8wap:p (5.85) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809527 8wap:p (5.85) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809528 8wap:q (5.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809529 8wap:s (5.85) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809530 8wap:w (5.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    809531 8wap:w (5.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    809532 8wap:x (5.85) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809533 8wap:z (5.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809534 8waq:0 (6.29) BS01 ZN ? GO:0000082 ... P51948 38127763
    809535 8waq:2 (6.29) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809536 8waq:2 (6.29) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809537 8waq:2 (6.29) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809538 8waq:3 (6.29) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809539 8waq:3 (6.29) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809540 8waq:6 (6.29) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809541 8waq:6 (6.29) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809542 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809543 8waq:P (6.29) BS01 dna ? GO:0000785 ... P20226 38127763
    809544 8waq:P (6.29) BS02 dna ? GO:0000785 ... P20226 38127763
    809545 8waq:Q (6.29) BS01 dna ? GO:0000979 ... P52655 38127763
    809546 8waq:R (6.29) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809547 8waq:R (6.29) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809548 8waq:R (6.29) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809549 8waq:T (6.29) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809550 8waq:U (6.29) BS01 ZN ? GO:0001113 ... P29083 38127763
    809551 8waq:o (6.29) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809552 8waq:o (6.29) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809553 8waq:o (6.29) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809554 8waq:o (6.29) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809555 8waq:o (6.29) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809556 8waq:o (6.29) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809557 8waq:o (6.29) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809558 8waq:p (6.29) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809559 8waq:p (6.29) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809560 8waq:p (6.29) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809561 8waq:p (6.29) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809562 8waq:q (6.29) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809563 8waq:s (6.29) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809564 8waq:w (6.29) BS01 ZN ? GO:0000428 ... P60899 38127763
    809565 8waq:w (6.29) BS02 ZN ? GO:0000428 ... P60899 38127763
    809566 8waq:x (6.29) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809567 8waq:z (6.29) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809568 8war:0 (7.2) BS01 ZN ? GO:0000082 ... P51948 38127763
    809569 8war:2 (7.2) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809570 8war:2 (7.2) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809571 8war:2 (7.2) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809572 8war:3 (7.2) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809573 8war:3 (7.2) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809574 8war:6 (7.2) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809575 8war:6 (7.2) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809576 8war:7 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809577 8war:P (7.2) BS01 dna ? GO:0000785 ... P20226 38127763
    809578 8war:P (7.2) BS02 dna ? GO:0000785 ... P20226 38127763
    809579 8war:Q (7.2) BS01 dna ? GO:0000979 ... P52655 38127763
    809580 8war:R (7.2) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809581 8war:R (7.2) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809582 8war:R (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809583 8war:T (7.2) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809584 8war:U (7.2) BS01 ZN ? GO:0001113 ... P29083 38127763
    809585 8war:o (7.2) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809586 8war:o (7.2) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809587 8war:o (7.2) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809588 8war:o (7.2) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809589 8war:o (7.2) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809590 8war:o (7.2) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809591 8war:o (7.2) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809592 8war:p (7.2) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809593 8war:p (7.2) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809594 8war:p (7.2) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809595 8war:p (7.2) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809596 8war:q (7.2) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809597 8war:s (7.2) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809598 8war:w (7.2) BS01 ZN ? GO:0000428 ... P60899 38127763
    809599 8war:w (7.2) BS02 ZN ? GO:0000428 ... P60899 38127763
    809600 8war:x (7.2) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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